Rbm4b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr1_211478477_211483463 0.04 0.03 3.8e-03 0 0.01 0.01 0 2.7e-01 2.5e-02 7.8e-03 1.5e-01
2 Liver intron excision ratio chr1_211484133_211486827 0.04 0.03 3.8e-03 0 0.01 0.03 0.01 9.7e-02 1.3e-02 7.2e-04 7.1e-02
3 LHb mRNA stability Rbm4b 0.29 0.17 1.5e-03 0.1 0.16 0.07 0.11 2.5e-03 1.3e-04 1.0e-02 1.2e-03
4 LHb gene expression Rbm4b 0.38 0.18 1.1e-04 0.18 0.17 0.19 0.18 5.6e-05 8.8e-05 3.3e-05 3.7e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.95.07.31.8-1.6-2.7-2.7
Area under the delay curve0.80.91.50.8-0.9-0.9-1.2
BMI with tail4.515.619.43.7-3.6-4.4-4.1
BMI without tail2.26.67.82.3-2.5-2.7-2.8
Body weight2.410.513.33.5-3.7-2.8-2.8
Weight adjusted by age0.40.50.90.9-1.0-0.4-0.4
Bone surface5.29.511.03.2-3.0-3.3-2.8
Bone volume3.15.67.32.3-2.1-2.7-2.3
Breakpoint value in progressive ratio session1.51.72.11.4-1.4-1.2-1.2
Number of licking bursts0.30.50.80.9-0.8-0.6-0.5
Context. condit. distance diff. score1.21.52.7-1.61.60.70.4
Locomotion velocity, session 10.50.51.20.3-0.50.71.1
Locomotion distance, session 12.43.03.21.8-1.8-1.6-1.8
Locomotion velocity, session 22.12.44.01.9-2.0-1.1-0.8
Locomotion distance, session 22.02.73.91.8-2.0-1.3-1.4
Locomotion velocity, session 30.30.30.40.6-0.7-0.6-0.3
Locomotion distance, session 30.10.20.30.4-0.5-0.00.4
Stereotopy head waving bouts, day 30.00.00.1-0.10.0-0.3-0.2
Stereotopy head waving duration, day 30.20.20.3-0.50.6-0.3-0.3
Locomotion velocity, session 70.20.20.7-0.10.1-0.8-0.5
Locomotion distance, session 70.10.10.20.2-0.3-0.5-0.5
Stereotopy head waving bouts, day 70.30.31.00.4-0.2-1.0-0.3
Stereotopy head waving duration, day 71.21.52.91.1-0.9-1.7-1.0
Locomotion velocity, session 80.50.61.31.0-1.1-0.1-0.2
Locomotion distance, session 80.00.10.2-0.20.2-0.1-0.4
Degree of sensitization distance0.30.30.60.2-0.3-0.7-0.8
Degree of sensitization stereotypy0.40.41.00.6-0.5-1.0-0.2
Conditioned locomotion0.30.30.80.7-0.9-0.0-0.1
Cocaine response after cond. corrected0.80.91.4-1.21.10.80.6
Cocaine response after cond. not corrected0.30.40.6-0.80.70.50.3
Cocaine response before conditioning0.70.81.31.2-1.0-0.8-0.6
Saline control response2.73.55.12.2-2.3-1.4-1.5
Bone: connectivity density5.07.99.92.5-2.4-3.1-3.1
Bone: cortical apparent density0.10.10.3-0.10.10.50.5
Bone: cortical area0.10.10.30.5-0.4-0.0-0.1
Bone: cortical porosity0.91.01.70.8-0.7-1.0-1.3
Bone: cortical porosity0.91.01.70.8-0.8-1.0-1.3
Bone: cortical thickness0.50.81.21.0-1.10.60.7
Bone: cortical thickness0.50.60.70.6-0.80.70.8
Bone: cortical tissue density0.10.10.3-0.0-0.00.50.5
Condit. Reinf. active minus inactive responses0.91.01.51.2-1.2-0.9-0.6
