Rnf169

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Rnf169 0.03 0.03 2.5e-03 0.02 0.01 0.01 0.01 1.9e-03 1.5e-02 1.9e-02 6.9e-03
2 NAcc gene expression Rnf169 0.03 0.02 6.3e-03 0.01 0.01 0.01 0.01 1.3e-02 6.4e-02 1.7e-02 2.7e-02
3 PL gene expression Rnf169 0.03 0.03 2.5e-03 0.02 0.02 0.02 0.02 1.0e-03 2.2e-03 2.1e-03 2.1e-03
4 pVTA gene expression Rnf169 0.08 0.06 5.8e-03 0.02 0.04 0.03 0.03 4.6e-02 5.5e-03 1.5e-02 1.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.60.40.40.4-0.8
Area under the delay curve0.00.00.10.00.00.00.3
BMI with tail0.00.10.3-0.1-0.1-0.10.5
BMI without tail1.42.95.7-1.4-1.4-1.42.4
Body weight0.73.07.0-1.3-1.3-1.32.6
Weight adjusted by age1.11.31.9-1.0-1.0-1.01.4
Bone surface0.81.41.6-1.3-1.3-1.30.9
Bone volume0.40.70.9-0.9-0.9-0.90.6
Breakpoint value in progressive ratio session0.40.40.60.60.60.6-0.8
Number of licking bursts3.84.55.52.32.32.3-1.2
Context. condit. distance diff. score1.51.92.4-1.5-1.5-1.50.5
Locomotion velocity, session 10.60.61.10.70.70.7-1.1
Locomotion distance, session 10.30.40.6-0.8-0.8-0.80.0
Locomotion velocity, session 20.10.10.1-0.3-0.3-0.30.3
Locomotion distance, session 20.30.40.5-0.7-0.7-0.70.2
Locomotion velocity, session 30.20.20.3-0.6-0.6-0.6-0.2
Locomotion distance, session 30.50.50.7-0.8-0.8-0.8-0.2
Stereotopy head waving bouts, day 30.10.10.10.40.40.40.3
Stereotopy head waving duration, day 30.00.00.0-0.1-0.1-0.1-0.1
Locomotion velocity, session 70.40.40.50.60.60.6-0.7
Locomotion distance, session 70.10.10.10.40.40.4-0.2
Stereotopy head waving bouts, day 71.82.02.6-1.6-1.6-1.60.7
Stereotopy head waving duration, day 72.73.23.9-2.0-2.0-2.01.1
Locomotion velocity, session 80.50.70.8-0.9-0.9-0.90.4
Locomotion distance, session 81.72.63.2-1.8-1.8-1.80.8
Degree of sensitization distance0.30.31.00.20.20.21.0
Degree of sensitization stereotypy4.24.65.8-2.4-2.4-2.41.1
Conditioned locomotion0.20.20.40.40.40.4-0.6
Cocaine response after cond. corrected1.11.21.61.31.31.3-0.3
Cocaine response after cond. not corrected0.30.40.50.70.70.7-0.2
Cocaine response before conditioning0.81.01.3-1.2-1.2-1.20.1
Saline control response2.83.63.8-1.9-1.9-1.91.8
Bone: connectivity density0.10.20.50.20.20.2-0.7
Bone: cortical apparent density1.11.51.91.41.41.4-0.5
Bone: cortical area0.60.91.0-0.9-0.9-0.91.0
Bone: cortical porosity0.40.40.5-0.7-0.7-0.7-0.1
Bone: cortical porosity0.30.30.4-0.6-0.6-0.6-0.2
Bone: cortical thickness0.20.30.30.50.50.5-0.5
Bone: cortical thickness0.00.00.1-0.2-0.2-0.2-0.1
Bone: cortical tissue density1.21.62.01.41.41.4-0.5
Condit. Reinf. active minus inactive responses0.40.50.8-0.6-0.6-0.60.9
Condit. Reinf. active-inactive response ratio1.11.21.7-1.0-1.0-1.01.3
