Sart1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Sart1 0.04 0.03 6.4e-04 0.03 0.02 0.02 0.02 3.8e-04 2.7e-03 1.9e-03 1.2e-03
2 PL gene expression Sart1 0.05 0.03 2.0e-05 0.05 0.04 0.04 0.04 4.3e-06 2.3e-05 5.0e-05 1.9e-05
3 LHb gene expression Sart1 0.16 0.11 4.7e-03 0.08 0.1 0.08 0.04 6.8e-03 3.0e-03 5.4e-03 4.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.40.7-0.5-0.8-0.6
Area under the delay curve0.30.30.90.20.3-0.9
BMI with tail1.65.38.1-2.8-2.80.4
BMI without tail0.71.52.8-1.7-1.30.1
Body weight3.414.317.4-4.2-4.12.9
Weight adjusted by age2.62.93.3-1.5-1.81.8
Bone surface3.35.88.0-2.7-2.81.4
Bone volume0.91.62.7-1.4-1.60.4
Breakpoint value in progressive ratio session3.63.94.6-1.9-2.11.9
Number of licking bursts0.30.40.4-0.6-0.70.5
Context. condit. distance diff. score2.12.52.91.41.7-1.6
Locomotion velocity, session 10.00.00.1-0.2-0.10.3
Locomotion distance, session 10.40.50.8-0.7-0.9-0.1
Locomotion velocity, session 23.03.44.8-2.2-2.01.3
Locomotion distance, session 20.50.81.3-1.0-1.10.2
Locomotion velocity, session 30.20.30.60.50.2-0.8
Locomotion distance, session 30.00.00.00.10.1-0.2
Stereotopy head waving bouts, day 31.11.31.80.91.1-1.4
Stereotopy head waving duration, day 31.31.51.91.01.3-1.4
Locomotion velocity, session 70.70.81.80.70.4-1.3
Locomotion distance, session 70.10.20.40.40.0-0.6
Stereotopy head waving bouts, day 70.30.40.60.50.5-0.7
Stereotopy head waving duration, day 70.50.61.0-1.0-0.90.3
Locomotion velocity, session 81.21.41.5-1.2-1.21.2
Locomotion distance, session 80.20.30.70.30.5-0.8
Degree of sensitization distance0.10.10.30.2-0.0-0.5
Degree of sensitization stereotypy0.30.30.4-0.6-0.70.3
Conditioned locomotion1.92.22.5-1.4-1.51.6
Cocaine response after cond. corrected1.61.82.11.41.4-1.2
Cocaine response after cond. not corrected1.31.41.51.21.2-1.1
Cocaine response before conditioning0.70.91.1-1.1-0.90.8
Saline control response3.95.16.1-2.4-2.51.9
Bone: connectivity density1.62.54.0-1.8-2.00.5
Bone: cortical apparent density0.30.40.4-0.7-0.60.6
Bone: cortical area0.91.41.7-1.0-1.31.3
Bone: cortical porosity0.10.10.1-0.4-0.2-0.3
Bone: cortical porosity0.40.50.9-1.0-0.60.2
Bone: cortical thickness3.96.58.1-2.2-2.52.8
Bone: cortical thickness1.01.11.9-0.7-1.01.4
Bone: cortical tissue density0.40.50.6-0.8-0.60.7
Condit. Reinf. active minus inactive responses0.10.10.3-0.4-0.50.2
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.20.1
Condit. Reinf. active responses0.10.10.2-0.1-0.40.0
Condit. Reinf. inactive responses0.10.10.10.30.0-0.3
Incentive salience index mean0.20.30.5-0.6-0.70.1
Condit. Reinf. lever presses0.30.40.6-0.7-0.70.5
Condit. Reinf. active minus inactive responses0.20.20.30.50.3-0.6
Condit. Reinf. active-inactive response ratio0.70.70.91.00.7-0.9
Condit. Reinf. active responses0.10.10.20.0-0.2-0.5
Condit. Reinf. inactive responses0.20.20.3-0.6-0.6-0.2
Condit. Reinf. lever presses2.33.24.3-1.8-2.11.4
Condit. Reinf. lever reinforcers received0.10.20.4-0.4-0.6-0.1
