Ranbp10

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Ranbp10 0.05 0.03 4.9e-06 0.07 0.06 0.07 0.07 3.7e-07 2.7e-06 4.7e-07 3.0e-07
2 PL gene expression Ranbp10 0.05 0.03 3.2e-07 0.07 0.05 0.06 0.06 4.7e-08 1.3e-06 6.0e-07 3.8e-07
3 NAcc gene expression Ranbp10 0.05 0.03 6.1e-10 0.06 0.06 0.05 0.06 9.1e-09 1.5e-09 3.6e-08 5.8e-09
4 BLA gene expression Ranbp10 0.23 0.12 3.0e-09 0.16 0.16 0.17 0.17 9.4e-09 7.5e-09 1.5e-09 2.8e-09

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.10.1-0.2-0.3-0.3-0.2
Area under the delay curve0.40.51.8-0.10.1-0.11.3
BMI with tail0.00.10.2-0.5-0.4-0.2-0.1
BMI without tail0.00.10.20.30.40.20.4
Body weight0.10.71.1-0.9-1.1-0.7-0.4
Weight adjusted by age0.00.00.0-0.20.0-0.10.0
Bone surface1.01.82.6-1.2-1.6-1.4-1.2
Bone volume0.81.42.0-1.0-1.4-1.4-0.9
Breakpoint value in progressive ratio session1.21.42.11.31.31.40.4
Number of licking bursts0.50.81.1-1.0-1.0-0.4-1.0
Context. condit. distance diff. score0.10.10.10.3-0.00.4-0.1
Locomotion velocity, session 10.00.00.0-0.2-0.2-0.20.0
Locomotion distance, session 10.10.20.40.50.40.60.1
Locomotion velocity, session 21.01.12.41.10.81.50.4
Locomotion distance, session 20.30.41.00.60.31.00.0
Locomotion velocity, session 30.20.20.30.40.50.60.2
Locomotion distance, session 30.00.00.10.20.30.3-0.1
Stereotopy head waving bouts, day 30.10.10.2-0.4-0.4-0.4-0.2
Stereotopy head waving duration, day 30.50.61.0-0.8-1.0-0.6-0.7
Locomotion velocity, session 70.00.00.10.2-0.1-0.30.2
Locomotion distance, session 70.00.00.00.20.1-0.0-0.0
Stereotopy head waving bouts, day 70.20.30.4-0.6-0.6-0.5-0.4
Stereotopy head waving duration, day 70.60.81.1-1.0-0.9-0.8-0.7
Locomotion velocity, session 80.00.10.20.10.10.4-0.2
Locomotion distance, session 80.40.61.40.90.61.20.2
Degree of sensitization distance0.10.10.1-0.1-0.2-0.40.1
Degree of sensitization stereotypy0.40.40.5-0.7-0.7-0.7-0.4
Conditioned locomotion1.92.12.7-1.5-1.6-1.1-1.6
Cocaine response after cond. corrected0.60.81.8-0.8-0.6-1.40.5
Cocaine response after cond. not corrected0.30.30.7-0.3-0.0-0.80.9
Cocaine response before conditioning1.21.42.21.21.31.50.7
Saline control response3.34.36.6-2.2-2.6-1.7-1.7
Bone: connectivity density0.00.10.10.10.20.3-0.2
Bone: cortical apparent density0.30.41.4-0.01.20.60.0
Bone: cortical area0.30.51.0-0.5-0.9-1.0-0.1
Bone: cortical porosity0.70.72.01.40.30.70.6
Bone: cortical porosity0.50.51.51.20.30.50.5
Bone: cortical thickness0.10.20.5-0.4-0.5-0.7-0.0
Bone: cortical thickness0.20.30.80.9-0.2-0.10.4
Bone: cortical tissue density0.40.51.5-0.01.20.70.0
Condit. Reinf. active minus inactive responses3.33.74.82.22.11.51.8
Condit. Reinf. active-inactive response ratio3.03.24.02.02.01.41.7
