Sdf2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Sdf2 0.02 0.02 1.5e-03 0.01 0.01 0.01 0.01 1.6e-02 2.2e-03 2.5e-02 1.8e-02
2 Liver gene expression Sdf2 0.37 0.16 0.0e+00 0.29 0.36 0.35 0.35 1.5e-32 2.8e-41 6.1e-40 3.7e-40
3 Brain gene expression Sdf2 0.04 0.04 3.0e-03 0.02 0.02 0.02 0.01 5.8e-03 9.2e-03 8.8e-03 1.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.34.04.0-2.0-2.02.0
Area under the delay curve2.42.83.01.61.7-1.7
BMI with tail1.75.96.1-2.5-2.52.4
BMI without tail2.26.87.0-2.6-2.62.6
Body weight2.611.311.7-3.4-3.43.3
Weight adjusted by age0.10.20.3-0.4-0.50.5
Bone surface1.73.13.2-1.7-1.81.8
Bone volume1.52.62.6-1.6-1.61.6
Breakpoint value in progressive ratio session0.70.91.0-0.9-0.91.0
Number of licking bursts0.20.40.40.60.6-0.6
Context. condit. distance diff. score0.60.70.7-0.8-0.80.8
Locomotion velocity, session 12.22.32.4-1.5-1.51.5
Locomotion distance, session 10.20.30.3-0.5-0.50.5
Locomotion velocity, session 20.00.10.1-0.2-0.20.2
Locomotion distance, session 21.21.61.7-1.3-1.31.3
Locomotion velocity, session 33.23.73.81.91.9-1.9
Locomotion distance, session 30.40.50.50.70.7-0.7
Stereotopy head waving bouts, day 30.00.00.0-0.1-0.10.2
Stereotopy head waving duration, day 30.30.40.40.70.6-0.5
Locomotion velocity, session 70.40.40.5-0.6-0.60.7
Locomotion distance, session 70.50.70.7-0.8-0.80.8
Stereotopy head waving bouts, day 70.50.60.6-0.8-0.80.8
Stereotopy head waving duration, day 70.30.30.4-0.6-0.60.6
Locomotion velocity, session 80.00.00.0-0.1-0.10.1
Locomotion distance, session 80.81.21.2-1.1-1.11.1
Degree of sensitization distance3.43.53.6-1.9-1.91.9
Degree of sensitization stereotypy0.60.70.7-0.8-0.80.8
Conditioned locomotion1.51.71.81.31.3-1.2
Cocaine response after cond. corrected1.61.91.9-1.4-1.41.4
Cocaine response after cond. not corrected2.12.52.5-1.6-1.61.6
Cocaine response before conditioning0.20.30.3-0.5-0.50.5
Saline control response0.00.00.00.0-0.00.1
Bone: connectivity density4.16.46.7-2.5-2.52.6
Bone: cortical apparent density0.40.60.60.80.7-0.7
Bone: cortical area1.62.42.51.51.5-1.6
Bone: cortical porosity0.30.30.4-0.6-0.60.6
Bone: cortical porosity0.10.10.2-0.4-0.40.4
Bone: cortical thickness2.84.74.82.22.2-2.2
Bone: cortical thickness0.00.00.00.10.1-0.1
Bone: cortical tissue density0.20.30.30.60.5-0.5
Condit. Reinf. active minus inactive responses0.70.70.80.90.9-0.8
Condit. Reinf. active-inactive response ratio0.20.20.20.40.4-0.4
Condit. Reinf. active responses0.00.00.00.10.1-0.1
Condit. Reinf. inactive responses0.30.40.4-0.6-0.60.6
Incentive salience index mean0.30.30.30.60.6-0.6
Condit. Reinf. lever presses0.10.10.1-0.3-0.30.3
Condit. Reinf. active minus inactive responses0.20.30.30.60.5-0.5
Condit. Reinf. active-inactive response ratio0.50.60.60.80.8-0.7
Condit. Reinf. active responses0.10.10.20.40.4-0.3
Condit. Reinf. inactive responses0.00.10.1-0.2-0.20.3
Condit. Reinf. lever presses2.43.33.41.91.8-1.8
Condit. Reinf. lever reinforcers received0.30.50.50.70.7-0.6
