RGD1565766

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression RGD1565766 0.07 0.09 9.3e-03 0.02 0.01 -0 0.01 4.6e-02 1.1e-01 3.5e-01 9.3e-02
2 Brain gene expression RGD1565766 0.1 0.08 3.0e-06 0.05 0.05 0.07 0.05 1.4e-05 1.4e-05 5.3e-07 2.1e-05
3 Adipose gene expression RGD1565766 0.23 0.14 3.8e-12 0.1 0.1 0.07 0.1 3.4e-11 3.2e-11 1.3e-08 5.2e-11
4 Liver gene expression RGD1565766 0.39 0.25 1.4e-10 0.07 0.07 0.08 0.07 1.2e-08 5.2e-08 1.4e-09 3.2e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.64.34.9-2.2-2.12.1-1.9
Area under the delay curve0.00.10.2-0.0-0.0-0.20.4
BMI with tail2.58.215.64.03.0-2.21.8
BMI without tail0.61.13.21.80.8-0.70.5
Body weight2.08.217.74.23.1-2.01.1
Weight adjusted by age0.40.51.51.20.6-0.20.1
Bone surface0.40.60.9-0.9-0.41.0-0.8
Bone volume1.32.32.6-1.6-1.31.6-1.5
Breakpoint value in progressive ratio session1.51.73.3-1.4-1.80.9-0.8
Number of licking bursts1.61.93.01.71.7-1.00.9
Context. condit. distance diff. score0.10.10.2-0.2-0.40.4-0.1
Locomotion velocity, session 10.50.60.80.40.8-0.90.9
Locomotion distance, session 10.60.71.2-0.8-0.70.7-1.1
Locomotion velocity, session 20.50.51.11.11.0-0.0-0.2
Locomotion distance, session 20.10.10.50.10.2-0.1-0.7
Locomotion velocity, session 30.00.10.2-0.00.40.10.1
Locomotion distance, session 30.00.10.10.10.4-0.20.1
Stereotopy head waving bouts, day 32.02.44.6-2.1-1.71.2-0.9
Stereotopy head waving duration, day 30.30.41.2-1.1-0.60.40.1
Locomotion velocity, session 70.10.10.20.50.40.0-0.3
Locomotion distance, session 70.70.91.20.91.1-0.90.8
Stereotopy head waving bouts, day 70.10.10.30.1-0.1-0.10.6
Stereotopy head waving duration, day 70.20.30.4-0.5-0.70.6-0.0
Locomotion velocity, session 80.50.61.3-0.4-0.60.8-1.1
Locomotion distance, session 80.40.61.2-1.1-1.00.5-0.3
Degree of sensitization distance0.60.61.11.00.7-0.70.7
Degree of sensitization stereotypy0.50.61.20.90.4-0.51.1
Conditioned locomotion2.93.44.6-1.5-2.02.1-1.7
Cocaine response after cond. corrected0.10.10.2-0.2-0.20.5-0.3
Cocaine response after cond. not corrected0.50.60.7-0.7-0.60.9-0.8
Cocaine response before conditioning1.92.32.6-1.4-1.61.5-1.6
Saline control response1.82.44.2-1.6-2.11.3-0.9
Bone: connectivity density1.62.53.1-1.6-1.81.6-1.2
Bone: cortical apparent density0.20.30.8-0.5-0.9-0.20.4
Bone: cortical area0.10.10.40.30.7-0.10.0
Bone: cortical porosity3.43.76.3-1.4-1.32.2-2.5
Bone: cortical porosity2.72.95.4-1.1-1.11.9-2.3
Bone: cortical thickness0.20.40.60.40.8-0.70.5
Bone: cortical thickness0.70.81.3-1.0-0.70.7-1.1
Bone: cortical tissue density0.20.20.6-0.4-0.8-0.20.4
Condit. Reinf. active minus inactive responses2.22.53.51.81.9-1.51.0
Condit. Reinf. active-inactive response ratio2.22.43.11.31.8-1.61.5