Condit. Reinf. active-inactive response ratio0.30.40.60.8-0.6-0.6-0.4
Condit. Reinf. active responses0.50.60.80.9-0.8-0.6-0.7
Condit. Reinf. inactive responses0.00.00.10.1-0.1-0.2-0.3
Incentive salience index mean0.91.11.21.1-1.0-1.0-1.0
Condit. Reinf. lever presses0.20.30.50.5-0.4-0.5-0.7
Condit. Reinf. active minus inactive responses0.30.30.70.4-0.3-0.8-0.6
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.4-0.2-0.0
Condit. Reinf. active responses1.31.92.91.2-1.1-1.7-1.4
Condit. Reinf. inactive responses1.92.43.21.3-1.4-1.8-1.7
Condit. Reinf. lever presses1.82.53.21.8-1.7-1.7-1.1
Condit. Reinf. lever reinforcers received1.52.02.91.3-1.2-1.7-1.4
Conditioned reinforcement - actives0.10.20.3-0.30.40.50.5
Conditioned reinforcement - inactives0.91.42.1-1.21.50.81.1
Conditioned locomotion4.15.47.6-2.62.82.01.7
Patch foraging indifference point 0 sec0.10.20.40.3-0.2-0.4-0.7
Patch foraging indifference point AUC0.20.30.50.7-0.7-0.40.3
Delay disc. indifference point, 0s delay0.40.51.50.0-0.1-0.6-1.2
Delay disc. indifference point, 16s delay0.10.10.20.2-0.1-0.5-0.4
Delay disc. indifference point, 2s delay0.10.10.30.1-0.1-0.4-0.5
Delay disc. indifference point, 24s delay0.10.10.2-0.20.00.50.1
Delay disc. indifference point, 4s delay0.50.61.60.3-0.4-0.6-1.3
Delay disc. indifference point, 8s delay0.40.50.90.5-0.6-0.6-1.0
Indifference point function ln k2.44.15.6-2.42.22.11.2
Indifference point function log k2.44.15.6-2.42.22.11.2
Patch foraging total patch changes 0 sec0.00.00.00.2-0.20.1-0.2
Patch foraging total patch changes 12 sec1.72.32.51.6-1.6-1.6-1.2
Patch foraging total patch changes 18 sec0.50.71.00.9-0.9-1.0-0.6
Patch foraging total patch changes 24 sec0.40.61.21.1-1.1-0.3-0.2
Patch foraging total patch changes 6 sec1.11.72.21.5-1.5-1.3-0.8
Patch foraging time to switch 0 sec3.06.17.92.2-2.0-2.8-2.8
Patch foraging water rate 0 sec4.18.610.4-2.92.93.22.7
Patch foraging water rate 12 sec5.411.313.8-3.63.43.72.7
Patch foraging water rate 18 sec1.72.63.4-1.71.61.81.2
Patch foraging water rate 24 sec5.57.78.8-3.02.82.92.4
Patch foraging water rate 6 sec3.65.28.9-2.11.93.01.9
Seeking ratio, delayed vs. immediate footshock1.21.43.00.9-0.8-1.1-1.7
Distance traveled before self-admin0.50.71.00.8-0.7-1.0-0.6
Distance traveled after self-admin0.20.30.40.6-0.6-0.40.5
Extensor digitorum longus weight2.810.819.34.2-4.4-2.1-1.5
Bone: elastic displacement2.12.44.2-1.21.02.01.8
Bone: elastic work0.40.50.70.4-0.60.80.9
Bone: endosteal estimation0.30.61.3-0.20.3-0.9-1.1
Bone: endosteal perimeter0.30.61.60.20.1-1.3-0.9
Epididymis fat weight2.17.112.3-3.23.51.81.6
Delta time in closed arm before/after self-admin0.10.10.10.1-0.30.1-0.3
Delta time in open arm before/after self-admin0.20.20.7-0.00.2-0.10.8