Conditioned reinforcement - actives0.10.10.20.50.3-0.1
Conditioned reinforcement - inactives5.86.58.42.92.6-2.1
Conditioned locomotion7.48.810.93.33.2-2.3
Patch foraging indifference point 0 sec0.10.10.10.20.2-0.4
Patch foraging indifference point AUC4.24.85.3-2.3-2.22.0
Delay disc. indifference point, 0s delay1.01.12.10.51.0-1.4
Delay disc. indifference point, 16s delay1.21.21.61.10.9-1.3
Delay disc. indifference point, 2s delay0.20.20.30.30.4-0.5
Delay disc. indifference point, 24s delay0.10.10.10.30.3-0.2
Delay disc. indifference point, 4s delay0.40.40.90.40.5-0.9
Delay disc. indifference point, 8s delay0.20.20.50.10.3-0.7
Indifference point function ln k9.312.915.13.93.8-3.1
Indifference point function log k9.312.915.13.93.8-3.1
Patch foraging total patch changes 0 sec0.00.00.00.10.2-0.1
Patch foraging total patch changes 12 sec5.26.78.3-2.8-2.92.0
Patch foraging total patch changes 18 sec0.60.71.2-1.1-0.90.4
Patch foraging total patch changes 24 sec3.34.04.6-2.1-2.01.9
Patch foraging total patch changes 6 sec1.11.62.4-1.3-1.60.8
Patch foraging time to switch 0 sec1.31.92.9-1.6-1.70.5
Patch foraging water rate 0 sec3.25.17.12.62.7-1.2
Patch foraging water rate 12 sec7.511.515.23.83.9-2.2
Patch foraging water rate 18 sec2.83.74.62.22.0-1.5
Patch foraging water rate 24 sec3.54.96.72.42.6-1.4
Patch foraging water rate 6 sec3.14.56.42.52.4-1.2
Seeking ratio, delayed vs. immediate footshock0.10.10.40.20.1-0.6
Distance traveled before self-admin0.50.50.7-0.9-0.60.6
Distance traveled after self-admin0.20.20.3-0.5-0.40.5
Extensor digitorum longus weight7.830.935.5-5.8-6.04.8
Bone: elastic displacement0.80.91.71.31.0-0.1
Bone: elastic work1.01.21.9-0.8-1.11.4
Bone: endosteal estimation1.32.84.21.41.4-2.0
Bone: endosteal perimeter1.53.24.91.61.5-2.2
Epididymis fat weight3.17.17.92.52.8-2.7
Delta time in closed arm before/after self-admin0.00.00.0-0.0-0.20.2
Delta time in open arm before/after self-admin0.10.10.2-0.2-0.20.4
Diff in mean of infusions in LGA sessions0.60.60.9-0.6-0.81.0
Delay discount exponential model param0.20.20.6-0.1-0.30.8
Extinction: sum of active levers before priming4.34.25.2-2.2-2.31.6
Active lever presses in extinction session 63.53.44.4-1.7-1.72.1
Bone: final force3.04.85.8-2.4-2.31.8
Bone: final moment2.64.24.9-2.2-2.21.7
Food consumed during 24 hour testing period0.10.20.4-0.3-0.20.6
Glucose2.84.25.91.81.9-2.4
Heart weight3.95.65.72.32.4-2.4
Delay discount hyperbolic model param0.20.20.5-0.1-0.20.7
Intermittent access intake day 1-15 change0.40.40.70.80.60.1
Intermittent access intake escalation0.40.40.70.80.6-0.2
Intermittent access intake escalation 20.10.10.10.40.40.4
Intermitt. access day 1 inactive lever presses2.52.73.21.81.7-1.4
Intermitt. access day 15 inactive lever presses2.12.33.71.91.3-1.3
Intermitt. access escalation Index4.54.05.31.81.8-2.3
Intermittent access day 1 total infusions7.08.112.02.62.4-3.5
Intermittent access day 15 total infusions8.39.310.73.32.8-3.0
Intermittent access terminal intake (last 3 days)5.86.47.02.72.3-2.6