Condit. Reinf. active responses0.20.30.60.80.6-0.3-0.2
Condit. Reinf. inactive responses1.82.13.3-1.0-1.51.4-1.8
Incentive salience index mean0.50.61.51.21.0-0.3-0.3
Condit. Reinf. lever presses0.81.12.6-0.1-0.71.2-1.6
Condit. Reinf. active minus inactive responses1.41.81.9-1.2-1.41.3-1.4
Condit. Reinf. active-inactive response ratio0.70.81.4-0.4-0.61.1-1.2
Condit. Reinf. active responses1.01.41.9-1.0-1.41.1-1.2
Condit. Reinf. inactive responses0.30.40.7-0.5-0.90.5-0.5
Condit. Reinf. lever presses1.01.31.5-1.2-1.11.1-1.1
Condit. Reinf. lever reinforcers received0.91.31.6-0.9-1.31.0-1.2
Conditioned reinforcement - actives3.23.24.5-2.1-1.91.6-1.5
Conditioned reinforcement - inactives5.36.08.5-2.9-2.52.4-1.9
Conditioned locomotion4.95.97.6-2.4-2.42.1-2.8
Patch foraging indifference point 0 sec0.50.81.70.20.6-1.11.3
Patch foraging indifference point AUC0.00.00.1-0.20.10.20.1
Delay disc. indifference point, 0s delay1.61.74.40.21.0-1.22.1
Delay disc. indifference point, 16s delay0.00.00.1-0.1-0.2-0.30.2
Delay disc. indifference point, 2s delay0.10.20.30.00.4-0.40.5
Delay disc. indifference point, 24s delay4.03.95.5-1.5-2.11.8-2.3
Delay disc. indifference point, 4s delay0.40.41.3-0.10.1-0.61.1
Delay disc. indifference point, 8s delay0.00.00.0-0.1-0.20.10.1
Indifference point function ln k1.31.92.4-1.5-1.31.4-1.2
Indifference point function log k1.31.92.4-1.5-1.31.4-1.2
Patch foraging total patch changes 0 sec0.40.71.50.10.6-1.01.2
Patch foraging total patch changes 12 sec0.81.01.21.11.0-0.91.0
Patch foraging total patch changes 18 sec0.60.81.50.40.6-1.11.2
Patch foraging total patch changes 24 sec1.31.52.30.81.5-1.21.3
Patch foraging total patch changes 6 sec1.52.33.00.91.6-1.61.7
Patch foraging time to switch 0 sec0.40.61.01.00.1-0.80.9
Patch foraging water rate 0 sec1.72.74.3-2.1-1.71.3-1.3
Patch foraging water rate 12 sec0.10.20.4-0.00.6-0.40.4
Patch foraging water rate 18 sec1.31.84.0-2.0-1.30.9-0.8
Patch foraging water rate 24 sec0.00.10.10.20.3-0.20.0
Patch foraging water rate 6 sec0.30.51.9-1.4-0.10.2-0.3
Seeking ratio, delayed vs. immediate footshock0.20.20.40.50.60.1-0.1
Distance traveled before self-admin0.10.20.3-0.5-0.20.4-0.4
Distance traveled after self-admin0.30.30.6-0.30.8-0.60.5
Extensor digitorum longus weight2.07.910.4-2.6-2.52.8-3.2
Bone: elastic displacement2.02.23.4-1.8-1.81.1-1.1
Bone: elastic work0.70.92.2-1.5-1.20.4-0.1
Bone: endosteal estimation0.10.10.2-0.50.00.4-0.3
Bone: endosteal perimeter0.00.10.20.30.50.2-0.1
Epididymis fat weight16.438.260.67.86.3-5.44.8
Delta time in closed arm before/after self-admin0.60.61.50.30.6-0.61.2
Delta time in open arm before/after self-admin0.50.51.60.5-0.00.6-1.2
