Ppp2r5d

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Ppp2r5d 0.03 0.03 4.5e-03 0.01 0.01 0.01 0.01 2.1e-02 9.8e-03 7.6e-03 2.2e-02
2 Adipose gene expression Ppp2r5d 0.06 0.06 1.8e-04 0.04 0.03 0.03 0.04 5.4e-05 3.3e-04 2.7e-04 9.1e-05
3 NAcc gene expression Ppp2r5d 0.02 0.02 1.3e-03 0.02 0.03 0.02 0.02 9.3e-04 3.8e-04 5.1e-03 1.2e-03
4 Liver gene expression Ppp2r5d 0.17 0.07 0.0e+00 0.17 0.2 0.2 0.2 1.3e-18 2.6e-22 1.5e-21 2.2e-21

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.51.5-1.2-0.7-0.00.2
Area under the delay curve8.59.011.6-1.9-3.4-3.2-3.2
BMI with tail3.511.415.74.03.83.02.6
BMI without tail10.922.427.55.25.14.44.0
Body weight2.811.913.33.73.63.33.2
Weight adjusted by age0.20.30.80.90.20.30.3
Bone surface0.91.63.5-1.9-1.4-0.9-0.5
Bone volume0.40.61.5-1.2-0.9-0.4-0.2
Breakpoint value in progressive ratio session0.10.10.20.4-0.2-0.3-0.4
Number of licking bursts4.24.97.21.02.12.62.7
Context. condit. distance diff. score0.20.30.50.40.40.60.7
Locomotion velocity, session 10.70.72.31.50.70.0-0.2
Locomotion distance, session 12.12.73.51.91.81.51.4
Locomotion velocity, session 25.05.811.03.32.51.91.6
Locomotion distance, session 21.21.72.81.71.51.00.9
Locomotion velocity, session 30.50.62.21.50.50.0-0.2
Locomotion distance, session 31.01.11.7-0.3-1.0-1.3-1.3
Stereotopy head waving bouts, day 31.11.31.61.01.31.21.1
Stereotopy head waving duration, day 31.61.92.61.61.51.31.0
Locomotion velocity, session 70.40.41.31.10.4-0.2-0.4
Locomotion distance, session 70.20.30.70.80.3-0.3-0.4
Stereotopy head waving bouts, day 70.20.30.40.30.50.60.7
Stereotopy head waving duration, day 70.10.10.3-0.5-0.20.30.4
Locomotion velocity, session 80.50.61.21.10.70.70.6
Locomotion distance, session 81.01.51.81.31.31.11.2
Degree of sensitization distance1.61.62.21.51.51.10.9
Degree of sensitization stereotypy0.30.30.6-0.8-0.7-0.3-0.1
Conditioned locomotion2.32.74.4-0.5-1.5-2.0-2.1
Cocaine response after cond. corrected0.20.30.4-0.6-0.5-0.4-0.4
Cocaine response after cond. not corrected0.40.50.6-0.7-0.7-0.7-0.7
Cocaine response before conditioning0.10.10.30.50.2-0.2-0.3
Saline control response0.00.10.20.4-0.1-0.2-0.2
Bone: connectivity density0.81.23.9-2.0-0.9-0.10.2
Bone: cortical apparent density0.70.91.3-0.5-1.1-1.1-1.0
Bone: cortical area0.71.13.51.90.80.30.3
Bone: cortical porosity0.10.10.20.10.40.40.4
Bone: cortical porosity0.00.00.10.30.30.1-0.0
Bone: cortical thickness1.01.64.82.21.10.50.4
Bone: cortical thickness0.00.00.1-0.2-0.00.10.3
Bone: cortical tissue density0.60.81.1-0.5-1.1-1.0-0.9
Condit. Reinf. active minus inactive responses1.41.61.91.31.41.31.2
Condit. Reinf. active-inactive response ratio0.30.30.50.20.50.70.7
Condit. Reinf. active responses2.63.23.51.81.91.81.7
Condit. Reinf. inactive responses2.22.72.81.61.71.61.6
Incentive salience index mean2.02.44.02.01.61.31.2
Condit. Reinf. lever presses3.64.87.62.82.21.91.8
