Rassf9

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Rassf9 0.07 0.05 3.1e-05 0.03 0.03 0.01 0.02 3.6e-04 1.7e-04 1.1e-02 1.0e-03
2 Adipose gene expression Rassf9 0.19 0.08 0.0e+00 0.2 0.22 0.18 0.19 5.9e-22 1.0e-23 5.7e-20 7.7e-21
3 Eye gene expression Rassf9 0.76 0.11 2.3e-03 0.04 0.01 -0.02 0 8.4e-02 2.5e-01 8.2e-01 2.8e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.60.92.30.70.1-1.5
Area under the delay curve1.51.62.8-1.7-1.4-0.1
BMI with tail2.58.213.33.63.21.0
BMI without tail2.45.08.42.92.50.2
Body weight1.98.210.53.23.21.9
Weight adjusted by age0.70.81.41.21.00.1
Bone surface0.20.30.60.60.2-0.8
Bone volume0.40.61.40.70.2-1.2
Breakpoint value in progressive ratio session0.50.50.7-0.9-0.30.8
Number of licking bursts0.70.81.4-1.2-1.00.2
Context. condit. distance diff. score1.01.22.0-0.6-1.1-1.4
Locomotion velocity, session 10.00.00.10.10.20.3
Locomotion distance, session 10.70.91.20.70.91.1
Locomotion velocity, session 20.91.11.81.41.20.1
Locomotion distance, session 21.31.92.31.31.51.2
Locomotion velocity, session 31.31.51.9-1.4-1.4-0.8
Locomotion distance, session 33.53.85.7-2.4-2.3-0.7
Stereotopy head waving bouts, day 30.70.81.1-1.0-1.0-0.5
Stereotopy head waving duration, day 30.10.20.20.50.3-0.4
Locomotion velocity, session 70.40.41.10.1-0.3-1.0
Locomotion distance, session 70.20.20.4-0.7-0.50.3
Stereotopy head waving bouts, day 70.50.51.2-0.2-0.5-1.1
Stereotopy head waving duration, day 72.53.05.4-1.0-1.6-2.3
Locomotion velocity, session 80.30.40.70.60.2-0.9
Locomotion distance, session 80.50.71.5-0.2-0.7-1.2
Degree of sensitization distance1.21.21.51.21.20.8
Degree of sensitization stereotypy0.10.10.40.2-0.0-0.6
Conditioned locomotion0.30.40.60.80.5-0.5
Cocaine response after cond. corrected0.10.10.1-0.2-0.10.4
Cocaine response after cond. not corrected0.30.30.6-0.8-0.60.2
Cocaine response before conditioning0.50.61.2-1.1-0.70.3
Saline control response0.71.01.21.01.10.8
Bone: connectivity density0.40.61.6-0.1-0.3-1.3
Bone: cortical apparent density1.51.93.0-1.7-1.6-0.4
Bone: cortical area0.00.00.0-0.1-0.1-0.1
Bone: cortical porosity1.31.41.91.11.41.0
Bone: cortical porosity1.82.02.61.31.61.3
Bone: cortical thickness0.50.81.2-1.0-1.1-0.5
Bone: cortical thickness0.50.61.0-1.0-0.80.3
Bone: cortical tissue density1.41.92.8-1.7-1.6-0.5
Condit. Reinf. active minus inactive responses0.30.30.60.80.6-0.1
Condit. Reinf. active-inactive response ratio0.80.81.61.30.9-0.0
Condit. Reinf. active responses0.20.30.70.40.0-0.8
Condit. Reinf. inactive responses1.72.02.3-1.2-1.5-1.5
Incentive salience index mean0.60.71.41.20.7-0.5
Condit. Reinf. lever presses0.81.12.01.41.0-0.6
Condit. Reinf. active minus inactive responses0.20.30.60.20.50.8
Condit. Reinf. active-inactive response ratio0.40.40.60.40.70.8
Condit. Reinf. active responses0.10.20.30.20.40.5
Condit. Reinf. inactive responses0.20.30.5-0.6-0.7-0.2
Condit. Reinf. lever presses0.00.00.00.1-0.00.0
Condit. Reinf. lever reinforcers received0.20.30.30.50.60.5