Intermittent access total infusions5.35.97.92.41.9-2.8
Intermittent access day 1 locomotion5.15.48.62.11.8-2.9
Intermittent access day 15 total locomotion5.15.56.42.52.1-2.4
Intermittent access total locomotion7.58.611.72.82.5-3.4
Intermittent access standard deviation0.91.01.51.21.0-0.6
Left kidney weight0.51.52.11.31.5-0.9
Right kidney weight0.10.10.30.30.50.3
Cocaine induced anxiety0.00.00.1-0.00.10.2
Post-drug Anxiety1.61.82.8-1.2-1.11.7
Baseline Anxiety3.03.23.6-1.6-1.81.9
Tail length1.03.15.1-1.5-1.32.3
Length with tail2.710.012.1-3.0-3.03.5
Length without tail2.96.47.4-2.3-2.72.5
Times rat made contact with spout0.30.40.6-0.7-0.70.3
Lifetime Intake4.75.47.72.31.8-2.8
Liver weight, left0.10.10.20.30.4-0.2
Liver weight, right0.10.10.10.40.3-0.2
Locomotor activity1.32.03.01.71.6-0.8
Locomotor testing distance1.93.24.42.12.0-1.1
Locomotor testing rearing2.23.44.02.01.9-1.6
Locomotion in novel chamber4.45.46.22.52.4-2.0
Locomotion in novel chamber post-restriction2.83.44.02.01.9-1.7
Fecal boli incidents, locomotor time 10.00.00.1-0.2-0.00.3
Change in fecal boli incidents, locomotor task0.10.10.10.1-0.0-0.4
Time >=10cm from walls, locomotor time 11.21.22.30.80.9-1.5
Bouts of movement, locomotor time 11.61.81.8-1.4-1.31.3
Total resting periods, locomotor time 11.11.21.3-1.1-1.11.0
Rest time, locomotor task time 11.11.21.81.21.3-0.7
Distance moved, locomotor task time 10.10.10.3-0.2-0.5-0.3
Vertical activity count, locomotor time 11.31.41.91.41.1-1.0
Time >=10cm from walls, locomotor time 20.00.00.1-0.3-0.0-0.0
Bouts of movement, locomotor time 20.50.50.7-0.7-0.80.6
Total resting periods, locomotor time 20.20.20.3-0.5-0.60.3
Rest time, locomotor task time 22.52.93.61.61.9-1.6
Distance moved, locomotor task time 21.41.61.9-1.2-1.41.2
Vertical activity count, locomotor time 20.20.20.60.2-0.10.8
Light reinforcement 10.10.20.30.30.6-0.3
Light reinforcement 20.70.91.51.01.2-0.6
Bone: marrow area1.42.94.51.41.5-2.1
Bone: maximum diameter0.20.30.5-0.5-0.50.7
Bone: maximum force3.05.16.8-2.5-2.61.4
Bone: maximum moment2.54.35.9-2.3-2.41.3
Mean time between licks in bursts0.40.60.6-0.8-0.80.8
Mean num. licks in bursts0.20.30.40.50.5-0.6
Cd content in liver1.01.11.51.11.2-0.6
Co content in liver1.01.22.01.11.4-0.5
Cu content in liver0.20.30.5-0.5-0.70.3
Fe content in liver0.10.20.3-0.3-0.40.6
K content in liver1.31.32.1-1.3-1.50.5
Mg content in liver0.30.30.8-0.2-0.4-0.9
Mn content in liver2.83.23.8-1.8-1.91.6
Na content in liver1.51.62.1-1.2-1.11.4
Rb content in liver2.22.74.01.61.3-2.0
Se content in liver0.00.00.10.1-0.2-0.2
Sr content in liver4.13.84.6-1.9-1.72.1
Zn content in liver1.11.21.5-1.2-1.20.8
Bone: minimum diameter1.32.44.41.31.1-2.1
Time in familiar zone, hab. session 10.40.40.50.70.4-0.7
Time in novel zone, hab. session 10.10.10.30.20.50.0
Total zone transitions, hab. session 10.70.91.5-0.9-1.20.7
Total locomotion distance, hab. session 10.40.60.80.70.7-0.9
Locomotion velocity, hab. session 10.10.10.20.20.2-0.4
Time in familiar zone, hab. session 20.00.00.10.20.00.3