Diff in mean of infusions in LGA sessions0.00.00.0-0.00.1-0.2-0.2
Delay discount exponential model param0.70.81.3-0.80.90.81.1
Extinction: sum of active levers before priming2.32.53.91.3-1.2-1.7-2.0
Active lever presses in extinction session 60.90.91.71.3-1.2-0.70.0
Bone: final force1.01.72.71.6-1.6-1.0-0.7
Bone: final moment1.11.72.71.6-1.6-1.0-0.8
Food consumed during 24 hour testing period0.30.50.8-0.50.60.60.9
Glucose0.20.30.7-0.20.3-0.8-0.7
Heart weight0.91.43.5-0.10.1-1.4-1.9
Delay discount hyperbolic model param0.70.81.3-0.70.80.81.1
Intermittent access intake day 1-15 change0.91.82.4-1.41.51.11.2
Intermittent access intake escalation0.91.82.1-1.31.41.21.4
Intermittent access intake escalation 22.02.33.0-1.41.51.31.7
Intermitt. access day 1 inactive lever presses0.10.20.8-0.20.30.20.9
Intermitt. access day 15 inactive lever presses0.10.30.8-0.30.5-0.00.9
Intermitt. access escalation Index0.91.32.4-1.61.50.60.0
Intermittent access day 1 total infusions0.71.12.1-0.20.4-1.5-1.4
Intermittent access day 15 total infusions1.11.63.3-1.61.80.30.5
Intermittent access terminal intake (last 3 days)0.70.92.0-1.21.4-0.20.4
Intermittent access total infusions0.40.50.7-0.50.7-0.8-0.6
Intermittent access day 1 locomotion0.30.41.20.00.1-1.1-0.8
Intermittent access day 15 total locomotion0.40.81.9-1.11.4-0.10.1
Intermittent access total locomotion0.60.81.7-1.01.3-0.5-0.3
Intermittent access standard deviation0.61.21.6-1.01.10.91.2
Left kidney weight0.62.74.7-2.22.21.10.3
Right kidney weight0.62.64.0-1.92.01.50.6
Cocaine induced anxiety0.10.10.10.4-0.3-0.10.4
Post-drug Anxiety0.20.20.40.6-0.5-0.30.2
Baseline Anxiety0.00.00.1-0.1-0.00.20.0
Tail length0.10.40.90.3-0.60.90.5
Length with tail0.31.33.11.5-1.80.2-0.0
Length without tail0.51.53.61.6-1.9-0.00.1
Times rat made contact with spout0.91.11.31.0-1.1-0.9-1.1
Lifetime Intake0.40.50.8-0.50.6-0.9-0.9
Liver weight, left1.11.82.2-1.51.31.41.1
Liver weight, right0.71.31.8-1.31.11.20.7
Locomotor activity1.21.93.6-1.20.91.91.3
Locomotor testing distance1.32.34.5-1.20.92.11.5
Locomotor testing rearing0.30.60.9-0.80.70.90.8
Locomotion in novel chamber2.02.53.9-1.92.01.31.1
Locomotion in novel chamber post-restriction1.11.82.8-1.61.70.91.0
Fecal boli incidents, locomotor time 10.40.51.7-0.40.50.21.3
Change in fecal boli incidents, locomotor task0.90.82.40.6-0.7-0.5-1.5
Time >=10cm from walls, locomotor time 10.70.71.60.5-0.3-1.2-1.0
Bouts of movement, locomotor time 10.40.40.70.9-0.8-0.5-0.2
Total resting periods, locomotor time 10.30.40.60.8-0.7-0.5-0.2
Rest time, locomotor task time 11.01.21.8-0.90.91.21.3
Distance moved, locomotor task time 11.01.52.20.9-0.9-1.4-1.5
Vertical activity count, locomotor time 10.20.40.8-0.90.90.3-0.1