Condit. Reinf. active minus inactive responses0.20.20.3-0.50.00.50.6
Condit. Reinf. active-inactive response ratio1.21.22.2-0.00.91.41.5
Condit. Reinf. active responses0.00.00.1-0.3-0.10.20.2
Condit. Reinf. inactive responses0.10.20.30.3-0.3-0.5-0.5
Condit. Reinf. lever presses0.60.91.40.40.81.11.2
Condit. Reinf. lever reinforcers received0.00.00.1-0.3-0.10.10.2
Conditioned reinforcement - actives1.31.32.2-0.1-0.9-1.4-1.5
Conditioned reinforcement - inactives0.70.81.91.41.00.40.2
Conditioned locomotion0.00.00.00.10.1-0.0-0.0
Patch foraging indifference point 0 sec0.61.01.30.81.11.11.0
Patch foraging indifference point AUC0.80.93.01.70.70.0-0.3
Delay disc. indifference point, 0s delay1.92.12.8-1.3-1.5-1.4-1.7
Delay disc. indifference point, 16s delay11.111.213.5-2.3-3.7-3.7-3.6
Delay disc. indifference point, 2s delay3.74.15.4-1.3-2.3-2.1-2.3
Delay disc. indifference point, 24s delay1.11.01.8-0.9-1.3-1.0-0.8
Delay disc. indifference point, 4s delay4.44.67.4-0.2-2.2-2.5-2.7
Delay disc. indifference point, 8s delay5.45.67.1-1.3-2.7-2.6-2.6
Indifference point function ln k0.40.50.6-0.8-0.7-0.7-0.8
Indifference point function log k0.40.50.6-0.8-0.7-0.7-0.8
Patch foraging total patch changes 0 sec0.81.31.71.01.31.21.1
Patch foraging total patch changes 12 sec0.91.23.51.90.90.50.3
Patch foraging total patch changes 18 sec1.11.43.21.81.20.70.5
Patch foraging total patch changes 24 sec0.60.81.61.30.90.60.5
Patch foraging total patch changes 6 sec1.92.83.82.01.71.51.4
Patch foraging time to switch 0 sec3.45.39.7-3.1-2.7-1.7-1.2
Patch foraging water rate 0 sec2.33.710.93.31.90.60.0
Patch foraging water rate 12 sec4.46.810.83.32.92.11.8
Patch foraging water rate 18 sec0.91.22.31.51.20.80.6
Patch foraging water rate 24 sec1.42.03.31.81.71.10.8
Patch foraging water rate 6 sec0.40.61.91.40.5-0.2-0.5
Seeking ratio, delayed vs. immediate footshock1.72.02.9-1.7-1.5-1.3-1.1
Distance traveled before self-admin0.10.20.40.70.40.10.1
Distance traveled after self-admin3.03.34.41.72.11.81.6
Extensor digitorum longus weight0.10.30.60.80.60.30.3
Bone: elastic displacement0.30.30.5-0.4-0.7-0.5-0.4
Bone: elastic work0.10.10.30.20.00.40.5
Bone: endosteal estimation0.40.81.4-1.2-0.9-0.7-0.6
Bone: endosteal perimeter0.00.00.00.0-0.00.00.1
Epididymis fat weight2.35.47.21.72.22.52.7
Delta time in closed arm before/after self-admin0.40.40.7-0.20.50.70.8
Delta time in open arm before/after self-admin0.50.50.8-0.6-0.6-0.8-0.9
Diff in mean of infusions in LGA sessions0.40.51.41.20.60.1-0.1
Delay discount exponential model param8.28.711.61.73.43.23.2
Extinction: sum of active levers before priming0.00.00.00.00.0-0.0-0.1
Active lever presses in extinction session 60.30.30.70.90.0-0.3-0.5
Bone: final force0.50.71.11.10.80.70.8
Bone: final moment0.40.61.61.30.70.50.5
Food consumed during 24 hour testing period0.40.51.41.20.70.30.1