Conditioned reinforcement - actives0.10.10.3-0.3-0.10.6
Conditioned reinforcement - inactives1.11.21.7-1.3-0.91.0
Conditioned locomotion0.40.51.2-0.40.11.1
Patch foraging indifference point 0 sec0.10.20.30.50.2-0.3
Patch foraging indifference point AUC0.10.10.10.20.30.4
Delay disc. indifference point, 0s delay0.10.10.4-0.00.10.6
Delay disc. indifference point, 16s delay1.81.83.3-1.8-1.40.6
Delay disc. indifference point, 2s delay0.30.40.6-0.4-0.6-0.8
Delay disc. indifference point, 24s delay2.82.74.5-2.1-1.9-0.3
Delay disc. indifference point, 4s delay0.40.40.6-0.7-0.8-0.4
Delay disc. indifference point, 8s delay1.11.21.5-1.2-1.2-0.7
Indifference point function ln k0.00.00.10.20.1-0.2
Indifference point function log k0.00.00.10.20.1-0.2
Patch foraging total patch changes 0 sec0.10.10.20.30.0-0.5
Patch foraging total patch changes 12 sec0.00.00.00.2-0.0-0.2
Patch foraging total patch changes 18 sec0.20.30.40.60.1-0.7
Patch foraging total patch changes 24 sec0.40.51.01.00.6-0.5
Patch foraging total patch changes 6 sec0.20.40.6-0.7-0.70.1
Patch foraging time to switch 0 sec1.62.43.4-1.7-1.8-1.0
Patch foraging water rate 0 sec0.30.50.91.00.6-0.4
Patch foraging water rate 12 sec2.43.65.92.42.20.2
Patch foraging water rate 18 sec0.20.30.50.70.7-0.0
Patch foraging water rate 24 sec0.50.71.01.01.00.2
Patch foraging water rate 6 sec1.52.23.01.71.70.7
Seeking ratio, delayed vs. immediate footshock0.30.30.80.20.40.9
Distance traveled before self-admin1.11.11.4-0.8-1.2-1.2
Distance traveled after self-admin0.40.50.70.80.4-0.7
Extensor digitorum longus weight0.93.64.51.82.11.8
Bone: elastic displacement0.40.50.8-0.9-0.8-0.0
Bone: elastic work0.10.10.1-0.3-0.10.3
Bone: endosteal estimation1.02.33.21.51.81.1
Bone: endosteal perimeter0.20.30.60.80.60.0
Epididymis fat weight0.41.01.41.20.3-1.2
Delta time in closed arm before/after self-admin0.00.00.1-0.2-0.20.2
Delta time in open arm before/after self-admin0.50.51.4-0.30.31.2
Diff in mean of infusions in LGA sessions0.40.40.4-0.6-0.6-0.7
Delay discount exponential model param1.21.32.21.51.30.1
Extinction: sum of active levers before priming0.10.10.1-0.2-0.3-0.3
Active lever presses in extinction session 62.82.73.1-1.6-1.8-1.5
Bone: final force0.20.30.80.40.1-0.9
Bone: final moment0.20.30.60.50.2-0.8
Food consumed during 24 hour testing period0.60.70.80.80.80.9
Glucose0.10.20.6-0.20.10.8
Heart weight0.81.11.81.41.2-0.1
Delay discount hyperbolic model param1.31.42.11.41.40.4
Intermittent access intake day 1-15 change0.20.20.4-0.5-0.6-0.1
Intermittent access intake escalation0.20.20.4-0.4-0.7-0.2
Intermittent access intake escalation 20.10.10.10.10.00.4
Intermitt. access day 1 inactive lever presses0.20.20.6-0.10.20.8
Intermitt. access day 15 inactive lever presses0.60.71.9-0.10.41.4
Intermitt. access escalation Index0.30.20.40.50.60.2
Intermittent access day 1 total infusions0.60.71.3-0.9-0.21.1
Intermittent access day 15 total infusions0.60.71.5-0.7-0.31.2
Intermittent access terminal intake (last 3 days)0.50.61.1-0.7-0.31.1