Condit. Reinf. active responses0.10.10.2-0.2-0.2-0.20.4
Condit. Reinf. inactive responses0.10.10.10.30.30.3-0.4
Incentive salience index mean0.50.60.8-0.7-0.7-0.70.9
Condit. Reinf. lever presses0.20.20.2-0.5-0.5-0.50.5
Condit. Reinf. active minus inactive responses9.812.213.0-3.6-3.6-3.63.1
Condit. Reinf. active-inactive response ratio2.12.22.5-1.6-1.6-1.61.2
Condit. Reinf. active responses13.118.118.9-4.3-4.3-4.34.0
Condit. Reinf. inactive responses7.89.79.8-3.1-3.1-3.13.0
Condit. Reinf. lever presses21.028.531.8-5.6-5.6-5.64.3
Condit. Reinf. lever reinforcers received14.219.921.1-4.6-4.6-4.64.0
Conditioned reinforcement - actives2.12.12.8-1.7-1.7-1.70.4
Conditioned reinforcement - inactives0.00.00.10.20.20.20.0
Conditioned locomotion1.41.72.2-1.5-1.5-1.5-0.1
Patch foraging indifference point 0 sec4.26.87.7-2.8-2.8-2.82.1
Patch foraging indifference point AUC0.40.40.9-0.5-0.5-0.51.0
Delay disc. indifference point, 0s delay1.11.21.2-1.1-1.1-1.10.9
Delay disc. indifference point, 16s delay0.10.10.10.30.30.3-0.3
Delay disc. indifference point, 2s delay1.41.52.1-1.2-1.2-1.21.4
Delay disc. indifference point, 24s delay1.00.91.01.01.01.0-0.8
Delay disc. indifference point, 4s delay1.61.72.3-1.2-1.2-1.21.5
Delay disc. indifference point, 8s delay0.00.00.1-0.1-0.1-0.10.3
Indifference point function ln k0.30.40.5-0.7-0.7-0.7-0.4
Indifference point function log k0.30.40.5-0.7-0.7-0.7-0.4
Patch foraging total patch changes 0 sec3.55.76.3-2.5-2.5-2.51.9
Patch foraging total patch changes 12 sec2.53.23.6-1.8-1.8-1.81.9
Patch foraging total patch changes 18 sec3.14.04.2-2.1-2.1-2.11.8
Patch foraging total patch changes 24 sec1.82.22.4-1.5-1.5-1.51.6
Patch foraging total patch changes 6 sec0.71.01.2-1.1-1.1-1.10.6
Patch foraging time to switch 0 sec4.16.36.72.62.62.6-2.2
Patch foraging water rate 0 sec3.15.05.7-2.4-2.4-2.41.6
Patch foraging water rate 12 sec1.21.92.3-1.5-1.5-1.50.7
Patch foraging water rate 18 sec1.31.71.9-1.4-1.4-1.41.1
Patch foraging water rate 24 sec0.30.40.6-0.8-0.8-0.8-0.3
Patch foraging water rate 6 sec0.50.81.0-1.0-1.0-1.00.2
Seeking ratio, delayed vs. immediate footshock2.32.72.81.71.71.7-1.6
Distance traveled before self-admin0.70.80.90.90.90.9-0.6
Distance traveled after self-admin1.31.52.91.01.01.0-1.7
Extensor digitorum longus weight0.10.31.0-0.1-0.1-0.11.0
Bone: elastic displacement3.23.63.71.91.91.9-1.8
Bone: elastic work3.14.04.22.02.02.0-2.0
Bone: endosteal estimation2.14.65.7-2.1-2.1-2.12.4
Bone: endosteal perimeter2.65.46.1-2.3-2.3-2.32.5
Epididymis fat weight0.20.41.60.20.20.21.3
Delta time in closed arm before/after self-admin0.40.30.80.40.40.40.9
Delta time in open arm before/after self-admin3.43.23.6-1.9-1.9-1.91.5