Glucose4.97.48.52.32.92.82.7
Heart weight1.31.82.5-0.7-1.3-1.6-1.6
Delay discount hyperbolic model param7.68.010.71.63.33.13.1
Intermittent access intake day 1-15 change0.20.20.80.90.2-0.2-0.2
Intermittent access intake escalation0.10.10.20.40.0-0.2-0.1
Intermittent access intake escalation 20.20.20.80.90.2-0.2-0.2
Intermitt. access day 1 inactive lever presses1.31.42.11.11.51.11.0
Intermitt. access day 15 inactive lever presses1.82.03.01.51.71.21.1
Intermitt. access escalation Index0.10.10.2-0.50.00.0-0.0
Intermittent access day 1 total infusions0.80.91.20.11.11.11.1
Intermittent access day 15 total infusions0.40.50.80.10.90.70.7
Intermittent access terminal intake (last 3 days)0.30.40.5-0.20.70.60.7
Intermittent access total infusions0.30.40.5-0.40.70.60.7
Intermittent access day 1 locomotion0.60.60.9-0.50.70.90.9
Intermittent access day 15 total locomotion0.30.40.50.50.70.60.5
Intermittent access total locomotion0.40.40.7-0.80.40.60.7
Intermittent access standard deviation2.32.54.1-2.0-1.8-1.3-1.0
Left kidney weight0.41.24.22.00.6-0.2-0.3
Right kidney weight0.41.02.51.6-0.1-0.8-1.0
Cocaine induced anxiety0.20.20.30.00.40.50.6
Post-drug Anxiety0.10.10.3-0.30.10.40.6
Baseline Anxiety0.10.20.2-0.3-0.4-0.4-0.3
Tail length1.95.65.82.42.32.42.4
Length with tail0.10.50.70.80.40.60.8
Length without tail2.14.66.3-2.1-2.5-2.1-1.8
Times rat made contact with spout4.85.57.11.62.42.72.6
Lifetime Intake0.10.10.5-0.70.10.00.1
Liver weight, left0.50.82.51.60.70.20.1
Liver weight, right0.71.11.61.30.91.01.1
Locomotor activity2.43.94.81.61.92.12.2
Locomotor testing distance2.13.54.61.51.82.02.1
Locomotor testing rearing2.64.05.82.42.21.81.5
Locomotion in novel chamber0.70.91.1-0.5-1.0-1.1-1.0
Locomotion in novel chamber post-restriction1.72.03.60.1-1.1-1.8-1.9
Fecal boli incidents, locomotor time 10.80.91.70.3-0.5-1.2-1.3
Change in fecal boli incidents, locomotor task0.20.20.40.2-0.3-0.5-0.6
Time >=10cm from walls, locomotor time 10.20.20.40.70.60.2-0.0
Bouts of movement, locomotor time 10.50.62.1-1.40.00.30.2
Total resting periods, locomotor time 10.50.50.9-0.90.50.70.7
Rest time, locomotor task time 10.91.01.3-1.0-0.8-1.0-1.1
Distance moved, locomotor task time 10.10.10.20.3-0.00.30.4
Vertical activity count, locomotor time 10.50.51.2-0.2-1.1-0.7-0.6
Time >=10cm from walls, locomotor time 20.40.51.41.20.60.2-0.0
Bouts of movement, locomotor time 20.30.40.50.30.60.70.7
Total resting periods, locomotor time 20.10.10.2-0.20.30.50.5
Rest time, locomotor task time 20.80.92.4-1.5-0.8-0.5-0.5
Distance moved, locomotor task time 20.91.01.21.01.11.00.9
Vertical activity count, locomotor time 20.30.30.40.4-0.5-0.6-0.6
Light reinforcement 11.73.04.02.02.01.51.3
Light reinforcement 22.93.95.21.12.12.22.3
Bone: marrow area0.40.91.3-1.2-1.0-0.8-0.7
Bone: maximum diameter0.20.51.61.30.5-0.0-0.1
Bone: maximum force0.10.20.40.10.20.40.7