Intermittent access total infusions0.40.40.6-0.8-0.40.6
Intermittent access day 1 locomotion0.90.92.40.00.71.5
Intermittent access day 15 total locomotion1.31.43.1-1.0-0.31.8
Intermittent access total locomotion0.91.02.3-0.9-0.21.5
Intermittent access standard deviation1.11.11.51.21.20.6
Left kidney weight0.41.21.71.31.30.3
Right kidney weight0.10.30.50.40.60.7
Cocaine induced anxiety0.00.00.0-0.1-0.2-0.0
Post-drug Anxiety1.01.21.91.41.20.1
Baseline Anxiety0.10.10.20.50.5-0.1
Tail length0.00.10.2-0.4-0.00.4
Length with tail0.10.51.00.30.61.0
Length without tail0.30.60.90.60.70.9
Times rat made contact with spout2.63.03.61.81.91.5
Lifetime Intake0.60.61.2-1.1-0.80.3
Liver weight, left1.22.02.71.51.61.0
Liver weight, right3.05.07.51.52.32.7
Locomotor activity0.10.20.20.40.50.4
Locomotor testing distance0.00.10.10.30.30.1
Locomotor testing rearing0.10.10.3-0.00.20.5
Locomotion in novel chamber1.92.33.8-2.0-1.21.3
Locomotion in novel chamber post-restriction0.00.00.0-0.0-0.1-0.2
Fecal boli incidents, locomotor time 12.02.23.2-1.1-1.5-1.8
Change in fecal boli incidents, locomotor task0.70.61.2-0.7-0.31.1
Time >=10cm from walls, locomotor time 10.50.50.7-0.8-0.8-0.3
Bouts of movement, locomotor time 11.01.12.0-1.4-0.80.7
Total resting periods, locomotor time 10.50.51.0-1.0-0.60.4
Rest time, locomotor task time 10.30.41.00.4-0.0-1.0
Distance moved, locomotor task time 10.20.20.4-0.5-0.6-0.2
Vertical activity count, locomotor time 10.50.61.0-0.8-0.31.0
Time >=10cm from walls, locomotor time 20.00.00.0-0.2-0.20.2
Bouts of movement, locomotor time 20.20.20.4-0.5-0.10.6
Total resting periods, locomotor time 20.10.10.2-0.5-0.30.2
Rest time, locomotor task time 20.50.61.2-0.3-0.7-1.1
Distance moved, locomotor task time 20.10.10.10.40.1-0.3
Vertical activity count, locomotor time 20.30.40.60.40.60.8
Light reinforcement 11.22.22.71.51.61.4
Light reinforcement 22.43.13.81.71.91.7
Bone: marrow area1.02.23.11.51.81.2
Bone: maximum diameter0.30.50.60.70.80.6
Bone: maximum force0.10.10.20.40.3-0.3
Bone: maximum moment0.10.20.30.50.5-0.2
Mean time between licks in bursts1.21.72.1-1.1-1.5-1.4
Mean num. licks in bursts2.22.74.22.01.90.5
Cd content in liver0.50.51.50.10.41.2
Co content in liver0.10.20.3-0.5-0.40.0
Cu content in liver0.40.50.70.50.70.8
Fe content in liver0.10.10.20.40.40.3
K content in liver0.90.91.31.11.20.3
Mg content in liver0.50.50.90.90.8-0.0
Mn content in liver0.40.50.70.80.80.3
Na content in liver0.60.60.91.00.90.0
Rb content in liver0.91.11.41.01.20.9
Se content in liver0.30.41.10.3-0.2-1.0
Sr content in liver0.10.10.10.30.3-0.2
Zn content in liver0.20.30.40.60.5-0.4
Bone: minimum diameter0.20.30.50.70.70.2
Time in familiar zone, hab. session 10.40.40.60.70.80.4
Time in novel zone, hab. session 10.30.30.5-0.7-0.50.4
Total zone transitions, hab. session 11.31.94.00.61.12.0
Total locomotion distance, hab. session 10.60.92.4-0.00.41.6
Locomotion velocity, hab. session 10.30.51.4-0.10.21.2
Time in familiar zone, hab. session 20.60.60.90.40.91.0