Condit. Reinf. active responses2.42.94.02.01.81.51.5
Condit. Reinf. inactive responses0.10.10.20.50.40.40.1
Incentive salience index mean1.82.23.11.81.61.21.3
Condit. Reinf. lever presses0.10.20.30.60.30.30.3
Condit. Reinf. active minus inactive responses0.60.81.2-1.0-0.9-1.1-0.6
Condit. Reinf. active-inactive response ratio0.60.71.2-1.0-0.7-1.1-0.5
Condit. Reinf. active responses0.30.40.4-0.6-0.7-0.6-0.6
Condit. Reinf. inactive responses0.20.30.50.70.30.70.2
Condit. Reinf. lever presses2.33.25.61.91.72.40.6
Condit. Reinf. lever reinforcers received0.00.00.1-0.1-0.2-0.0-0.3
Conditioned reinforcement - actives1.11.92.71.51.40.91.6
Conditioned reinforcement - inactives0.20.30.5-0.4-0.4-0.7-0.4
Conditioned locomotion0.60.81.2-0.9-1.0-1.1-0.5
Patch foraging indifference point 0 sec2.24.14.8-2.2-2.2-2.0-1.6
Patch foraging indifference point AUC1.42.02.9-1.3-1.7-0.9-1.6
Delay disc. indifference point, 0s delay1.01.01.90.81.00.91.4
Delay disc. indifference point, 16s delay0.40.41.40.0-0.1-0.41.2
Delay disc. indifference point, 2s delay0.30.30.4-0.6-0.6-0.50.6
Delay disc. indifference point, 24s delay0.10.10.3-0.00.20.00.6
Delay disc. indifference point, 4s delay0.20.20.4-0.20.60.20.6
Delay disc. indifference point, 8s delay0.30.41.4-0.2-0.0-0.31.2
Indifference point function ln k0.30.61.40.50.8-0.11.2
Indifference point function log k0.30.61.40.50.8-0.11.2
Patch foraging total patch changes 0 sec2.24.14.9-2.2-2.2-2.0-1.7
Patch foraging total patch changes 12 sec2.33.04.0-1.8-1.9-1.2-2.0
Patch foraging total patch changes 18 sec1.62.53.9-1.3-2.0-1.7-1.2
Patch foraging total patch changes 24 sec0.30.61.6-0.7-0.50.1-1.2
Patch foraging total patch changes 6 sec1.72.63.6-1.9-1.7-1.1-1.7
Patch foraging time to switch 0 sec0.71.42.41.01.51.40.6
Patch foraging water rate 0 sec1.02.23.2-1.3-1.8-1.6-1.1
Patch foraging water rate 12 sec0.10.20.3-0.5-0.4-0.5-0.1
Patch foraging water rate 18 sec0.10.10.2-0.5-0.1-0.3-0.4
Patch foraging water rate 24 sec0.10.20.40.2-0.4-0.50.6
Patch foraging water rate 6 sec0.81.22.0-1.0-1.1-1.4-0.5
Seeking ratio, delayed vs. immediate footshock2.43.03.9-1.8-2.0-1.9-1.0
Distance traveled before self-admin1.52.02.9-1.5-1.1-1.2-1.7
Distance traveled after self-admin0.50.61.4-0.8-0.2-0.4-1.2
Extensor digitorum longus weight0.83.25.02.21.71.81.2
Bone: elastic displacement1.61.93.2-1.5-1.4-1.8-0.5
Bone: elastic work0.81.01.9-1.1-0.9-1.4-0.4
Bone: endosteal estimation0.10.20.3-0.5-0.3-0.6-0.5
Bone: endosteal perimeter0.10.30.5-0.1-0.7-0.7-0.3
Epididymis fat weight1.55.37.9-2.3-2.8-2.7-0.9
Delta time in closed arm before/after self-admin0.20.20.4-0.2-0.5-0.20.6
Delta time in open arm before/after self-admin0.30.30.8-0.4-0.1-0.2-0.9