Conditioned reinforcement - actives0.20.40.4-0.6-0.60.7
Conditioned reinforcement - inactives0.10.10.1-0.4-0.30.3
Conditioned locomotion0.20.30.3-0.5-0.50.5
Patch foraging indifference point 0 sec0.40.70.70.80.8-0.9
Patch foraging indifference point AUC2.13.03.11.81.7-1.7
Delay disc. indifference point, 0s delay1.01.11.21.01.0-1.1
Delay disc. indifference point, 16s delay1.92.12.41.31.4-1.5
Delay disc. indifference point, 2s delay2.83.13.11.81.8-1.7
Delay disc. indifference point, 24s delay0.60.70.7-0.8-0.80.8
Delay disc. indifference point, 4s delay0.30.30.30.50.5-0.6
Delay disc. indifference point, 8s delay1.21.51.61.21.2-1.3
Indifference point function ln k0.50.90.9-1.0-1.01.0
Indifference point function log k0.50.90.9-1.0-1.01.0
Patch foraging total patch changes 0 sec0.30.50.50.70.7-0.7
Patch foraging total patch changes 12 sec0.20.30.30.50.5-0.6
Patch foraging total patch changes 18 sec1.52.32.41.51.5-1.6
Patch foraging total patch changes 24 sec1.83.03.01.71.7-1.7
Patch foraging total patch changes 6 sec3.55.45.72.32.3-2.4
Patch foraging time to switch 0 sec1.12.32.4-1.5-1.51.5
Patch foraging water rate 0 sec1.32.82.91.71.7-1.6
Patch foraging water rate 12 sec0.20.30.4-0.6-0.60.6
Patch foraging water rate 18 sec0.40.70.7-0.8-0.80.8
Patch foraging water rate 24 sec0.20.30.30.50.5-0.5
Patch foraging water rate 6 sec0.91.31.41.21.2-1.1
Seeking ratio, delayed vs. immediate footshock2.12.62.61.61.6-1.6
Distance traveled before self-admin3.64.74.72.22.1-2.2
Distance traveled after self-admin0.10.10.10.30.3-0.4
Extensor digitorum longus weight0.72.82.9-1.7-1.71.6
Bone: elastic displacement3.03.53.51.91.9-1.8
Bone: elastic work8.511.111.23.33.3-3.3
Bone: endosteal estimation0.00.00.00.10.1-0.0
Bone: endosteal perimeter0.00.00.0-0.1-0.00.0
Epididymis fat weight7.826.827.8-5.3-5.25.0
Delta time in closed arm before/after self-admin3.02.82.81.71.7-1.6
Delta time in open arm before/after self-admin5.85.86.0-2.4-2.42.3
Diff in mean of infusions in LGA sessions0.60.70.7-0.8-0.80.8
Delay discount exponential model param1.71.82.0-1.3-1.41.4
Extinction: sum of active levers before priming1.11.31.3-1.1-1.11.2
Active lever presses in extinction session 60.50.50.6-0.6-0.70.8
Bone: final force0.40.60.60.70.7-0.8
Bone: final moment0.40.70.70.80.8-0.8
Food consumed during 24 hour testing period0.10.10.20.40.4-0.3
Glucose1.52.42.41.51.5-1.5
Heart weight1.82.72.8-1.7-1.71.6
Delay discount hyperbolic model param2.12.32.4-1.5-1.51.6
Intermittent access intake day 1-15 change0.00.10.1-0.2-0.20.4
Intermittent access intake escalation0.10.10.2-0.3-0.40.5
Intermittent access intake escalation 20.10.20.20.40.4-0.4
Intermitt. access day 1 inactive lever presses0.00.10.20.40.4-0.3
Intermitt. access day 15 inactive lever presses0.30.60.60.80.8-0.7
Intermitt. access escalation Index0.71.01.0-1.0-1.01.0
Intermittent access day 1 total infusions0.10.10.1-0.3-0.30.3
Intermittent access day 15 total infusions0.71.11.1-1.0-1.01.1
Intermittent access terminal intake (last 3 days)0.91.11.2-1.1-1.01.1
