Rnaseh2c

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Rnaseh2c 0.05 0.04 1.8e-03 -0 0.02 0.01 0 5.9e-01 1.6e-02 4.2e-02 1.3e-01
2 PL gene expression Rnaseh2c 0.02 0.01 9.4e-03 0.02 0.02 0.01 0.02 9.5e-04 7.0e-03 8.7e-03 3.7e-03
3 NAcc gene expression Rnaseh2c 0.11 0.06 6.1e-08 0.01 0.03 0.03 0.04 1.8e-03 1.9e-05 6.7e-06 3.0e-06
4 Eye isoform ratio NM_001401703.1 0.35 0.18 9.9e-03 0.09 0.04 -0 0.05 1.6e-02 7.6e-02 3.5e-01 6.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.32.4-1.61.0-1.1-0.7
Area under the delay curve0.10.10.3-0.3-0.30.5-0.1
BMI with tail2.38.016.3-4.02.5-2.3-2.1
BMI without tail0.63.05.9-2.41.6-0.9-1.6
Body weight2.912.717.2-4.13.6-2.8-3.5
Weight adjusted by age0.61.92.7-1.31.4-1.6-1.0
Bone surface5.19.912.6-3.53.1-3.5-2.3
Bone volume2.24.36.6-2.51.8-2.6-1.0
Breakpoint value in progressive ratio session2.54.55.4-2.22.2-2.3-1.6
Number of licking bursts0.20.61.0-0.80.8-1.0-0.4
Context. condit. distance diff. score2.12.53.31.5-1.81.61.3
Locomotion velocity, session 10.20.20.40.4-0.00.6-0.5
Locomotion distance, session 10.60.81.3-1.10.8-0.3-1.0
Locomotion velocity, session 23.13.74.4-2.12.0-1.5-2.0
Locomotion distance, session 20.81.21.8-1.31.0-0.4-1.3
Locomotion velocity, session 30.10.10.2-0.0-0.30.50.2
Locomotion distance, session 30.00.00.00.1-0.10.20.1
Stereotopy head waving bouts, day 30.70.91.60.5-1.11.30.6
Stereotopy head waving duration, day 30.81.01.60.7-1.31.00.9
Locomotion velocity, session 70.10.20.3-0.3-0.50.20.5
Locomotion distance, session 70.10.20.4-0.2-0.10.6-0.4
Stereotopy head waving bouts, day 70.30.30.6-0.4-0.1-0.70.8
Stereotopy head waving duration, day 71.11.32.5-1.40.9-1.6-0.2
Locomotion velocity, session 80.80.92.2-0.51.1-0.2-1.5
Locomotion distance, session 80.20.20.40.1-0.70.50.4
Degree of sensitization distance0.10.10.1-0.4-0.00.3-0.4
Degree of sensitization stereotypy1.01.12.5-1.20.8-1.60.1
Conditioned locomotion1.41.62.0-1.21.4-1.0-1.4
Cocaine response after cond. corrected1.31.93.41.4-1.31.80.8
Cocaine response after cond. not corrected0.91.42.11.2-1.11.50.8
Cocaine response before conditioning1.01.22.5-1.11.0-1.6-0.4
Saline control response3.64.96.5-2.12.6-1.5-2.5
Bone: connectivity density2.84.56.5-2.62.1-1.9-1.8
Bone: cortical apparent density0.00.10.1-0.10.4-0.2-0.3
Bone: cortical area0.91.42.1-1.11.3-1.5-0.9
Bone: cortical porosity0.20.20.4-0.60.3-0.2-0.5
Bone: cortical porosity0.50.60.9-1.00.7-0.4-0.9
Bone: cortical thickness2.64.46.9-1.52.6-1.5-2.4
Bone: cortical thickness0.50.71.5-0.21.00.3-1.2
Bone: cortical tissue density0.10.20.3-0.20.5-0.3-0.5
Condit. Reinf. active minus inactive responses0.20.20.4-0.60.5-0.4-0.3
Condit. Reinf. active-inactive response ratio0.00.00.0-0.20.1-0.2-0.1