Bone: maximum moment0.00.00.10.20.10.20.3
Mean time between licks in bursts1.41.95.0-2.2-1.3-0.7-0.6
Mean num. licks in bursts0.70.91.6-0.2-0.8-1.1-1.2
Cd content in liver1.31.52.1-0.8-1.1-1.3-1.5
Co content in liver0.00.00.0-0.20.20.1-0.0
Cu content in liver1.01.22.1-0.0-1.0-1.3-1.4
Fe content in liver0.20.30.4-0.4-0.6-0.7-0.5
K content in liver0.80.82.3-1.5-0.60.30.6
Mg content in liver1.51.52.3-1.2-1.5-1.2-1.0
Mn content in liver0.70.81.30.01.01.21.0
Na content in liver0.10.10.40.70.10.10.2
Rb content in liver5.56.88.6-2.1-2.9-2.8-2.5
Se content in liver0.10.10.20.40.30.0-0.2
Sr content in liver0.50.50.70.80.90.50.3
Zn content in liver5.35.98.9-1.1-2.2-2.9-3.0
Bone: minimum diameter0.20.40.80.90.70.40.4
Time in familiar zone, hab. session 10.70.72.21.50.80.0-0.1
Time in novel zone, hab. session 10.90.92.2-1.5-0.9-0.5-0.5
Total zone transitions, hab. session 13.95.46.92.32.62.22.1
Total locomotion distance, hab. session 13.95.58.42.92.52.01.8
Locomotion velocity, hab. session 13.55.08.12.82.41.81.7
Time in familiar zone, hab. session 21.51.52.7-1.7-1.4-1.0-0.7
Time in novel zone, hab. session 20.20.20.50.70.60.2-0.0
Total zone transitions, hab. session 23.34.26.11.02.02.42.5
Total locomotion distance, hab. session 23.24.24.91.52.22.22.2
Locomotion velocity, hab. session 22.63.44.21.31.92.02.0
Novel to familiar place preference ratio0.10.10.10.30.30.30.3
Novelty place preference0.00.00.10.20.00.00.0
Time in novel zone, NPP test0.00.00.00.20.0-0.0-0.0
Total zone transitions, NPP test6.79.610.63.03.33.13.0
Total locomotion distance, NPP test6.08.28.92.73.02.92.9
Locomotion velocity, NPP test6.89.610.22.93.13.23.2
Intraocular pressure1.11.62.2-1.5-1.0-1.1-1.3
Delta distance traveled before/after self-admin4.04.35.71.32.32.42.2
Delta ambulatory time before/after self-admin3.23.54.81.22.02.22.0
Parametrial fat weight6.011.712.73.23.63.53.4
Pavlov. Cond. lever latency2.33.06.9-2.6-1.7-1.1-1.0
Pavlov. Cond. magazine entry latency0.81.13.41.90.90.0-0.2
Pavlov. Cond. change in total contacts1.71.83.81.91.50.90.6
Pavlov. Cond. index score2.43.17.92.81.70.90.7
Pavlov. Cond. latency score1.82.36.92.61.40.50.4
Pavlov. Cond. lever contacts3.33.87.92.82.01.31.2
Pavlov. Cond. magazine entry number1.62.05.3-2.3-1.5-0.7-0.5
Pavlov. Cond. intertrial magazine entries0.70.91.3-1.1-1.1-0.8-0.7
Pavlov. Cond. lever-magazine prob. diff.2.22.77.22.71.70.80.6
Pavlov. Cond. response bias3.74.58.93.02.31.51.3
Pavlov. Cond. lever latency2.83.85.0-1.4-1.9-2.1-2.2
Pavlov. Cond. magazine entry latency2.02.42.91.31.61.61.7
Pavlov. Cond. change in total contacts2.73.85.21.41.82.12.3
Pavlov. Cond. index score4.86.17.22.12.52.62.7
Pavlov. Cond. latency score5.26.47.62.12.62.62.8
Pavlov. Cond. lever contacts3.14.25.51.62.02.22.3
Pavlov. Cond. magazine entry number1.01.21.7-1.0-1.1-1.1-1.3
Pavlov. Cond. intertrial magazine entries0.00.00.10.0-0.1-0.1-0.3