Intermittent access total infusions0.20.30.3-0.5-0.50.6
Intermittent access day 1 locomotion0.00.00.0-0.1-0.00.0
Intermittent access day 15 total locomotion0.30.50.5-0.7-0.70.7
Intermittent access total locomotion0.50.60.6-0.7-0.70.8
Intermittent access standard deviation0.00.00.00.10.1-0.1
Left kidney weight0.00.20.2-0.5-0.40.4
Right kidney weight0.10.60.7-0.8-0.80.8
Cocaine induced anxiety0.10.20.20.40.4-0.5
Post-drug Anxiety0.20.20.3-0.5-0.50.5
Baseline Anxiety0.50.50.6-0.7-0.70.8
Tail length0.51.92.0-1.4-1.41.4
Length with tail0.62.52.6-1.6-1.61.5
Length without tail0.30.81.0-1.0-1.00.8
Times rat made contact with spout0.00.00.00.10.10.0
Lifetime Intake0.30.40.4-0.7-0.60.6
Liver weight, left5.08.28.4-2.9-2.92.8
Liver weight, right4.07.07.0-2.7-2.62.6
Locomotor activity0.00.00.00.20.2-0.2
Locomotor testing distance0.10.10.20.30.4-0.4
Locomotor testing rearing0.00.00.00.20.2-0.2
Locomotion in novel chamber2.93.73.81.91.9-1.9
Locomotion in novel chamber post-restriction0.00.00.0-0.0-0.00.0
Fecal boli incidents, locomotor time 11.72.42.5-1.5-1.61.6
Change in fecal boli incidents, locomotor task0.30.30.30.50.5-0.6
Time >=10cm from walls, locomotor time 10.00.00.0-0.2-0.20.2
Bouts of movement, locomotor time 10.50.60.60.70.7-0.8
Total resting periods, locomotor time 10.10.10.10.30.3-0.3
Rest time, locomotor task time 10.20.30.3-0.5-0.60.6
Distance moved, locomotor task time 10.40.60.60.70.8-0.8
Vertical activity count, locomotor time 10.10.30.30.50.5-0.6
Time >=10cm from walls, locomotor time 20.71.01.0-1.0-1.01.0
Bouts of movement, locomotor time 20.20.40.40.60.6-0.6
Total resting periods, locomotor time 20.00.10.10.30.3-0.2
Rest time, locomotor task time 20.10.10.1-0.2-0.30.4
Distance moved, locomotor task time 20.50.60.80.70.8-0.9
Vertical activity count, locomotor time 20.81.11.40.91.0-1.2
Light reinforcement 10.00.00.00.20.2-0.2
Light reinforcement 20.40.60.60.80.8-0.7
Bone: marrow area0.00.00.00.10.1-0.1
Bone: maximum diameter0.40.80.80.80.9-0.9
Bone: maximum force0.61.01.11.01.0-1.0
Bone: maximum moment0.71.21.31.11.1-1.1
Mean time between licks in bursts0.30.80.9-0.9-0.90.9
Mean num. licks in bursts0.30.50.5-0.7-0.70.7
Cd content in liver0.80.91.01.01.0-1.0
Co content in liver0.40.40.50.60.6-0.7
Cu content in liver1.41.71.81.31.3-1.2
Fe content in liver2.12.52.6-1.6-1.61.6
K content in liver0.10.10.1-0.3-0.30.3
Mg content in liver0.60.60.60.80.8-0.7
Mn content in liver0.20.20.20.50.4-0.4
Na content in liver0.00.00.0-0.1-0.0-0.1
Rb content in liver0.10.10.1-0.3-0.30.3
Se content in liver0.50.60.60.80.8-0.7
Sr content in liver0.50.40.4-0.7-0.70.6
Zn content in liver0.40.40.4-0.7-0.60.6
Bone: minimum diameter0.10.20.20.40.4-0.4
Time in familiar zone, hab. session 10.40.40.40.60.6-0.6
Time in novel zone, hab. session 10.20.20.2-0.4-0.40.5
Total zone transitions, hab. session 10.10.10.10.30.3-0.3
Total locomotion distance, hab. session 10.10.10.10.30.3-0.3
Locomotion velocity, hab. session 10.30.50.50.70.7-0.7