Time >=10cm from walls, locomotor time 20.00.00.10.2-0.1-0.10.1
Bouts of movement, locomotor time 20.20.30.50.6-0.6-0.7-0.1
Total resting periods, locomotor time 20.10.20.50.4-0.4-0.7-0.0
Rest time, locomotor task time 21.01.31.6-1.31.20.91.1
Distance moved, locomotor task time 20.60.70.90.9-0.9-0.4-0.9
Vertical activity count, locomotor time 20.50.71.7-0.80.71.30.5
Light reinforcement 10.00.10.1-0.20.10.3-0.3
Light reinforcement 20.40.71.0-0.81.00.70.8
Bone: marrow area0.30.61.3-0.20.4-0.9-1.2
Bone: maximum diameter0.00.00.00.10.1-0.1-0.0
Bone: maximum force2.95.27.42.7-2.5-2.2-1.5
Bone: maximum moment2.95.07.02.6-2.5-2.1-1.6
Mean time between licks in bursts0.10.20.40.5-0.70.0-0.4
Mean num. licks in bursts0.10.10.2-0.50.30.0-0.2
Cd content in liver0.50.51.2-0.91.10.30.1
Co content in liver3.13.55.6-1.51.12.42.3
Cu content in liver0.20.30.50.4-0.4-0.6-0.7
Fe content in liver0.10.10.4-0.0-0.10.40.6
K content in liver1.11.01.31.1-1.2-0.9-0.8
Mg content in liver0.10.10.20.3-0.4-0.4-0.0
Mn content in liver1.41.62.81.7-1.5-1.2-0.1
Na content in liver0.30.30.70.00.00.80.7
Rb content in liver0.10.10.2-0.40.2-0.10.3
Se content in liver0.10.10.2-0.20.4-0.3-0.0
Sr content in liver0.10.10.20.4-0.40.10.0
Zn content in liver0.10.20.40.2-0.2-0.3-0.6
Bone: minimum diameter0.71.22.50.5-0.3-1.6-1.4
Time in familiar zone, hab. session 10.20.20.20.5-0.4-0.5-0.2
Time in novel zone, hab. session 10.60.60.9-0.90.80.90.5
Total zone transitions, hab. session 10.91.31.71.3-1.3-0.9-1.0
Total locomotion distance, hab. session 10.00.00.0-0.10.1-0.0-0.2
Locomotion velocity, hab. session 10.10.10.10.2-0.2-0.2-0.4
Time in familiar zone, hab. session 20.30.30.7-0.1-0.20.60.9
Time in novel zone, hab. session 20.70.71.50.5-0.3-0.9-1.2
Total zone transitions, hab. session 26.27.98.92.7-2.7-3.0-2.9
Total locomotion distance, hab. session 21.62.12.51.3-1.4-1.6-1.6
Locomotion velocity, hab. session 21.31.82.31.1-1.1-1.5-1.5
Novel to familiar place preference ratio0.50.51.10.7-0.4-1.0-0.6
Novelty place preference0.30.30.90.4-0.1-0.9-0.6
Time in novel zone, NPP test0.30.30.80.4-0.1-0.9-0.6
Total zone transitions, NPP test2.94.35.62.3-2.4-1.7-1.8
Total locomotion distance, NPP test0.60.81.00.9-1.0-0.6-0.9
Locomotion velocity, NPP test0.50.71.00.9-1.0-0.6-0.9
Intraocular pressure2.12.93.6-1.71.81.41.9
Delta distance traveled before/after self-admin0.40.40.8-0.50.40.70.9
Delta ambulatory time before/after self-admin0.20.30.6-0.30.20.60.8
Parametrial fat weight1.63.66.8-2.52.60.80.9
Pavlov. Cond. lever latency0.10.20.2-0.40.50.40.1
Pavlov. Cond. magazine entry latency1.01.31.61.1-1.0-1.3-1.2
Pavlov. Cond. change in total contacts0.20.20.50.4-0.1-0.7-0.5