Diff in mean of infusions in LGA sessions0.50.61.10.80.41.10.5
Delay discount exponential model param0.40.41.60.0-0.2-0.0-1.3
Extinction: sum of active levers before priming0.50.50.80.90.70.90.3
Active lever presses in extinction session 60.00.00.0-0.0-0.0-0.20.2
Bone: final force0.71.21.81.31.01.00.9
Bone: final moment0.20.40.50.70.60.60.5
Food consumed during 24 hour testing period0.10.20.4-0.3-0.5-0.1-0.6
Glucose0.91.43.30.81.81.30.2
Heart weight0.00.10.10.00.4-0.00.4
Delay discount hyperbolic model param0.40.51.8-0.0-0.2-0.1-1.4
Intermittent access intake day 1-15 change1.12.24.01.32.01.60.6
Intermittent access intake escalation1.22.44.31.42.11.60.8
Intermittent access intake escalation 21.01.22.40.91.51.00.7
Intermitt. access day 1 inactive lever presses0.00.10.20.10.30.50.0
Intermitt. access day 15 inactive lever presses0.00.00.10.20.20.10.3
Intermitt. access escalation Index0.30.50.9-0.9-0.6-0.6-0.5
Intermittent access day 1 total infusions0.30.41.30.60.30.11.1
Intermittent access day 15 total infusions1.82.73.91.72.01.41.5
Intermittent access terminal intake (last 3 days)3.14.15.42.12.31.71.9
Intermittent access total infusions3.03.64.82.01.91.32.2
Intermittent access day 1 locomotion1.01.21.9-1.2-1.3-1.4-0.1
Intermittent access day 15 total locomotion0.20.30.8-0.7-0.3-0.9-0.0
Intermittent access total locomotion0.30.30.6-0.2-0.1-0.70.8
Intermittent access standard deviation0.10.20.5-0.3-0.4-0.7-0.4
Left kidney weight1.56.810.52.82.73.21.3
Right kidney weight1.67.310.52.92.73.21.6
Cocaine induced anxiety2.43.44.7-2.2-2.0-1.8-1.2
Post-drug Anxiety0.60.61.1-1.0-0.8-0.6-0.5
Baseline Anxiety1.61.92.41.41.61.41.1
Tail length0.10.30.50.70.20.20.7
Length with tail0.00.10.4-0.2-0.7-0.30.0
Length without tail0.41.32.0-1.3-1.4-0.9-0.9
Times rat made contact with spout1.21.41.7-1.2-1.3-1.0-1.2
Lifetime Intake2.53.14.41.91.71.22.1
Liver weight, left0.30.50.9-0.8-0.6-0.2-1.0
Liver weight, right0.20.31.1-0.4-1.1-0.3-0.1
Locomotor activity2.43.75.0-1.9-2.2-2.1-1.3
Locomotor testing distance1.62.94.1-1.6-2.0-2.0-0.8
Locomotor testing rearing0.20.40.9-0.4-0.6-0.9-0.0
Locomotion in novel chamber2.12.63.7-1.7-1.8-1.9-0.8
Locomotion in novel chamber post-restriction1.22.02.9-1.5-1.6-1.7-0.4
Fecal boli incidents, locomotor time 11.21.74.4-1.3-0.7-0.5-2.1
Change in fecal boli incidents, locomotor task0.50.50.90.80.61.00.1
Time >=10cm from walls, locomotor time 10.20.20.4-0.6-0.4-0.3-0.5
Bouts of movement, locomotor time 10.10.20.5-0.40.0-0.0-0.7
Total resting periods, locomotor time 10.20.20.6-0.20.30.2-0.8
Rest time, locomotor task time 10.30.30.50.20.70.6-0.6
Distance moved, locomotor task time 10.20.30.5-0.1-0.5-0.70.7