Diff in mean of infusions in LGA sessions0.30.30.70.80.30.5-0.5
Delay discount exponential model param0.00.00.00.10.2-0.1-0.1
Extinction: sum of active levers before priming0.40.40.80.1-0.50.9-0.6
Active lever presses in extinction session 62.42.43.6-0.2-1.51.9-1.9
Bone: final force0.10.20.60.50.7-0.00.2
Bone: final moment0.10.10.40.40.6-0.00.3
Food consumed during 24 hour testing period0.10.20.5-0.10.7-0.30.2
Glucose0.30.51.40.1-0.0-0.71.2
Heart weight4.97.08.42.32.9-2.62.7
Delay discount hyperbolic model param0.00.00.10.10.10.1-0.3
Intermittent access intake day 1-15 change2.72.76.9-2.6-1.70.8-0.7
Intermittent access intake escalation1.91.95.3-2.3-1.30.4-0.4
Intermittent access intake escalation 20.60.61.5-1.20.0-0.70.6
Intermitt. access day 1 inactive lever presses0.20.20.40.20.40.7-0.5
Intermitt. access day 15 inactive lever presses0.91.01.8-0.8-1.11.3-0.6
Intermitt. access escalation Index3.43.04.51.11.6-1.92.1
Intermittent access day 1 total infusions2.02.34.2-1.2-1.42.0-1.3
Intermittent access day 15 total infusions3.23.65.0-2.2-1.81.9-1.6
Intermittent access terminal intake (last 3 days)2.93.13.8-1.9-1.71.8-1.6
Intermittent access total infusions4.14.66.2-1.6-2.12.5-2.2
Intermittent access day 1 locomotion2.02.12.6-1.5-1.31.6-1.4
Intermittent access day 15 total locomotion0.40.40.8-0.9-0.70.5-0.2
Intermittent access total locomotion1.11.31.5-1.1-1.11.1-1.2
Intermittent access standard deviation0.50.60.9-0.9-0.40.8-0.8
Left kidney weight0.51.42.0-0.5-1.31.4-1.3
Right kidney weight0.10.41.41.20.2-0.20.0
Cocaine induced anxiety0.70.81.2-1.1-1.0-0.40.9
Post-drug Anxiety1.41.52.90.40.8-1.51.7
Baseline Anxiety1.61.73.51.31.9-1.00.8
Tail length0.20.50.8-0.9-0.60.6-0.8
Length with tail0.10.40.70.70.6-0.2-0.8
Length without tail0.30.61.20.90.70.1-1.1
Times rat made contact with spout0.70.92.0-0.8-0.40.8-1.4
Lifetime Intake4.65.26.8-1.8-2.32.6-2.4
Liver weight, left0.91.42.31.51.1-1.11.0
Liver weight, right4.57.59.43.03.1-2.62.3
Locomotor activity1.21.84.42.11.6-0.60.2
Locomotor testing distance0.81.32.71.71.3-0.60.6
Locomotor testing rearing0.71.02.20.5-0.41.2-1.5
Locomotion in novel chamber0.80.93.01.70.8-0.2-0.3
Locomotion in novel chamber post-restriction1.92.33.60.81.2-1.91.9
Fecal boli incidents, locomotor time 13.03.33.8-2.0-1.81.8-1.7
Change in fecal boli incidents, locomotor task3.63.45.91.31.3-2.12.4
Time >=10cm from walls, locomotor time 11.21.22.0-0.8-1.40.8-1.2
Bouts of movement, locomotor time 10.00.00.1-0.30.20.00.1
Total resting periods, locomotor time 10.10.10.3-0.6-0.20.10.0
Rest time, locomotor task time 10.10.20.5-0.7-0.2-0.00.3
Distance moved, locomotor task time 10.40.41.11.10.7-0.2-0.3
Vertical activity count, locomotor time 10.20.20.60.30.8-0.50.2