Time in familiar zone, hab. session 20.10.10.10.40.3-0.3
Time in novel zone, hab. session 20.20.20.20.40.4-0.5
Total zone transitions, hab. session 20.20.30.3-0.6-0.60.6
Total locomotion distance, hab. session 20.00.00.10.20.2-0.2
Locomotion velocity, hab. session 20.10.10.10.30.3-0.2
Novel to familiar place preference ratio0.80.90.9-0.9-0.90.9
Novelty place preference1.11.21.2-1.1-1.11.1
Time in novel zone, NPP test1.21.21.3-1.1-1.11.1
Total zone transitions, NPP test0.00.00.0-0.1-0.10.1
Total locomotion distance, NPP test0.81.11.21.11.1-1.0
Locomotion velocity, NPP test1.01.41.41.21.2-1.2
Intraocular pressure1.01.51.61.31.2-1.2
Delta distance traveled before/after self-admin3.23.33.4-1.8-1.81.8
Delta ambulatory time before/after self-admin2.12.62.6-1.6-1.61.6
Parametrial fat weight6.314.815.0-3.9-3.93.8
Pavlov. Cond. lever latency0.00.00.0-0.2-0.20.2
Pavlov. Cond. magazine entry latency0.00.00.0-0.1-0.10.1
Pavlov. Cond. change in total contacts0.30.40.40.60.6-0.6
Pavlov. Cond. index score0.00.00.00.20.2-0.2
Pavlov. Cond. latency score0.00.00.00.10.1-0.1
Pavlov. Cond. lever contacts0.00.00.00.10.1-0.2
Pavlov. Cond. magazine entry number0.20.20.2-0.4-0.50.5
Pavlov. Cond. intertrial magazine entries0.20.20.20.50.5-0.4
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.30.3-0.4
Pavlov. Cond. response bias0.00.00.00.10.1-0.2
Pavlov. Cond. lever latency2.53.43.5-1.9-1.91.8
Pavlov. Cond. magazine entry latency0.20.20.30.50.5-0.5
Pavlov. Cond. change in total contacts1.32.12.21.51.5-1.4
Pavlov. Cond. index score2.23.03.11.81.7-1.7
Pavlov. Cond. latency score2.63.53.61.91.9-1.8
Pavlov. Cond. lever contacts1.31.81.91.41.4-1.3
Pavlov. Cond. magazine entry number0.00.00.0-0.2-0.20.1
Pavlov. Cond. intertrial magazine entries0.40.70.7-0.8-0.80.8
Pavlov. Cond. lever-magazine prob. diff.1.72.32.31.51.5-1.5
Pavlov. Cond. response bias1.21.61.61.31.3-1.2
Time in closed arm before self-admin1.11.41.5-1.2-1.21.1
Time in closed arm after self-admin1.21.31.51.11.1-1.2
Time in open arm before self-admin1.41.51.71.31.2-1.1
Time in open arm after self-admin1.11.21.2-1.1-1.11.1
Bone: periosteal estimation0.40.90.90.90.9-1.0
Bone: periosteal perimeter0.40.60.70.80.8-0.9
Bone: post-yield work0.20.30.3-0.5-0.50.5
Progressive ratio test 1 active lever presses0.50.70.70.80.8-0.8
Progressive ratio test 1 breakpoint0.60.80.80.90.9-0.9
Progressive ratio test 1 inactive lever presses1.82.62.61.61.6-1.6
Progressive ratio test 2 active lever presses0.30.40.40.60.6-0.6
Progressive ratio test 2 breakpoint0.30.30.40.60.6-0.5
Progressive ratio test 2 inactive lever presses0.10.10.20.40.4-0.4
Incentive Sensitization - Responses0.00.00.1-0.1-0.20.2
Incentive Sensitization - Breakpoint0.10.10.1-0.2-0.20.3
Sum of active levers in priming session hrs 5-61.81.71.7-1.3-1.31.3
Progressive ratio0.10.10.2-0.3-0.40.4
Food seeking constrained by brief footshock0.10.10.1-0.3-0.30.3
Seeking ratio, punishment vs. effort0.20.20.30.40.5-0.6
Retroperitoneal fat weight0.52.02.1-1.4-1.41.3