Diff in mean of infusions in LGA sessions2.73.03.51.91.91.9-1.2
Delay discount exponential model param0.00.00.1-0.1-0.1-0.1-0.3
Extinction: sum of active levers before priming0.00.00.10.20.20.20.0
Active lever presses in extinction session 60.80.70.9-1.0-1.0-1.0-0.3
Bone: final force0.00.00.00.10.10.1-0.0
Bone: final moment0.00.00.0-0.2-0.2-0.20.2
Food consumed during 24 hour testing period2.73.34.1-2.0-2.0-2.01.0
Glucose0.00.00.1-0.1-0.1-0.1-0.2
Heart weight1.11.51.8-1.3-1.3-1.30.8
Delay discount hyperbolic model param0.10.10.30.20.20.2-0.6
Intermittent access intake day 1-15 change0.50.50.7-0.8-0.8-0.80.3
Intermittent access intake escalation0.60.60.8-0.9-0.9-0.90.3
Intermittent access intake escalation 20.50.50.5-0.7-0.7-0.70.5
Intermitt. access day 1 inactive lever presses0.20.20.20.50.50.5-0.1
Intermitt. access day 15 inactive lever presses0.00.00.1-0.1-0.1-0.1-0.3
Intermitt. access escalation Index0.30.30.3-0.6-0.6-0.60.3
Intermittent access day 1 total infusions1.31.51.7-1.3-1.3-1.31.0
Intermittent access day 15 total infusions1.41.51.9-1.4-1.4-1.40.6
Intermittent access terminal intake (last 3 days)1.61.82.2-1.5-1.5-1.50.8
Intermittent access total infusions1.21.31.5-1.2-1.2-1.20.7
Intermittent access day 1 locomotion0.00.00.1-0.2-0.2-0.2-0.2
Intermittent access day 15 total locomotion1.01.11.4-1.2-1.2-1.20.3
Intermittent access total locomotion0.60.70.8-0.9-0.9-0.90.4
Intermittent access standard deviation0.30.30.3-0.5-0.5-0.50.5
Left kidney weight1.85.17.6-2.1-2.1-2.12.8
Right kidney weight1.13.24.6-1.6-1.6-1.62.2
Cocaine induced anxiety2.02.42.71.61.61.6-1.1
Post-drug Anxiety0.60.60.80.90.90.9-0.4
Baseline Anxiety1.21.31.3-1.2-1.2-1.21.1
Tail length4.112.520.7-3.1-3.1-3.14.5
Length with tail1.65.812.0-2.0-2.0-2.03.5
Length without tail0.30.60.70.80.80.8-0.6
Times rat made contact with spout0.10.10.30.20.20.20.5
Lifetime Intake1.31.51.8-1.3-1.3-1.30.8
Liver weight, left0.20.30.70.40.40.40.8
Liver weight, right0.30.61.10.60.60.61.1
Locomotor activity0.50.81.0-1.0-1.0-1.00.5
Locomotor testing distance2.33.84.1-2.0-2.0-2.01.7
Locomotor testing rearing1.31.93.1-1.2-1.2-1.21.8
Locomotion in novel chamber0.30.40.4-0.7-0.7-0.7-0.5
Locomotion in novel chamber post-restriction1.11.41.8-1.3-1.3-1.30.3
Fecal boli incidents, locomotor time 10.30.30.4-0.6-0.6-0.6-0.1
Change in fecal boli incidents, locomotor task0.90.91.01.01.01.0-0.7
Time >=10cm from walls, locomotor time 11.01.01.3-1.1-1.1-1.10.4
Bouts of movement, locomotor time 10.20.20.3-0.5-0.5-0.50.1
Total resting periods, locomotor time 10.10.10.2-0.1-0.1-0.1-0.5
Rest time, locomotor task time 10.20.30.60.40.40.4-0.8
Distance moved, locomotor task time 10.60.71.4-0.7-0.7-0.71.2