Vertical activity count, locomotor time 10.41.01.9-0.8-1.1-1.40.5
Time >=10cm from walls, locomotor time 20.20.30.60.80.50.70.2
Bouts of movement, locomotor time 20.60.91.00.91.00.91.0
Total resting periods, locomotor time 20.61.01.30.91.11.10.8
Rest time, locomotor task time 20.70.91.40.61.21.1-0.7
Distance moved, locomotor task time 20.91.12.0-0.6-1.3-1.40.4
Vertical activity count, locomotor time 21.11.52.4-1.1-1.5-1.50.4
Light reinforcement 11.84.46.9-1.8-2.6-2.3-1.5
Light reinforcement 22.33.54.1-2.0-1.9-2.0-1.5
Bone: marrow area0.10.20.3-0.4-0.2-0.5-0.4
Bone: maximum diameter0.40.81.1-0.8-1.0-1.1-0.5
Bone: maximum force0.20.30.50.70.50.40.6
Bone: maximum moment0.00.00.00.10.1-0.10.2
Mean time between licks in bursts0.00.10.2-0.20.2-0.50.1
Mean num. licks in bursts0.00.00.10.10.0-0.40.1
Cd content in liver0.30.30.70.50.40.00.8
Co content in liver0.20.20.70.30.2-0.20.9
Cu content in liver1.51.82.61.61.01.11.6
Fe content in liver1.92.32.8-1.7-1.7-1.5-1.1
K content in liver0.10.10.20.10.40.40.1
Mg content in liver0.30.30.5-0.7-0.7-0.4-0.4
Mn content in liver0.70.81.3-1.1-0.7-0.9-0.8
Na content in liver0.30.31.0-1.0-0.0-0.1-0.5
Rb content in liver0.91.01.91.30.60.51.4
Se content in liver0.30.30.60.70.2-0.40.8
Sr content in liver1.00.81.3-0.7-1.0-0.7-1.1
Zn content in liver2.32.53.61.91.41.11.9
Bone: minimum diameter0.20.30.9-0.4-0.6-0.9-0.1
Time in familiar zone, hab. session 10.40.40.8-0.7-0.2-0.9-0.4
Time in novel zone, hab. session 10.30.30.40.60.20.50.6
Total zone transitions, hab. session 10.71.01.5-0.9-1.2-0.6-1.1
Total locomotion distance, hab. session 10.91.22.3-1.0-1.5-0.8-1.0
Locomotion velocity, hab. session 11.11.52.8-1.1-1.7-0.8-1.2
Time in familiar zone, hab. session 21.01.12.5-1.1-0.7-1.6-0.1
Time in novel zone, hab. session 23.93.95.12.12.02.31.4
Total zone transitions, hab. session 21.62.13.1-1.4-1.8-0.9-1.6
Total locomotion distance, hab. session 20.81.01.9-0.9-1.4-0.8-0.9
Locomotion velocity, hab. session 20.81.01.8-0.8-1.4-0.6-1.1
Novel to familiar place preference ratio1.41.62.21.21.51.30.9
Novelty place preference2.42.53.41.61.81.71.2
Time in novel zone, NPP test2.22.33.11.51.81.51.3
Total zone transitions, NPP test1.52.13.0-1.5-1.7-1.0-1.5
Total locomotion distance, NPP test0.81.01.8-0.9-1.3-0.6-1.1
Locomotion velocity, NPP test0.60.91.6-0.8-1.2-0.5-1.1
Intraocular pressure0.60.91.41.20.80.71.0
Delta distance traveled before/after self-admin0.40.40.80.60.70.90.1
Delta ambulatory time before/after self-admin0.80.91.41.01.01.20.6
Parametrial fat weight6.014.218.0-4.2-3.9-3.8-2.9
Pavlov. Cond. lever latency0.10.10.4-0.4-0.0-0.60.2
Pavlov. Cond. magazine entry latency0.50.71.21.10.61.00.2