Condit. Reinf. active responses0.20.20.4-0.60.4-0.60.0
Condit. Reinf. inactive responses0.10.10.2-0.3-0.0-0.30.4
Incentive salience index mean0.40.61.1-1.00.7-0.6-0.5
Condit. Reinf. lever presses0.61.01.5-1.20.9-1.1-0.5
Condit. Reinf. active minus inactive responses0.20.20.5-0.1-0.1-0.70.6
Condit. Reinf. active-inactive response ratio0.50.72.10.3-0.7-0.61.4
Condit. Reinf. active responses0.30.40.8-0.80.5-0.9-0.1
Condit. Reinf. inactive responses0.50.71.2-1.00.8-0.2-1.1
Condit. Reinf. lever presses2.73.96.3-2.02.0-2.5-1.1
Condit. Reinf. lever reinforcers received0.60.81.5-1.00.8-1.2-0.4
Conditioned reinforcement - actives0.20.62.20.00.1-1.50.6
Conditioned reinforcement - inactives1.33.57.11.8-1.80.12.7
Conditioned locomotion6.39.312.83.2-3.31.83.6
Patch foraging indifference point 0 sec0.00.00.1-0.0-0.30.10.0
Patch foraging indifference point AUC1.53.54.6-1.72.0-2.1-1.4
Delay disc. indifference point, 0s delay0.50.61.30.2-1.01.10.2
Delay disc. indifference point, 16s delay0.30.51.10.3-0.80.41.0
Delay disc. indifference point, 2s delay0.00.10.10.1-0.10.20.4
Delay disc. indifference point, 24s delay0.20.30.80.5-0.50.9-0.2
Delay disc. indifference point, 4s delay0.30.31.10.1-0.41.1-0.2
Delay disc. indifference point, 8s delay0.20.30.7-0.0-0.50.8-0.3
Indifference point function ln k4.112.516.63.5-3.74.12.7
Indifference point function log k4.112.516.63.5-3.74.12.7
Patch foraging total patch changes 0 sec0.00.10.10.2-0.20.4-0.2
Patch foraging total patch changes 12 sec4.96.57.4-2.72.7-2.3-2.4
Patch foraging total patch changes 18 sec0.51.11.4-1.21.0-1.1-0.8
Patch foraging total patch changes 24 sec0.72.53.2-1.31.6-1.5-1.8
Patch foraging total patch changes 6 sec1.11.82.4-1.31.5-0.9-1.6
Patch foraging time to switch 0 sec1.03.86.8-2.61.6-2.2-1.0
Patch foraging water rate 0 sec2.17.912.03.5-2.72.72.2
Patch foraging water rate 12 sec4.317.223.84.9-3.94.62.9
Patch foraging water rate 18 sec2.45.37.72.7-2.12.81.5
Patch foraging water rate 24 sec5.57.810.93.3-2.73.02.0
Patch foraging water rate 6 sec5.68.312.13.5-2.53.51.6
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.2-0.30.10.4
Distance traveled before self-admin0.61.32.4-1.30.9-1.5-0.4
Distance traveled after self-admin0.20.40.7-0.60.5-0.8-0.3
Extensor digitorum longus weight7.630.135.2-5.75.9-4.7-5.5
Bone: elastic displacement1.41.73.11.8-0.91.70.3
Bone: elastic work0.91.12.7-0.41.20.1-1.7
Bone: endosteal estimation0.41.02.00.4-1.40.61.3
Bone: endosteal perimeter0.61.43.20.4-1.50.11.8
Epididymis fat weight2.010.113.63.1-3.72.03.6
Delta time in closed arm before/after self-admin0.60.61.20.00.40.9-1.1
Delta time in open arm before/after self-admin0.60.72.2-0.60.3-1.50.3