Vertical activity count, locomotor time 10.60.61.2-0.7-0.7-0.71.1
Time >=10cm from walls, locomotor time 21.61.71.9-1.4-1.4-1.41.0
Bouts of movement, locomotor time 21.01.11.3-1.0-1.0-1.01.1
Total resting periods, locomotor time 20.40.50.7-0.6-0.6-0.60.9
Rest time, locomotor task time 24.04.55.12.32.32.3-1.7
Distance moved, locomotor task time 24.65.35.7-2.4-2.4-2.42.1
Vertical activity count, locomotor time 22.32.52.9-1.5-1.5-1.51.7
Light reinforcement 12.54.55.62.42.42.4-1.2
Light reinforcement 20.60.80.80.90.90.9-0.9
Bone: marrow area1.83.95.1-1.9-1.9-1.92.3
Bone: maximum diameter2.54.64.6-2.2-2.2-2.22.1
Bone: maximum force0.00.00.0-0.2-0.2-0.20.2
Bone: maximum moment0.10.20.2-0.5-0.5-0.50.4
Mean time between licks in bursts8.011.313.4-3.2-3.2-3.23.7
Mean num. licks in bursts3.44.14.9-2.2-2.2-2.21.3
Cd content in liver0.20.20.20.50.50.50.2
Co content in liver2.32.73.1-1.6-1.6-1.61.8
Cu content in liver1.62.02.7-1.3-1.3-1.31.6
Fe content in liver0.00.00.00.10.10.10.1
K content in liver0.10.10.10.30.30.30.3
Mg content in liver0.20.20.3-0.4-0.4-0.40.5
Mn content in liver2.52.83.51.61.61.6-1.9
Na content in liver0.20.20.2-0.5-0.5-0.50.2
Rb content in liver0.91.11.2-1.1-1.1-1.11.0
Se content in liver4.25.15.62.42.42.4-1.9
Sr content in liver0.20.20.30.30.30.3-0.6
Zn content in liver5.45.96.7-2.6-2.6-2.61.9
Bone: minimum diameter1.12.14.2-1.2-1.2-1.22.0
Time in familiar zone, hab. session 10.10.10.1-0.1-0.1-0.10.4
Time in novel zone, hab. session 10.20.20.30.50.50.5-0.3
Total zone transitions, hab. session 10.10.20.60.20.20.2-0.8
Total locomotion distance, hab. session 10.20.20.40.50.50.50.6
Locomotion velocity, hab. session 10.10.10.30.30.30.30.5
Time in familiar zone, hab. session 21.92.02.2-1.5-1.5-1.51.2
Time in novel zone, hab. session 20.60.60.60.80.80.8-0.8
Total zone transitions, hab. session 20.70.91.2-1.1-1.1-1.10.2
Total locomotion distance, hab. session 20.40.61.6-0.5-0.5-0.51.3
Locomotion velocity, hab. session 20.40.51.7-0.4-0.4-0.41.3
Novel to familiar place preference ratio0.00.00.1-0.2-0.2-0.20.1
Novelty place preference0.00.00.1-0.2-0.2-0.20.1
Time in novel zone, NPP test0.10.10.2-0.4-0.4-0.40.2
Total zone transitions, NPP test0.10.10.1-0.3-0.3-0.3-0.3
Total locomotion distance, NPP test0.10.10.40.20.20.20.7
Locomotion velocity, NPP test0.20.30.30.50.50.50.4
Intraocular pressure0.10.10.2-0.2-0.2-0.2-0.5
Delta distance traveled before/after self-admin0.40.40.5-0.7-0.7-0.7-0.3
Delta ambulatory time before/after self-admin0.30.30.3-0.6-0.6-0.6-0.5
Parametrial fat weight0.40.81.01.01.01.00.5
Pavlov. Cond. lever latency1.62.02.21.51.51.5-1.2
Pavlov. Cond. magazine entry latency3.74.85.1-2.3-2.3-2.31.9
Pavlov. Cond. change in total contacts1.92.02.1-1.5-1.5-1.51.2