Time in novel zone, hab. session 20.10.10.1-0.3-0.2-0.3
Total zone transitions, hab. session 20.91.21.8-1.4-1.3-0.2
Total locomotion distance, hab. session 20.30.41.20.00.2-1.1
Locomotion velocity, hab. session 20.40.61.50.20.4-1.2
Novel to familiar place preference ratio0.80.81.1-1.0-1.00.7
Novelty place preference0.30.30.4-0.6-0.60.3
Time in novel zone, NPP test0.20.20.3-0.5-0.50.2
Total zone transitions, NPP test2.02.84.0-2.0-1.81.0
Total locomotion distance, NPP test0.00.10.1-0.3-0.1-0.3
Locomotion velocity, NPP test0.00.10.1-0.3-0.2-0.2
Intraocular pressure0.60.81.61.01.2-0.2
Delta distance traveled before/after self-admin0.00.00.10.20.00.0
Delta ambulatory time before/after self-admin0.00.00.00.1-0.00.1
Parametrial fat weight3.26.37.72.22.6-2.8
Pavlov. Cond. lever latency0.20.20.40.70.5-0.2
Pavlov. Cond. magazine entry latency0.10.10.2-0.4-0.3-0.4
Pavlov. Cond. change in total contacts0.00.00.0-0.2-0.1-0.1
Pavlov. Cond. index score0.10.10.2-0.4-0.20.2
Pavlov. Cond. latency score0.00.00.1-0.3-0.1-0.0
Pavlov. Cond. lever contacts0.00.00.0-0.10.0-0.1
Pavlov. Cond. magazine entry number0.20.20.30.50.5-0.5
Pavlov. Cond. intertrial magazine entries0.20.30.60.80.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.20.30.4-0.6-0.50.3
Pavlov. Cond. response bias0.10.10.1-0.3-0.30.3
Pavlov. Cond. lever latency0.50.70.90.90.9-0.7
Pavlov. Cond. magazine entry latency3.43.95.7-2.0-2.41.5
Pavlov. Cond. change in total contacts1.82.43.4-1.6-1.81.1
Pavlov. Cond. index score2.43.14.3-1.8-2.11.4
Pavlov. Cond. latency score2.02.53.5-1.6-1.91.2
Pavlov. Cond. lever contacts0.70.91.0-0.9-0.91.0
Pavlov. Cond. magazine entry number6.37.610.22.83.2-2.2
Pavlov. Cond. intertrial magazine entries1.11.42.11.11.4-1.1
Pavlov. Cond. lever-magazine prob. diff.2.93.85.1-2.0-2.31.5
Pavlov. Cond. response bias2.02.73.2-1.7-1.81.4
Time in closed arm before self-admin0.00.00.1-0.20.0-0.0
Time in closed arm after self-admin0.00.00.10.30.1-0.2
Time in open arm before self-admin0.50.50.60.80.7-0.8
Time in open arm after self-admin0.10.10.20.40.4-0.0
Bone: periosteal estimation0.00.10.10.20.0-0.3
Bone: periosteal perimeter0.00.10.2-0.2-0.4-0.0
Bone: post-yield work0.70.91.9-0.7-0.6-1.4
Progressive ratio test 1 active lever presses2.93.13.61.91.6-1.8
Progressive ratio test 1 breakpoint2.52.63.31.81.5-1.6
Progressive ratio test 1 inactive lever presses1.41.51.81.31.1-1.3
Progressive ratio test 2 active lever presses4.14.55.62.41.8-2.1
Progressive ratio test 2 breakpoint4.95.57.42.72.2-2.1
Progressive ratio test 2 inactive lever presses9.310.711.83.43.1-3.3
Incentive Sensitization - Responses0.40.40.60.80.3-0.7
Incentive Sensitization - Breakpoint0.60.60.91.00.5-0.8
Sum of active levers in priming session hrs 5-63.02.95.0-1.2-1.52.2
Progressive ratio1.41.62.9-1.7-1.40.2
Food seeking constrained by brief footshock0.20.20.3-0.3-0.60.5
Seeking ratio, punishment vs. effort1.21.52.71.61.3-0.4
Retroperitoneal fat weight6.120.121.34.64.5-4.3