Diff in mean of infusions in LGA sessions0.40.81.5-0.61.2-0.7-0.8
Delay discount exponential model param0.10.10.20.30.2-0.50.2
Extinction: sum of active levers before priming2.43.65.0-2.22.0-1.8-1.5
Active lever presses in extinction session 63.73.75.9-1.81.9-2.4-1.4
Bone: final force2.54.14.6-2.12.1-2.1-1.8
Bone: final moment2.33.84.2-2.02.1-1.9-1.7
Food consumed during 24 hour testing period0.10.10.50.20.2-0.70.1
Glucose2.03.14.61.2-2.11.71.9
Heart weight1.01.63.90.6-1.42.00.5
Delay discount hyperbolic model param0.10.10.20.30.2-0.40.1
Intermittent access intake day 1-15 change0.31.62.71.4-1.30.01.6
Intermittent access intake escalation0.31.42.41.3-1.2-0.21.6
Intermittent access intake escalation 20.81.32.11.2-1.2-0.11.5
Intermitt. access day 1 inactive lever presses0.00.20.30.4-0.50.10.6
Intermitt. access day 15 inactive lever presses0.31.84.71.1-1.2-0.12.2
Intermitt. access escalation Index1.13.64.41.8-2.02.11.7
Intermittent access day 1 total infusions0.72.14.60.8-1.70.42.1
Intermittent access day 15 total infusions2.25.411.02.2-2.40.43.3
Intermittent access terminal intake (last 3 days)2.54.39.51.7-2.20.03.1
Intermittent access total infusions2.42.86.71.3-1.70.12.6
Intermittent access day 1 locomotion0.91.63.30.9-1.50.51.8
Intermittent access day 15 total locomotion1.14.310.31.7-2.1-0.23.2
Intermittent access total locomotion4.95.913.41.8-2.60.13.7
Intermittent access standard deviation0.31.72.51.6-1.30.51.6
Left kidney weight0.32.54.41.2-2.10.91.9
Right kidney weight0.21.52.11.2-1.40.81.3
Cocaine induced anxiety0.10.10.5-0.30.1-0.70.1
Post-drug Anxiety0.70.81.1-1.00.8-1.1-0.7
Baseline Anxiety0.20.40.9-0.30.60.3-1.0
Tail length0.21.23.0-0.51.2-0.3-1.7
Length with tail1.56.610.8-2.12.9-1.6-3.3
Length without tail1.05.29.6-1.72.6-1.1-3.1
Times rat made contact with spout0.50.61.0-0.70.8-0.3-1.0
Lifetime Intake1.51.94.31.1-1.40.32.1
Liver weight, left1.11.82.81.5-1.31.70.8
Liver weight, right2.84.97.92.3-2.22.81.2
Locomotor activity2.64.16.92.5-1.62.61.0
Locomotor testing distance2.35.710.42.9-1.83.21.0
Locomotor testing rearing1.45.09.32.6-1.73.01.1
Locomotion in novel chamber4.45.97.82.5-2.81.52.7
Locomotion in novel chamber post-restriction1.13.35.21.8-1.91.02.3
Fecal boli incidents, locomotor time 10.20.41.1-0.30.2-1.00.6
Change in fecal boli incidents, locomotor task0.30.30.90.1-0.20.9-0.6
Time >=10cm from walls, locomotor time 10.60.71.9-0.1-0.9-0.51.4
Bouts of movement, locomotor time 11.31.62.4-1.31.2-1.6-1.0
Total resting periods, locomotor time 11.11.32.2-1.21.0-1.5-0.7
Rest time, locomotor task time 11.01.62.11.4-1.30.81.4
Distance moved, locomotor task time 10.10.20.6-0.80.4-0.4-0.4
Vertical activity count, locomotor time 10.11.01.11.0-1.11.01.0