Time >=10cm from walls, locomotor time 21.71.82.9-1.5-1.71.1-0.9
Bouts of movement, locomotor time 20.40.50.70.10.7-0.80.8
Total resting periods, locomotor time 20.70.71.30.00.9-1.01.1
Rest time, locomotor task time 20.00.00.0-0.0-0.1-0.00.1
Distance moved, locomotor task time 20.00.00.0-0.1-0.00.2-0.1
Vertical activity count, locomotor time 20.10.10.2-0.4-0.10.50.1
Light reinforcement 10.40.71.5-1.2-0.90.70.1
Light reinforcement 21.52.04.4-2.1-1.60.9-0.1
Bone: marrow area0.10.10.2-0.50.00.4-0.4
Bone: maximum diameter0.00.00.0-0.10.20.00.1
Bone: maximum force0.10.20.70.40.8-0.00.0
Bone: maximum moment0.10.10.50.20.70.00.1
Mean time between licks in bursts1.62.32.91.51.4-1.41.7
Mean num. licks in bursts1.92.34.2-2.1-1.61.0-1.2
Cd content in liver0.40.51.20.11.1-0.8-0.0
Co content in liver4.45.16.7-1.5-2.62.5-2.3
Cu content in liver0.70.81.41.1-0.10.8-1.2
Fe content in liver0.30.30.6-0.8-0.50.3-0.6
K content in liver1.91.92.81.61.7-1.20.9
Mg content in liver1.51.62.11.01.2-1.31.4
Mn content in liver0.10.20.30.10.3-0.50.6
Na content in liver2.12.24.0-2.0-1.71.2-0.6
Rb content in liver0.40.40.70.70.8-0.60.5
Se content in liver0.50.60.70.90.6-0.80.7
Sr content in liver0.10.10.10.20.2-0.30.4
Zn content in liver2.12.36.72.61.4-0.60.4
Bone: minimum diameter0.81.62.81.61.7-0.70.8
Time in familiar zone, hab. session 11.21.22.11.51.4-0.60.4
Time in novel zone, hab. session 10.20.20.30.40.3-0.60.5
Total zone transitions, hab. session 10.30.50.7-0.7-0.70.5-0.9
Total locomotion distance, hab. session 10.81.11.3-1.1-1.00.9-1.1
Locomotion velocity, hab. session 11.42.02.9-1.7-1.51.2-1.2
Time in familiar zone, hab. session 20.40.50.80.30.9-0.70.7
Time in novel zone, hab. session 20.10.10.30.6-0.10.1-0.3
Total zone transitions, hab. session 20.10.10.20.00.4-0.5-0.1
Total locomotion distance, hab. session 20.10.20.40.00.6-0.6-0.0
Locomotion velocity, hab. session 20.10.10.2-0.00.5-0.4-0.2
Novel to familiar place preference ratio0.20.20.5-0.10.6-0.70.3
Novelty place preference0.40.50.80.30.9-0.90.4
Time in novel zone, NPP test0.40.51.00.41.0-0.80.1
Total zone transitions, NPP test0.81.22.4-0.6-0.71.3-1.6
Total locomotion distance, NPP test1.42.03.6-1.1-1.01.5-1.9
Locomotion velocity, NPP test1.72.42.8-1.5-1.51.6-1.7
Intraocular pressure2.63.65.11.91.4-2.32.0
Delta distance traveled before/after self-admin1.92.02.80.91.6-1.41.7
Delta ambulatory time before/after self-admin0.40.50.80.10.7-0.70.9
Parametrial fat weight10.821.028.85.35.4-3.83.5
Pavlov. Cond. lever latency0.50.71.20.00.6-1.11.1
Pavlov. Cond. magazine entry latency0.10.20.60.80.20.1-0.4
Pavlov. Cond. change in total contacts0.10.10.10.2-0.20.3-0.2