Pavlov. Cond. change in total contacts0.70.81.40.90.91.20.1
Pavlov. Cond. index score0.50.61.40.90.41.2-0.1
Pavlov. Cond. latency score0.40.51.10.80.31.0-0.0
Pavlov. Cond. lever contacts0.60.71.40.90.61.20.2
Pavlov. Cond. magazine entry number0.60.71.2-1.1-0.6-1.0-0.3
Pavlov. Cond. intertrial magazine entries0.40.41.2-0.4-0.5-1.10.3
Pavlov. Cond. lever-magazine prob. diff.0.50.71.50.90.41.2-0.1
Pavlov. Cond. response bias0.30.40.90.80.30.90.0
Pavlov. Cond. lever latency1.21.62.4-1.4-1.3-1.6-0.5
Pavlov. Cond. magazine entry latency2.93.54.72.22.01.91.3
Pavlov. Cond. change in total contacts1.42.33.11.81.71.70.6
Pavlov. Cond. index score2.93.85.02.22.12.21.1
Pavlov. Cond. latency score2.93.95.12.22.12.31.0
Pavlov. Cond. lever contacts1.52.03.11.61.51.80.5
Pavlov. Cond. magazine entry number4.45.47.1-2.7-2.6-2.3-1.6
Pavlov. Cond. intertrial magazine entries4.06.07.5-2.5-2.7-2.6-1.9
Pavlov. Cond. lever-magazine prob. diff.3.24.35.62.42.22.21.2
Pavlov. Cond. response bias2.53.44.62.11.92.11.0
Time in closed arm before self-admin3.14.06.3-2.1-1.8-1.3-2.5
Time in closed arm after self-admin2.72.84.0-2.0-1.9-1.3-1.4
Time in open arm before self-admin1.92.03.21.81.11.21.5
Time in open arm after self-admin0.20.20.40.70.60.20.3
Bone: periosteal estimation0.30.61.1-0.6-0.8-1.0-0.5
Bone: periosteal perimeter0.50.91.6-0.6-1.3-1.2-0.5
Bone: post-yield work0.50.71.1-0.8-1.0-1.1-0.2
Progressive ratio test 1 active lever presses3.74.66.12.51.91.72.5
Progressive ratio test 1 breakpoint3.44.15.52.41.71.62.3
Progressive ratio test 1 inactive lever presses0.10.10.20.30.20.20.4
Progressive ratio test 2 active lever presses2.83.33.92.01.81.51.9
Progressive ratio test 2 breakpoint2.93.34.02.01.91.61.9
Progressive ratio test 2 inactive lever presses0.20.20.80.30.3-0.00.9
Incentive Sensitization - Responses0.91.21.51.21.21.10.9
Incentive Sensitization - Breakpoint1.11.41.71.31.31.21.0
Sum of active levers in priming session hrs 5-60.40.40.90.80.20.20.9
Progressive ratio0.10.20.30.5-0.60.10.4
Food seeking constrained by brief footshock1.21.53.11.11.21.80.2
Seeking ratio, punishment vs. effort0.50.71.70.31.31.0-0.1
Retroperitoneal fat weight6.025.831.2-5.6-5.3-5.6-3.6
Reaction time number correct1.22.33.31.81.31.31.6
Reaction time mean minus median0.61.63.21.81.01.01.0
Reaction time mean minus median AUC0.61.63.71.90.81.01.1
Reaction time num false alarms0.20.30.60.60.30.40.8
Reaction time num false alarms AUC0.10.10.30.3-0.10.10.6
Reaction time trials correct on left1.22.33.31.81.31.31.6
Reaction time trials on left1.32.43.51.91.31.41.6
Reaction time mean0.00.00.10.3-0.00.10.0
Reaction time mean AUC0.10.10.30.60.20.30.2
Median of all reaction times0.10.10.1-0.2-0.4-0.3-0.3