Time >=10cm from walls, locomotor time 20.10.30.9-0.5-0.1-1.00.3
Bouts of movement, locomotor time 20.20.60.9-0.90.7-0.8-0.7
Total resting periods, locomotor time 20.10.30.6-0.70.4-0.7-0.4
Rest time, locomotor task time 21.62.63.81.6-1.91.31.6
Distance moved, locomotor task time 21.01.31.6-1.01.2-1.0-1.2
Vertical activity count, locomotor time 20.10.30.60.8-0.00.6-0.3
Light reinforcement 10.00.20.50.6-0.20.70.1
Light reinforcement 20.41.02.40.8-0.9-0.11.5
Bone: marrow area0.51.12.20.4-1.50.71.3
Bone: maximum diameter0.30.62.0-0.60.5-1.4-0.1
Bone: maximum force3.67.09.2-3.02.7-2.8-2.0
Bone: maximum moment3.46.38.3-2.92.5-2.7-1.9
Mean time between licks in bursts0.10.71.7-0.00.60.8-1.3
Mean num. licks in bursts0.10.40.90.6-0.60.90.1
Cd content in liver1.11.22.70.9-1.1-0.11.7
Co content in liver2.22.64.42.0-1.42.10.6
Cu content in liver0.10.10.2-0.40.1-0.20.2
Fe content in liver0.10.10.2-0.00.5-0.1-0.4
K content in liver0.50.50.8-0.90.7-0.2-0.9
Mg content in liver0.40.41.00.4-0.61.00.3
Mn content in liver3.74.25.6-2.02.2-2.4-1.5
Na content in liver0.30.30.4-0.20.7-0.5-0.6
Rb content in liver2.02.33.41.4-1.51.81.2
Se content in liver0.20.30.70.2-0.2-0.60.9
Sr content in liver2.42.12.5-1.11.6-1.5-1.6
Zn content in liver0.20.30.4-0.70.5-0.3-0.6
Bone: minimum diameter0.40.71.7-0.1-1.10.21.3
Time in familiar zone, hab. session 10.10.10.20.2-0.30.30.5
Time in novel zone, hab. session 10.60.71.31.0-0.61.1-0.1
Total zone transitions, hab. session 10.91.21.6-1.31.1-1.1-0.9
Total locomotion distance, hab. session 10.20.30.60.1-0.70.40.6
Locomotion velocity, hab. session 10.00.00.1-0.3-0.2-0.00.2
Time in familiar zone, hab. session 20.40.40.90.6-0.01.0-0.5
Time in novel zone, hab. session 20.20.20.5-0.70.2-0.60.1
Total zone transitions, hab. session 21.72.24.2-2.11.3-1.0-1.4
Total locomotion distance, hab. session 20.10.10.4-0.6-0.20.3-0.2
Locomotion velocity, hab. session 20.10.10.3-0.5-0.40.20.2
Novel to familiar place preference ratio1.41.83.7-1.51.1-1.9-0.3
Novelty place preference0.81.02.2-1.10.7-1.50.0
Time in novel zone, NPP test0.60.71.5-0.90.6-1.2-0.0
Total zone transitions, NPP test2.43.65.0-2.21.8-1.7-1.8
Total locomotion distance, NPP test0.10.20.5-0.70.1-0.0-0.4
Locomotion velocity, NPP test0.20.20.7-0.80.3-0.2-0.3
Intraocular pressure1.22.03.61.5-1.5-0.11.9
Delta distance traveled before/after self-admin0.50.51.30.8-0.31.2-0.1
Delta ambulatory time before/after self-admin0.20.41.00.6-0.11.0-0.4
Parametrial fat weight3.37.811.52.2-3.41.93.3
Pavlov. Cond. lever latency0.30.40.70.9-0.60.50.5
Pavlov. Cond. magazine entry latency0.50.61.5-1.20.4-0.9-0.1
Pavlov. Cond. change in total contacts0.60.71.5-1.00.3-1.20.4