Pavlov. Cond. index score3.94.95.3-2.3-2.3-2.32.0
Pavlov. Cond. latency score3.74.75.1-2.3-2.3-2.31.9
Pavlov. Cond. lever contacts1.92.32.3-1.5-1.5-1.51.4
Pavlov. Cond. magazine entry number4.05.05.52.32.32.3-1.8
Pavlov. Cond. intertrial magazine entries1.41.61.71.31.31.3-1.2
Pavlov. Cond. lever-magazine prob. diff.3.13.94.2-2.0-2.0-2.01.7
Pavlov. Cond. response bias1.72.12.2-1.5-1.5-1.51.4
Pavlov. Cond. lever latency20.527.731.35.65.65.6-4.1
Pavlov. Cond. magazine entry latency3.64.25.1-2.3-2.3-2.31.3
Pavlov. Cond. change in total contacts14.820.423.5-4.8-4.8-4.83.3
Pavlov. Cond. index score15.319.722.5-4.7-4.7-4.73.4
Pavlov. Cond. latency score13.516.819.3-4.4-4.4-4.43.1
Pavlov. Cond. lever contacts21.329.132.9-5.7-5.7-5.74.2
Pavlov. Cond. magazine entry number6.78.29.83.13.13.1-1.8
Pavlov. Cond. intertrial magazine entries0.40.51.5-0.4-0.4-0.41.2
Pavlov. Cond. lever-magazine prob. diff.14.718.821.2-4.6-4.6-4.63.4
Pavlov. Cond. response bias20.828.332.4-5.7-5.7-5.74.0
Time in closed arm before self-admin0.50.60.7-0.8-0.8-0.8-0.8
Time in closed arm after self-admin1.31.42.31.01.01.0-1.5
Time in open arm before self-admin2.83.13.92.02.02.0-0.8
Time in open arm after self-admin0.91.02.3-0.7-0.7-0.71.5
Bone: periosteal estimation1.83.84.5-1.9-1.9-1.92.1
Bone: periosteal perimeter2.03.33.6-1.8-1.8-1.81.9
Bone: post-yield work0.10.20.2-0.5-0.5-0.50.3
Progressive ratio test 1 active lever presses0.10.10.10.40.40.4-0.4
Progressive ratio test 1 breakpoint0.00.00.10.20.20.2-0.2
Progressive ratio test 1 inactive lever presses0.30.30.4-0.5-0.5-0.50.6
Progressive ratio test 2 active lever presses1.31.41.5-1.2-1.2-1.21.1
Progressive ratio test 2 breakpoint1.41.61.7-1.3-1.3-1.31.1
Progressive ratio test 2 inactive lever presses0.50.60.8-0.9-0.9-0.90.4
Incentive Sensitization - Responses3.33.43.7-1.9-1.9-1.91.6
Incentive Sensitization - Breakpoint2.92.93.3-1.8-1.8-1.81.4
Sum of active levers in priming session hrs 5-60.20.20.20.40.40.4-0.4
Progressive ratio0.00.00.10.10.10.1-0.3
Food seeking constrained by brief footshock1.92.32.8-1.5-1.5-1.51.7
Seeking ratio, punishment vs. effort1.72.13.1-1.3-1.3-1.31.8
Retroperitoneal fat weight0.82.72.81.71.71.71.5
Reaction time number correct0.30.41.30.40.40.4-1.1
Reaction time mean minus median0.91.11.4-1.0-1.0-1.01.2
Reaction time mean minus median AUC0.81.11.2-1.1-1.1-1.10.9
Reaction time num false alarms1.41.82.41.51.51.5-0.5
Reaction time num false alarms AUC0.81.11.41.21.21.2-0.5
Reaction time trials correct on left0.30.41.30.40.40.4-1.1
Reaction time trials on left0.30.41.30.40.40.4-1.1
Reaction time mean0.40.60.80.90.90.9-0.1
Reaction time mean AUC0.91.21.61.21.21.2-0.4
Median of all reaction times1.11.51.91.41.41.4-0.6