Pavlov. Cond. index score0.10.10.20.4-0.3-0.3-0.1
Pavlov. Cond. latency score0.10.10.10.4-0.3-0.4-0.1
Pavlov. Cond. lever contacts0.10.10.10.3-0.3-0.4-0.2
Pavlov. Cond. magazine entry number0.10.10.3-0.50.40.2-0.0
Pavlov. Cond. intertrial magazine entries0.60.71.0-1.01.00.70.5
Pavlov. Cond. lever-magazine prob. diff.0.20.30.40.6-0.5-0.5-0.5
Pavlov. Cond. response bias0.10.10.20.4-0.3-0.1-0.1
Pavlov. Cond. lever latency0.10.10.3-0.50.50.3-0.1
Pavlov. Cond. magazine entry latency4.85.87.82.8-2.7-2.3-1.7
Pavlov. Cond. change in total contacts1.32.22.81.7-1.5-1.7-1.0
Pavlov. Cond. index score2.02.73.92.0-1.8-1.6-1.1
Pavlov. Cond. latency score1.72.23.31.8-1.7-1.4-0.9
Pavlov. Cond. lever contacts0.20.20.40.6-0.5-0.5-0.1
Pavlov. Cond. magazine entry number5.97.310.0-3.23.12.51.9
Pavlov. Cond. intertrial magazine entries0.50.81.2-1.11.10.80.5
Pavlov. Cond. lever-magazine prob. diff.2.53.34.72.2-2.0-1.8-1.2
Pavlov. Cond. response bias1.62.12.91.7-1.6-1.5-0.9
Time in closed arm before self-admin0.10.10.20.4-0.2-0.4-0.0
Time in closed arm after self-admin0.00.00.00.1-0.20.00.1
Time in open arm before self-admin0.20.20.6-0.50.20.8-0.3
Time in open arm after self-admin0.10.10.2-0.30.20.20.5
Bone: periosteal estimation0.10.10.30.10.0-0.5-0.5
Bone: periosteal perimeter0.40.71.10.9-0.6-1.0-0.7
Bone: post-yield work6.69.715.62.3-1.8-3.9-3.8
Progressive ratio test 1 active lever presses0.10.10.3-0.10.2-0.5-0.5
Progressive ratio test 1 breakpoint0.10.10.3-0.10.1-0.5-0.5
Progressive ratio test 1 inactive lever presses0.00.00.1-0.00.1-0.3-0.1
Progressive ratio test 2 active lever presses0.30.30.8-0.70.9-0.20.0
Progressive ratio test 2 breakpoint0.30.30.8-0.70.9-0.10.1
Progressive ratio test 2 inactive lever presses1.42.24.7-1.92.20.50.5
Incentive Sensitization - Responses0.40.61.10.7-0.5-1.0-0.8
Incentive Sensitization - Breakpoint0.30.40.80.5-0.4-0.9-0.6
Sum of active levers in priming session hrs 5-61.00.92.2-0.20.41.21.5
Progressive ratio3.35.28.01.7-1.7-2.7-2.8
Food seeking constrained by brief footshock0.10.20.30.5-0.6-0.1-0.2
Seeking ratio, punishment vs. effort2.23.15.1-1.41.32.32.0
Retroperitoneal fat weight3.916.727.4-5.15.22.92.3
Reaction time number correct0.10.30.6-0.0-0.00.70.7
Reaction time mean minus median1.02.64.02.0-1.8-1.4-1.1
Reaction time mean minus median AUC0.30.81.61.3-1.1-0.4-0.3
Reaction time num false alarms0.60.91.7-0.70.41.31.1
Reaction time num false alarms AUC0.20.30.70.1-0.30.80.7
Reaction time trials correct on left0.10.30.6-0.0-0.00.70.7
Reaction time trials on left0.10.30.6-0.0-0.10.80.7
Reaction time mean0.10.10.20.4-0.3-0.4-0.5
Reaction time mean AUC0.10.20.30.4-0.2-0.4-0.6
Median of all reaction times0.00.00.10.00.1-0.2-0.3