Pavlov. Cond. index score0.30.40.7-0.80.5-0.8-0.1
Pavlov. Cond. latency score0.20.20.5-0.70.3-0.4-0.1
Pavlov. Cond. lever contacts0.10.10.4-0.60.3-0.1-0.3
Pavlov. Cond. magazine entry number0.40.61.20.8-0.61.10.1
Pavlov. Cond. intertrial magazine entries0.40.51.20.8-0.4-0.11.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.2-1.10.6-1.0-0.2
Pavlov. Cond. response bias0.30.40.7-0.70.5-0.9-0.0
Pavlov. Cond. lever latency0.91.22.61.0-1.01.60.3
Pavlov. Cond. magazine entry latency4.66.58.1-2.82.7-2.6-2.0
Pavlov. Cond. change in total contacts1.74.28.5-2.21.8-2.9-0.5
Pavlov. Cond. index score3.04.77.2-2.42.2-2.7-1.1
Pavlov. Cond. latency score2.64.16.7-2.22.0-2.6-1.0
Pavlov. Cond. lever contacts0.81.22.6-1.01.1-1.6-0.3
Pavlov. Cond. magazine entry number8.110.512.53.5-3.43.52.4
Pavlov. Cond. intertrial magazine entries0.71.61.91.3-1.41.01.3
Pavlov. Cond. lever-magazine prob. diff.3.65.58.0-2.62.4-2.8-1.3
Pavlov. Cond. response bias2.73.75.4-2.11.9-2.3-1.1
Time in closed arm before self-admin0.20.41.00.1-0.8-0.41.0
Time in closed arm after self-admin0.30.30.60.5-0.60.80.3
Time in open arm before self-admin1.21.54.70.9-0.22.2-0.7
Time in open arm after self-admin0.10.10.30.00.20.3-0.5
Bone: periosteal estimation0.10.20.6-0.5-0.0-0.80.3
Bone: periosteal perimeter0.30.51.1-0.80.4-1.0-0.1
Bone: post-yield work2.03.47.6-2.80.9-2.3-0.0
Progressive ratio test 1 active lever presses0.20.30.70.3-0.2-0.50.9
Progressive ratio test 1 breakpoint0.20.30.70.2-0.1-0.70.8
Progressive ratio test 1 inactive lever presses0.10.10.30.2-0.1-0.40.6
Progressive ratio test 2 active lever presses1.52.25.11.3-1.4-0.22.3
Progressive ratio test 2 breakpoint1.72.25.11.3-1.3-0.22.3
Progressive ratio test 2 inactive lever presses2.68.315.32.7-3.11.03.9
Incentive Sensitization - Responses0.10.20.6-0.40.1-0.80.4
Incentive Sensitization - Breakpoint0.10.20.4-0.2-0.1-0.60.6
Sum of active levers in priming session hrs 5-62.22.15.7-0.51.5-2.4-0.1
Progressive ratio0.72.04.3-2.10.9-1.6-0.7
Food seeking constrained by brief footshock0.10.10.2-0.10.40.0-0.4
Seeking ratio, punishment vs. effort1.32.95.32.2-1.12.30.6
Retroperitoneal fat weight9.040.446.86.3-6.85.96.3
Reaction time number correct0.10.20.4-0.10.6-0.1-0.6
Reaction time mean minus median0.95.68.8-2.62.1-3.0-1.7
Reaction time mean minus median AUC0.42.64.0-1.61.5-2.0-1.3
Reaction time num false alarms0.61.03.01.0-0.41.7-0.0
Reaction time num false alarms AUC0.20.51.40.30.21.2-0.6
Reaction time trials correct on left0.10.20.4-0.10.6-0.1-0.6
Reaction time trials on left0.10.30.5-0.20.7-0.2-0.7
Reaction time mean0.20.41.2-0.5-0.1-1.10.3
Reaction time mean AUC0.20.41.2-0.6-0.1-1.10.4
Median of all reaction times0.20.30.70.0-0.6-0.40.8