Reaction time omissions0.10.20.30.50.50.50.1
Reaction time false alarm rate0.60.91.11.11.11.1-0.1
Reaction time premature initiation rate2.93.86.2-1.7-1.7-1.72.5
Reaction time premature initiations1.62.22.5-1.4-1.4-1.41.6
Std. dev. reaction times0.60.81.8-0.7-0.7-0.71.3
Reaction time trials completed0.30.41.30.40.40.4-1.1
Reaction time trials AUC0.20.30.90.30.30.3-0.9
Run reversals in cocaine runway, females0.80.83.1-0.1-0.1-0.11.8
Run reversals in cocaine runway, males0.10.10.10.30.30.3-0.3
Latency to leave start box in cocaine runway1.82.02.61.61.61.6-0.4
Latency to leave start box in cocaine runway, F0.91.01.31.21.21.20.3
Latency to leave start box in cocaine runway, M0.90.91.00.90.90.9-1.0
Std. dev. time between licks in bursts2.93.55.7-1.7-1.7-1.72.4
Total sessions with >9 infusions1.82.02.5-1.6-1.6-1.60.7
Short access day 1 total inactive lever presses0.30.30.40.60.60.6-0.5
Short access day 10 total inactive lever presses0.10.10.20.30.30.3-0.5
Short access day 1 total infusions2.93.13.5-1.9-1.9-1.91.4
Short access day 10 total infusions2.22.52.7-1.7-1.7-1.71.3
Short access total infusions1.21.31.4-1.2-1.2-1.21.0
Short access day 1 locomotion0.60.70.9-1.0-1.0-1.00.0
Short access day 10 total locomotion0.70.80.9-0.9-0.9-0.90.6
Short access total locomotion0.20.20.2-0.5-0.5-0.50.2
One hour access (0.3 mA shock)2.52.93.4-1.9-1.9-1.91.1
Compulsive drug intake0.20.20.40.40.40.4-0.6
One hour access (shock baseline)2.22.63.0-1.7-1.7-1.71.1
Social response proportion0.10.10.20.40.40.40.1
Social responses0.10.20.50.20.20.20.7
Social time3.85.05.52.32.32.3-1.9
Soleus weight0.30.93.2-0.4-0.4-0.41.8
Bone: stiffness0.00.10.10.20.20.20.3
Tibialis anterior weight0.20.71.3-0.7-0.7-0.71.1
Time to tail flick, vehicle, before self-admin0.10.10.20.20.20.2-0.4
Time to tail flick, vehicle, after self-admin1.21.31.6-1.3-1.3-1.30.6
Time to tail flick, test, before self-admin0.70.70.9-0.8-0.8-0.80.9
Time to tail flick, test, after self-admin1.11.21.9-1.0-1.0-1.01.4
Delta time to tail flick, vehicle, before/after SA0.80.80.9-1.0-1.0-1.00.7
Delta time to tail flick, test, before/after SA0.20.20.20.50.50.5-0.2
Tibia length0.92.63.4-1.9-1.9-1.90.3
Ambulatory time before self-admin1.11.11.11.11.11.1-1.0
Ambulatory time after self-admin1.31.43.70.80.80.8-1.9
Bone: tissue strength1.01.02.10.80.80.8-1.4
Total heroin consumption0.10.10.1-0.4-0.4-0.40.0
Bone: trabecular number1.42.22.71.41.41.4-1.6
Bone: trabecular spacing0.71.01.1-1.1-1.1-1.10.7
Bone: trabecular thickness0.10.20.20.50.50.5-0.1
Bone: trabecular tissue density0.40.50.60.70.70.70.6
Water consumed over 24 hours0.81.01.01.01.01.0-1.0
Number of responses in last shaping day0.60.60.9-0.7-0.7-0.71.0