Pavlov. Cond. index score0.20.30.40.6-0.20.6-0.6
Pavlov. Cond. latency score0.10.20.30.5-0.10.4-0.5
Pavlov. Cond. lever contacts0.50.61.00.0-0.91.0-0.8
Pavlov. Cond. magazine entry number0.10.20.4-0.40.1-0.30.6
Pavlov. Cond. intertrial magazine entries1.72.02.6-1.2-1.61.5-1.3
Pavlov. Cond. lever-magazine prob. diff.0.50.61.00.1-0.71.0-0.9
Pavlov. Cond. response bias0.91.11.7-0.4-1.11.3-1.2
Pavlov. Cond. lever latency0.70.91.11.01.0-1.00.8
Pavlov. Cond. magazine entry latency0.00.10.1-0.3-0.3-0.20.2
Pavlov. Cond. change in total contacts0.10.10.2-0.4-0.20.2-0.4
Pavlov. Cond. index score0.40.50.9-0.9-0.70.5-0.5
Pavlov. Cond. latency score0.40.50.9-1.0-0.70.5-0.5
Pavlov. Cond. lever contacts0.20.20.3-0.4-0.50.6-0.4
Pavlov. Cond. magazine entry number0.00.00.1-0.2-0.20.2-0.0
Pavlov. Cond. intertrial magazine entries2.02.64.01.31.6-2.01.5
Pavlov. Cond. lever-magazine prob. diff.0.20.20.5-0.7-0.40.2-0.3
Pavlov. Cond. response bias0.30.50.7-0.6-0.90.7-0.5
Time in closed arm before self-admin0.10.10.4-0.2-0.2-0.1-0.6
Time in closed arm after self-admin0.50.51.11.00.7-0.60.1
Time in open arm before self-admin0.20.20.40.30.6-0.20.6
Time in open arm after self-admin0.10.10.1-0.3-0.20.3-0.3
Bone: periosteal estimation0.10.10.2-0.30.20.4-0.5
Bone: periosteal perimeter0.10.10.30.20.5-0.10.2
Bone: post-yield work1.62.24.4-1.0-0.81.7-2.1
Progressive ratio test 1 active lever presses2.62.84.1-0.7-1.52.0-2.0
Progressive ratio test 1 breakpoint1.81.93.0-0.6-1.31.7-1.6
Progressive ratio test 1 inactive lever presses4.34.66.5-1.6-2.22.6-2.2
Progressive ratio test 2 active lever presses2.42.63.0-1.7-1.61.5-1.5
Progressive ratio test 2 breakpoint2.52.83.3-1.8-1.71.6-1.6
Progressive ratio test 2 inactive lever presses2.93.35.4-2.3-1.91.7-1.2
Incentive Sensitization - Responses1.81.83.2-1.8-1.31.1-1.1
Incentive Sensitization - Breakpoint1.21.22.5-1.6-1.00.8-0.8
Sum of active levers in priming session hrs 5-60.10.10.2-0.20.1-0.30.4
Progressive ratio0.60.71.90.30.31.0-1.4
Food seeking constrained by brief footshock15.318.826.0-2.8-4.34.8-5.1
Seeking ratio, punishment vs. effort1.72.14.5-1.4-2.11.0-0.8
Retroperitoneal fat weight30.199.0118.510.910.2-9.49.2
Reaction time number correct0.20.20.4-0.3-0.40.5-0.6
Reaction time mean minus median0.40.62.11.4-0.00.2-0.4
Reaction time mean minus median AUC0.40.51.91.40.4-0.1-0.1
Reaction time num false alarms1.92.64.62.12.1-1.10.7
Reaction time num false alarms AUC1.82.54.22.02.0-1.10.8
Reaction time trials correct on left0.20.20.4-0.3-0.40.5-0.6
Reaction time trials on left0.20.20.4-0.2-0.40.5-0.7
Reaction time mean0.10.20.30.5-0.1-0.30.6
Reaction time mean AUC0.10.10.20.4-0.2-0.10.3
Median of all reaction times0.10.20.5-0.1-0.2-0.30.7