Time in novel zone, hab. session 20.90.91.5-0.5-1.0-1.2
Total zone transitions, hab. session 20.91.22.70.40.81.7
Total locomotion distance, hab. session 20.50.61.2-0.7-0.31.1
Locomotion velocity, hab. session 20.50.71.4-0.7-0.31.2
Novel to familiar place preference ratio0.10.10.20.50.30.2
Novelty place preference0.00.00.00.1-0.0-0.1
Time in novel zone, NPP test0.00.00.00.10.00.1
Total zone transitions, NPP test1.31.94.40.41.12.1
Total locomotion distance, NPP test1.11.54.1-0.20.52.0
Locomotion velocity, NPP test0.91.33.7-0.30.41.9
Intraocular pressure0.30.50.8-0.9-0.7-0.2
Delta distance traveled before/after self-admin0.80.91.51.20.9-0.7
Delta ambulatory time before/after self-admin1.01.11.91.41.1-0.5
Parametrial fat weight0.10.10.10.30.30.3
Pavlov. Cond. lever latency0.10.10.1-0.4-0.20.2
Pavlov. Cond. magazine entry latency0.81.01.4-0.8-1.2-0.9
Pavlov. Cond. change in total contacts1.11.22.2-0.5-1.0-1.5
Pavlov. Cond. index score1.01.31.7-0.7-1.2-1.3
Pavlov. Cond. latency score0.60.71.2-0.4-0.9-1.1
Pavlov. Cond. lever contacts0.10.10.20.0-0.2-0.4
Pavlov. Cond. magazine entry number1.82.23.11.41.81.3
Pavlov. Cond. intertrial magazine entries0.00.00.00.1-0.0-0.2
Pavlov. Cond. lever-magazine prob. diff.0.91.21.8-0.6-1.1-1.3
Pavlov. Cond. response bias0.70.81.4-0.5-0.9-1.2
Pavlov. Cond. lever latency0.00.00.0-0.2-0.1-0.1
Pavlov. Cond. magazine entry latency0.60.71.7-0.1-0.6-1.3
Pavlov. Cond. change in total contacts1.41.92.6-1.0-1.5-1.6
Pavlov. Cond. index score0.40.51.3-0.0-0.5-1.1
Pavlov. Cond. latency score0.50.61.4-0.1-0.6-1.2
Pavlov. Cond. lever contacts0.00.10.2-0.00.00.4
Pavlov. Cond. magazine entry number2.02.43.11.41.81.5
Pavlov. Cond. intertrial magazine entries1.41.92.51.61.60.8
Pavlov. Cond. lever-magazine prob. diff.0.60.71.6-0.2-0.7-1.3
Pavlov. Cond. response bias0.10.10.2-0.3-0.4-0.3
Time in closed arm before self-admin1.11.32.2-1.5-1.2-0.3
Time in closed arm after self-admin0.20.20.3-0.6-0.6-0.0
Time in open arm before self-admin0.91.02.70.6-0.2-1.6
Time in open arm after self-admin0.00.00.10.00.20.3
Bone: periosteal estimation0.61.21.71.11.31.0
Bone: periosteal perimeter0.00.00.10.0-0.1-0.3
Bone: post-yield work1.11.52.51.61.40.2
Progressive ratio test 1 active lever presses1.71.82.7-1.5-0.61.7
Progressive ratio test 1 breakpoint1.71.83.1-1.4-0.61.7
Progressive ratio test 1 inactive lever presses2.32.54.4-2.1-1.50.9
Progressive ratio test 2 active lever presses0.50.51.30.00.31.2
Progressive ratio test 2 breakpoint0.50.61.6-0.40.01.3
Progressive ratio test 2 inactive lever presses1.41.62.5-1.4-0.61.6
Incentive Sensitization - Responses0.50.51.01.00.7-0.2
Incentive Sensitization - Breakpoint0.30.30.70.90.6-0.1
Sum of active levers in priming session hrs 5-60.80.81.3-1.1-1.0-0.3
Progressive ratio3.54.05.3-2.0-2.3-1.7
Food seeking constrained by brief footshock0.81.01.71.31.10.1
Seeking ratio, punishment vs. effort2.93.54.71.92.21.4
Retroperitoneal fat weight0.31.01.20.91.11.1
Reaction time number correct5.27.510.73.03.31.7