Reaction time omissions0.10.10.40.6-0.4-0.10.0
Reaction time false alarm rate0.20.30.5-0.6-0.7-0.6-0.2
Reaction time premature initiation rate0.70.91.60.81.21.3-0.0
Reaction time premature initiations1.62.84.01.71.92.00.8
Std. dev. reaction times0.20.30.70.80.40.40.5
Reaction time trials completed1.32.43.51.91.31.41.6
Reaction time trials AUC1.32.43.61.91.31.41.6
Run reversals in cocaine runway, females2.52.54.1-1.6-1.2-1.3-2.0
Run reversals in cocaine runway, males0.70.72.2-0.6-0.4-0.4-1.5
Latency to leave start box in cocaine runway0.20.20.30.10.50.4-0.6
Latency to leave start box in cocaine runway, F0.80.91.80.91.30.90.3
Latency to leave start box in cocaine runway, M1.31.21.8-1.2-1.1-0.8-1.3
Std. dev. time between licks in bursts1.72.33.1-1.5-1.8-1.6-1.1
Total sessions with >9 infusions1.82.23.61.61.40.81.9
Short access day 1 total inactive lever presses0.10.10.3-0.10.1-0.60.3
Short access day 10 total inactive lever presses0.10.20.3-0.6-0.3-0.4-0.4
Short access day 1 total infusions0.71.02.21.00.80.31.5
Short access day 10 total infusions1.11.43.21.20.90.41.8
Short access total infusions2.73.45.51.91.71.22.4
Short access day 1 locomotion0.10.20.20.40.40.40.4
Short access day 10 total locomotion1.42.65.0-1.6-1.7-2.20.1
Short access total locomotion0.40.51.2-0.6-0.6-1.10.5
One hour access (0.3 mA shock)1.72.02.41.61.51.21.4
Compulsive drug intake0.40.51.3-0.6-0.3-0.3-1.1
One hour access (shock baseline)1.72.53.71.71.51.21.9
Social response proportion1.01.21.91.01.20.61.4
Social responses0.10.20.50.30.2-0.10.7
Social time0.50.61.80.60.4-0.31.3
Soleus weight0.30.91.3-1.1-0.8-0.8-1.0
Bone: stiffness3.04.97.22.72.22.31.5
Tibialis anterior weight0.51.63.31.80.61.31.0
Time to tail flick, vehicle, before self-admin0.40.40.70.80.70.60.3
Time to tail flick, vehicle, after self-admin0.60.71.6-0.5-0.9-1.30.6
Time to tail flick, test, before self-admin1.41.52.2-1.5-1.4-1.3-0.5
Time to tail flick, test, after self-admin0.20.20.40.1-0.1-0.50.6
Delta time to tail flick, vehicle, before/after SA1.01.01.9-0.4-0.8-1.41.1
Delta time to tail flick, test, before/after SA0.70.71.11.01.00.70.6
Tibia length0.00.10.20.20.20.4-0.4
Ambulatory time before self-admin1.82.73.4-1.8-1.3-1.5-1.8
Ambulatory time after self-admin1.01.22.4-1.3-0.7-0.6-1.5
Bone: tissue strength0.20.20.5-0.60.70.0-0.0
Total heroin consumption0.80.91.31.01.11.00.6
Bone: trabecular number0.30.50.6-0.7-0.7-0.6-0.8
Bone: trabecular spacing0.00.00.1-0.2-0.2-0.30.2
Bone: trabecular thickness0.50.61.01.00.80.70.5
Bone: trabecular tissue density0.50.71.30.71.01.10.3
Water consumed over 24 hours0.20.30.7-0.5-0.5-0.1-0.9
Number of responses in last shaping day0.30.30.70.70.40.8-0.2