Reaction time omissions0.70.92.91.70.8-0.30.1
Reaction time false alarm rate2.23.14.62.02.1-1.51.2
Reaction time premature initiation rate0.10.10.3-0.1-0.0-0.50.3
Reaction time premature initiations0.10.10.2-0.4-0.3-0.20.1
Std. dev. reaction times0.40.62.11.40.2-0.40.2
Reaction time trials completed0.20.20.4-0.2-0.40.5-0.7
Reaction time trials AUC0.20.30.5-0.2-0.40.6-0.7
Run reversals in cocaine runway, females0.80.82.0-1.0-1.40.4-0.3
Run reversals in cocaine runway, males0.90.91.8-1.3-0.80.8-0.6
Latency to leave start box in cocaine runway0.10.10.3-0.5-0.10.40.0
Latency to leave start box in cocaine runway, F0.00.00.1-0.00.30.20.2
Latency to leave start box in cocaine runway, M1.31.21.4-1.2-1.11.2-0.9
Std. dev. time between licks in bursts0.60.71.20.40.7-0.91.1
Total sessions with >9 infusions6.47.09.2-1.9-2.53.0-3.0
Short access day 1 total inactive lever presses1.71.92.7-1.6-1.31.5-0.9
Short access day 10 total inactive lever presses0.30.30.60.60.4-0.10.7
Short access day 1 total infusions3.84.04.9-1.5-2.22.2-2.0
Short access day 10 total infusions4.65.16.7-1.9-2.52.6-1.9
Short access total infusions3.94.45.8-1.5-2.32.4-2.1
Short access day 1 locomotion5.35.79.1-1.3-2.22.6-3.0
Short access day 10 total locomotion1.31.41.9-1.3-0.81.3-1.4
Short access total locomotion2.12.22.7-1.4-1.21.6-1.7
One hour access (0.3 mA shock)2.53.07.0-2.6-1.71.0-1.0
Compulsive drug intake5.65.610.40.52.3-2.63.2
One hour access (shock baseline)7.18.310.8-2.2-3.12.8-3.3
Social response proportion0.10.10.3-0.2-0.60.1-0.1
Social responses0.10.20.20.40.4-0.40.4
Social time0.20.30.8-0.2-0.90.3-0.3
Soleus weight2.36.69.3-3.0-2.62.4-2.3
Bone: stiffness0.30.51.00.71.0-0.30.7
Tibialis anterior weight0.82.84.1-1.7-1.21.6-2.0
Time to tail flick, vehicle, before self-admin0.90.93.11.80.5-0.1-0.5
Time to tail flick, vehicle, after self-admin5.35.68.62.92.2-2.41.8
Time to tail flick, test, before self-admin1.41.42.5-0.9-1.01.2-1.6
Time to tail flick, test, after self-admin0.70.71.2-0.7-0.71.1-0.9
Delta time to tail flick, vehicle, before/after SA2.52.53.80.91.4-1.81.9
Delta time to tail flick, test, before/after SA1.21.02.1-1.4-1.11.0-0.2
Tibia length0.61.62.21.31.5-1.30.9
Ambulatory time before self-admin0.10.10.2-0.2-0.20.3-0.4
Ambulatory time after self-admin0.20.20.3-0.40.6-0.40.5
Bone: tissue strength0.80.81.60.50.7-0.91.3
Total heroin consumption2.52.95.8-2.4-2.20.9-0.6
Bone: trabecular number2.74.34.8-2.2-2.02.2-1.9
Bone: trabecular spacing0.60.71.10.60.7-1.11.0
Bone: trabecular thickness0.40.50.9-0.3-0.60.9-1.0
Bone: trabecular tissue density0.10.20.4-0.1-0.30.4-0.6
Water consumed over 24 hours0.10.10.3-0.30.10.2-0.5
Number of responses in last shaping day2.22.33.0-1.4-1.71.7-1.2