Reaction time number correct0.71.31.3-1.2-1.11.1
Reaction time mean minus median0.10.30.4-0.6-0.60.6
Reaction time mean minus median AUC0.92.22.2-1.5-1.51.5
Reaction time num false alarms5.47.77.92.82.8-2.7
Reaction time num false alarms AUC5.07.88.12.82.8-2.7
Reaction time trials correct on left0.71.31.3-1.2-1.11.1
Reaction time trials on left0.71.31.3-1.2-1.21.1
Reaction time mean0.71.11.2-1.0-1.01.1
Reaction time mean AUC0.50.80.9-0.9-0.90.9
Median of all reaction times0.50.80.8-0.9-0.90.9
Reaction time omissions1.21.71.7-1.3-1.31.3
Reaction time false alarm rate5.98.28.42.92.9-2.8
Reaction time premature initiation rate0.10.10.2-0.4-0.40.3
Reaction time premature initiations0.30.50.5-0.7-0.70.6
Std. dev. reaction times0.71.31.4-1.1-1.11.2
Reaction time trials completed0.71.31.3-1.2-1.21.1
Reaction time trials AUC0.61.11.1-1.1-1.11.0
Run reversals in cocaine runway, females0.10.10.1-0.3-0.30.3
Run reversals in cocaine runway, males0.00.00.0-0.2-0.20.2
Latency to leave start box in cocaine runway0.10.10.20.40.3-0.1
Latency to leave start box in cocaine runway, F0.00.00.00.0-0.10.2
Latency to leave start box in cocaine runway, M0.10.00.10.30.2-0.1
Std. dev. time between licks in bursts0.00.00.0-0.1-0.10.1
Total sessions with >9 infusions0.10.10.2-0.4-0.40.3
Short access day 1 total inactive lever presses2.93.83.9-2.0-1.91.9
Short access day 10 total inactive lever presses0.00.00.10.10.2-0.2
Short access day 1 total infusions0.20.30.4-0.6-0.60.5
Short access day 10 total infusions0.10.20.2-0.4-0.40.4
Short access total infusions0.00.00.0-0.2-0.10.1
Short access day 1 locomotion0.10.10.10.20.3-0.3
Short access day 10 total locomotion0.40.70.70.80.8-0.8
Short access total locomotion0.60.70.80.80.9-0.9
One hour access (0.3 mA shock)0.10.10.10.30.3-0.2
Compulsive drug intake0.81.01.0-1.0-1.00.9
One hour access (shock baseline)0.10.20.20.40.4-0.3
Social response proportion2.22.52.5-1.6-1.61.6
Social responses1.92.52.5-1.6-1.61.6
Social time1.21.71.8-1.3-1.31.3
Soleus weight2.26.46.6-2.6-2.62.5
Bone: stiffness1.82.93.0-1.7-1.71.7
Tibialis anterior weight2.89.49.6-3.1-3.13.0
Time to tail flick, vehicle, before self-admin0.00.00.0-0.1-0.10.0
Time to tail flick, vehicle, after self-admin0.40.60.60.80.8-0.8
Time to tail flick, test, before self-admin0.00.00.0-0.1-0.10.1
Time to tail flick, test, after self-admin0.10.10.10.40.3-0.2
Delta time to tail flick, vehicle, before/after SA0.20.20.30.50.5-0.4
Delta time to tail flick, test, before/after SA0.40.40.40.70.6-0.6
Tibia length0.00.10.10.30.3-0.3
Ambulatory time before self-admin1.82.72.91.61.6-1.7
Ambulatory time after self-admin0.00.00.00.00.0-0.0
Bone: tissue strength1.91.92.01.41.4-1.4
Total heroin consumption4.45.25.7-2.2-2.32.4
Bone: trabecular number3.35.45.6-2.3-2.32.4
Bone: trabecular spacing0.30.40.40.60.6-0.7
Bone: trabecular thickness0.00.00.00.10.1-0.1
Bone: trabecular tissue density1.31.91.91.41.4-1.4
Water consumed over 24 hours0.00.00.00.10.1-0.1
Number of responses in last shaping day1.41.61.71.21.3-1.3