Reaction time mean minus median3.24.37.8-2.8-2.10.8
Reaction time mean minus median AUC1.62.13.8-2.0-1.40.9
Reaction time num false alarms0.10.20.4-0.30.10.6
Reaction time num false alarms AUC0.20.30.5-0.7-0.5-0.2
Reaction time trials correct on left5.27.510.73.03.31.7
Reaction time trials on left4.76.79.52.83.11.6
Reaction time mean12.417.426.1-5.1-4.9-1.4
Reaction time mean AUC11.615.623.3-4.8-4.6-1.4
Median of all reaction times13.718.927.1-5.2-5.1-1.8
Reaction time omissions6.38.614.7-3.8-3.3-0.3
Reaction time false alarm rate1.82.53.4-1.9-1.8-0.9
Reaction time premature initiation rate0.70.91.0-0.8-1.0-1.0
Reaction time premature initiations0.30.50.70.90.80.0
Std. dev. reaction times7.410.418.2-4.3-3.60.2
Reaction time trials completed4.76.79.52.83.11.6
Reaction time trials AUC4.76.79.52.83.11.7
Run reversals in cocaine runway, females0.70.71.31.10.8-0.4
Run reversals in cocaine runway, males0.60.61.0-0.8-1.0-0.5
Latency to leave start box in cocaine runway0.70.81.0-1.0-1.0-0.6
Latency to leave start box in cocaine runway, F0.40.50.9-0.4-0.6-1.0
Latency to leave start box in cocaine runway, M1.41.42.4-1.5-1.3-0.0
Std. dev. time between licks in bursts1.31.62.0-1.1-1.4-1.2
Total sessions with >9 infusions0.10.10.1-0.3-0.20.3
Short access day 1 total inactive lever presses1.21.32.1-1.5-1.00.9
Short access day 10 total inactive lever presses0.10.10.10.20.30.4
Short access day 1 total infusions0.80.81.4-1.2-1.00.3
Short access day 10 total infusions1.31.52.7-1.7-1.20.5
Short access total infusions0.91.01.9-1.4-1.10.3
Short access day 1 locomotion0.80.91.8-0.9-0.31.4
Short access day 10 total locomotion0.91.02.30.30.71.5
Short access total locomotion1.51.64.30.00.72.1
One hour access (0.3 mA shock)0.10.10.2-0.4-0.40.4
Compulsive drug intake3.83.96.92.61.8-1.2
One hour access (shock baseline)1.82.03.5-1.9-1.30.9
Social response proportion0.20.20.2-0.4-0.4-0.3
Social responses0.70.91.31.11.10.5
Social time0.20.20.5-0.1-0.3-0.7
Soleus weight1.03.04.91.11.72.2
Bone: stiffness0.30.40.60.50.70.7
Tibialis anterior weight0.41.31.61.01.31.2
Time to tail flick, vehicle, before self-admin0.50.50.8-0.9-0.60.7
Time to tail flick, vehicle, after self-admin0.50.60.70.90.90.4
Time to tail flick, test, before self-admin2.22.23.21.81.70.6
Time to tail flick, test, after self-admin0.10.20.20.50.2-0.5
Delta time to tail flick, vehicle, before/after SA0.30.30.50.70.4-0.5
Delta time to tail flick, test, before/after SA0.50.40.7-0.9-0.8-0.0
Tibia length1.23.46.32.52.0-0.1
Ambulatory time before self-admin0.90.91.5-0.6-1.0-1.2
Ambulatory time after self-admin0.50.51.40.1-0.3-1.2
Bone: tissue strength0.10.10.20.40.40.2
Total heroin consumption1.51.82.9-1.7-0.81.3
Bone: trabecular number0.30.51.30.1-0.3-1.1
Bone: trabecular spacing0.20.30.9-0.00.20.9
Bone: trabecular thickness0.50.60.90.81.00.4
Bone: trabecular tissue density0.00.00.00.1-0.0-0.1
Water consumed over 24 hours3.13.74.41.72.11.9
Number of responses in last shaping day0.10.10.2-0.4-0.30.1