Reaction time omissions0.60.81.41.2-1.1-0.7-0.2
Reaction time false alarm rate0.10.20.4-0.2-0.00.60.5
Reaction time premature initiation rate1.21.63.31.6-1.8-0.5-0.7
Reaction time premature initiations0.91.53.41.6-1.9-0.0-0.2
Std. dev. reaction times0.50.91.41.2-1.0-0.8-0.7
Reaction time trials completed0.10.30.6-0.0-0.10.80.7
Reaction time trials AUC0.10.30.6-0.0-0.10.80.7
Run reversals in cocaine runway, females1.51.51.81.2-1.2-1.1-1.3
Run reversals in cocaine runway, males2.92.95.8-1.00.92.02.4
Latency to leave start box in cocaine runway0.50.51.20.7-0.5-1.1-0.4
Latency to leave start box in cocaine runway, F0.30.30.70.4-0.4-0.8-0.5
Latency to leave start box in cocaine runway, M0.30.30.50.7-0.6-0.50.1
Std. dev. time between licks in bursts0.30.31.1-0.40.11.00.4
Total sessions with >9 infusions1.21.43.10.6-0.6-1.4-1.8
Short access day 1 total inactive lever presses0.91.22.2-1.51.50.60.4
Short access day 10 total inactive lever presses0.10.31.0-0.20.20.31.0
Short access day 1 total infusions0.30.40.5-0.70.7-0.6-0.6
Short access day 10 total infusions2.33.05.40.8-0.7-2.3-2.3
Short access total infusions1.01.33.00.3-0.2-1.4-1.7
Short access day 1 locomotion0.10.10.4-0.10.1-0.7-0.3
Short access day 10 total locomotion0.10.30.70.20.0-0.8-0.6
Short access total locomotion0.20.20.6-0.00.1-0.8-0.6
One hour access (0.3 mA shock)1.21.42.5-1.41.60.60.7
Compulsive drug intake0.40.51.10.6-1.00.60.4
One hour access (shock baseline)1.32.04.3-1.72.10.40.7
Social response proportion1.31.42.11.5-1.3-1.1-0.9
Social responses0.20.20.40.6-0.6-0.2-0.1
Social time0.10.10.20.4-0.40.0-0.4
Soleus weight2.88.111.2-3.33.32.61.9
Bone: stiffness2.54.15.42.1-1.9-2.3-1.7
Tibialis anterior weight2.17.114.93.6-3.9-0.8-0.3
Time to tail flick, vehicle, before self-admin0.60.60.90.9-0.9-0.8-0.5
Time to tail flick, vehicle, after self-admin1.92.64.31.2-1.2-1.7-2.1
Time to tail flick, test, before self-admin0.40.41.00.0-0.0-0.8-1.0
Time to tail flick, test, after self-admin0.00.00.00.10.0-0.10.2
Delta time to tail flick, vehicle, before/after SA1.21.11.51.0-0.9-1.1-1.2
Delta time to tail flick, test, before/after SA1.01.12.3-0.40.41.31.5
Tibia length0.00.00.10.2-0.10.2-0.3
Ambulatory time before self-admin0.50.81.41.0-0.8-1.2-0.5
Ambulatory time after self-admin0.10.10.40.3-0.2-0.70.2
Bone: tissue strength0.20.20.30.3-0.2-0.5-0.6
Total heroin consumption1.41.62.01.4-1.4-1.1-1.1
Bone: trabecular number2.94.87.11.7-1.5-2.7-2.6
Bone: trabecular spacing0.50.71.2-0.80.61.10.8
Bone: trabecular thickness0.70.91.80.2-0.1-1.3-1.3
Bone: trabecular tissue density3.75.46.3-2.42.52.32.1
Water consumed over 24 hours0.70.91.21.1-1.1-0.7-0.7
Number of responses in last shaping day0.20.20.7-0.20.10.30.8