Reaction time omissions1.62.63.3-1.81.6-1.8-1.3
Reaction time false alarm rate0.40.61.80.6-0.41.30.0
Reaction time premature initiation rate2.03.17.5-1.31.8-0.2-2.7
Reaction time premature initiations1.54.69.9-1.52.4-0.6-3.1
Std. dev. reaction times0.51.73.3-1.40.9-1.8-0.7
Reaction time trials completed0.10.30.5-0.20.7-0.2-0.7
Reaction time trials AUC0.00.20.4-0.00.50.1-0.6
Run reversals in cocaine runway, females0.60.61.1-0.90.40.7-1.1
Run reversals in cocaine runway, males0.60.61.71.3-0.50.70.5
Latency to leave start box in cocaine runway0.10.10.2-0.4-0.1-0.30.4
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.0-0.30.2
Latency to leave start box in cocaine runway, M0.10.10.1-0.30.2-0.30.0
Std. dev. time between licks in bursts0.40.71.90.7-0.21.4-0.6
Total sessions with >9 infusions0.10.20.3-0.50.2-0.50.1
Short access day 1 total inactive lever presses1.22.52.81.5-1.61.51.7
Short access day 10 total inactive lever presses0.10.71.40.8-0.71.20.6
Short access day 1 total infusions0.61.22.00.8-1.20.81.4
Short access day 10 total infusions0.20.40.9-0.5-0.2-0.60.9
Short access total infusions0.10.20.50.0-0.30.00.7
Short access day 1 locomotion0.71.12.30.9-1.00.51.5
Short access day 10 total locomotion0.20.82.00.4-0.9-0.11.4
Short access total locomotion0.60.92.40.7-1.00.11.5
One hour access (0.3 mA shock)5.76.89.62.7-2.81.63.1
Compulsive drug intake1.21.84.7-0.61.30.7-2.2
One hour access (shock baseline)2.87.313.92.5-2.90.83.7
Social response proportion0.60.71.2-0.90.8-1.1-0.5
Social responses0.10.20.4-0.20.6-0.3-0.5
Social time0.20.30.6-0.20.6-0.1-0.8
Soleus weight4.212.414.83.6-3.93.23.4
Bone: stiffness2.85.17.0-2.72.1-2.6-1.4
Tibialis anterior weight9.432.440.5-5.36.4-5.3-5.7
Time to tail flick, vehicle, before self-admin0.20.30.5-0.70.3-0.7-0.3
Time to tail flick, vehicle, after self-admin0.40.71.6-1.30.5-0.2-1.0
Time to tail flick, test, before self-admin1.41.62.30.9-1.41.51.2
Time to tail flick, test, after self-admin0.10.10.3-0.10.0-0.60.0
Delta time to tail flick, vehicle, before/after SA0.40.40.7-0.70.50.0-0.8
Delta time to tail flick, test, before/after SA1.11.32.7-0.51.2-1.6-1.0
Tibia length1.54.210.3-1.71.9-3.2-0.5
Ambulatory time before self-admin0.41.33.0-1.20.7-1.7-0.0
Ambulatory time after self-admin0.10.20.6-0.1-0.5-0.30.8
Bone: tissue strength0.00.00.1-0.20.1-0.3-0.0
Total heroin consumption5.56.57.7-2.62.8-2.3-2.4
Bone: trabecular number1.12.13.3-1.81.3-1.8-0.7
Bone: trabecular spacing0.71.02.21.1-0.81.50.3
Bone: trabecular thickness0.10.20.50.1-0.50.20.7
Bone: trabecular tissue density3.56.27.62.6-2.61.82.8
Water consumed over 24 hours0.61.21.8-0.91.3-0.8-1.3
Number of responses in last shaping day0.10.10.40.4-0.10.6-0.1