Reaction time number correct0.50.71.2-0.8-0.61.1
Reaction time mean minus median3.14.04.5-2.1-2.11.8
Reaction time mean minus median AUC2.02.62.8-1.6-1.61.7
Reaction time num false alarms0.20.20.50.70.4-0.1
Reaction time num false alarms AUC0.10.10.3-0.0-0.30.5
Reaction time trials correct on left0.50.71.2-0.8-0.61.1
Reaction time trials on left0.70.91.5-0.9-0.71.2
Reaction time mean0.00.00.1-0.3-0.20.2
Reaction time mean AUC0.00.00.0-0.2-0.10.1
Median of all reaction times0.10.10.10.20.3-0.3
Reaction time omissions1.41.92.1-1.3-1.41.4
Reaction time false alarm rate0.10.20.40.70.4-0.2
Reaction time premature initiation rate2.53.43.6-1.9-1.81.8
Reaction time premature initiations4.56.37.1-2.5-2.42.7
Std. dev. reaction times0.81.21.4-1.2-1.11.0
Reaction time trials completed0.70.91.5-0.9-0.71.2
Reaction time trials AUC0.40.61.0-0.6-0.51.0
Run reversals in cocaine runway, females0.30.30.4-0.6-0.7-0.4
Run reversals in cocaine runway, males0.30.30.40.50.40.6
Latency to leave start box in cocaine runway0.10.20.40.20.0-0.7
Latency to leave start box in cocaine runway, F0.10.10.2-0.0-0.1-0.4
Latency to leave start box in cocaine runway, M0.00.00.00.2-0.1-0.0
Std. dev. time between licks in bursts0.00.10.10.20.30.2
Total sessions with >9 infusions2.22.43.41.51.3-1.8
Short access day 1 total inactive lever presses4.24.75.22.32.0-2.2
Short access day 10 total inactive lever presses3.74.04.92.22.0-1.7
Short access day 1 total infusions4.14.47.01.81.7-2.6
Short access day 10 total infusions2.62.96.01.40.9-2.5
Short access total infusions2.02.34.31.31.0-2.1
Short access day 1 locomotion3.23.45.41.81.2-2.3
Short access day 10 total locomotion2.32.54.41.51.1-2.1
Short access total locomotion2.02.13.91.30.9-2.0
One hour access (0.3 mA shock)10.111.813.93.73.4-3.2
Compulsive drug intake2.82.93.2-1.7-1.61.8
One hour access (shock baseline)8.910.312.13.53.1-3.0
Social response proportion0.80.91.1-1.1-1.00.7
Social responses0.30.30.4-0.4-0.70.6
Social time0.40.60.7-0.7-0.80.8
Soleus weight4.212.214.23.73.8-3.0
Bone: stiffness2.33.64.9-2.2-2.21.0
Tibialis anterior weight12.643.144.3-6.6-6.76.5
Time to tail flick, vehicle, before self-admin0.30.30.5-0.7-0.60.2
Time to tail flick, vehicle, after self-admin1.01.11.6-1.3-1.20.4
Time to tail flick, test, before self-admin1.21.12.30.80.6-1.5
Time to tail flick, test, after self-admin0.00.00.1-0.2-0.00.2
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.7-0.70.2
Delta time to tail flick, test, before/after SA2.32.03.9-1.2-0.82.0
Tibia length1.44.05.3-1.8-1.82.3
Ambulatory time before self-admin0.40.40.4-0.7-0.60.6
Ambulatory time after self-admin0.10.10.20.30.3-0.5
Bone: tissue strength0.10.10.2-0.4-0.20.0
Total heroin consumption5.97.07.6-2.8-2.72.4
Bone: trabecular number0.30.40.9-0.5-1.0-0.2
Bone: trabecular spacing0.10.20.40.30.6-0.2
Bone: trabecular thickness0.91.01.71.00.6-1.3
Bone: trabecular tissue density3.24.66.02.32.4-1.5
Water consumed over 24 hours0.80.91.1-1.1-1.00.8
Number of responses in last shaping day1.11.11.61.31.0-0.9