Pavlov. Cond. lever-magazine prob. diff.4.86.17.42.02.52.62.7
Pavlov. Cond. response bias1.31.72.70.91.11.41.7
Time in closed arm before self-admin0.30.31.1-1.0-0.20.00.2
Time in closed arm after self-admin0.70.71.4-1.20.20.70.9
Time in open arm before self-admin2.42.65.92.41.61.10.9
Time in open arm after self-admin0.40.51.51.20.60.1-0.2
Bone: periosteal estimation0.10.10.50.70.2-0.1-0.2
Bone: periosteal perimeter0.61.01.91.41.00.80.8
Bone: post-yield work0.10.20.3-0.50.20.40.5
Progressive ratio test 1 active lever presses1.41.52.20.11.31.41.5
Progressive ratio test 1 breakpoint1.11.11.50.21.21.21.2
Progressive ratio test 1 inactive lever presses0.80.91.60.91.30.80.6
Progressive ratio test 2 active lever presses1.01.01.91.01.40.90.7
Progressive ratio test 2 breakpoint1.51.62.71.31.71.10.9
Progressive ratio test 2 inactive lever presses0.50.51.10.81.00.50.4
Incentive Sensitization - Responses1.01.01.71.31.30.70.6
Incentive Sensitization - Breakpoint1.01.11.81.31.30.70.6
Sum of active levers in priming session hrs 5-61.71.73.20.4-0.9-1.6-1.8
Progressive ratio0.40.51.0-0.4-1.0-0.7-0.6
Food seeking constrained by brief footshock0.10.10.2-0.00.10.40.4
Seeking ratio, punishment vs. effort0.40.50.90.50.90.70.6
Retroperitoneal fat weight1.44.79.83.12.31.51.3
Reaction time number correct0.50.71.50.6-0.4-1.0-1.2
Reaction time mean minus median0.10.10.2-0.1-0.5-0.2-0.1
Reaction time mean minus median AUC0.30.40.9-0.9-0.8-0.3-0.1
Reaction time num false alarms0.60.91.1-1.0-1.0-0.9-0.8
Reaction time num false alarms AUC0.50.70.7-0.7-0.8-0.9-0.8
Reaction time trials correct on left0.50.71.50.6-0.4-1.0-1.2
Reaction time trials on left0.40.61.20.6-0.3-0.9-1.1
Reaction time mean0.50.71.7-1.3-0.20.60.9
Reaction time mean AUC0.70.92.0-1.4-0.10.71.1
Median of all reaction times0.60.91.6-1.30.10.81.1
Reaction time omissions0.60.81.10.60.91.01.0
Reaction time false alarm rate0.50.71.6-1.3-0.9-0.5-0.3
Reaction time premature initiation rate0.91.21.61.01.31.11.0
Reaction time premature initiations0.71.02.21.51.10.60.4
Std. dev. reaction times0.20.30.7-0.9-0.40.30.6
Reaction time trials completed0.40.61.20.6-0.3-0.9-1.1
Reaction time trials AUC0.40.51.00.7-0.2-0.8-1.0
Run reversals in cocaine runway, females0.70.71.91.40.70.40.3
Run reversals in cocaine runway, males0.10.10.10.20.4-0.0-0.2
Latency to leave start box in cocaine runway1.61.72.71.51.61.10.9
Latency to leave start box in cocaine runway, F0.20.20.40.10.60.50.5
Latency to leave start box in cocaine runway, M4.03.86.32.52.31.51.2
Std. dev. time between licks in bursts1.82.12.2-1.5-1.4-1.5-1.4
Total sessions with >9 infusions0.00.00.1-0.10.1-0.2-0.3
Short access day 1 total inactive lever presses0.20.20.70.80.3-0.2-0.3
Short access day 10 total inactive lever presses0.80.92.11.51.10.50.3
Short access day 1 total infusions0.40.40.7-0.4-0.5-0.8-0.8
Short access day 10 total infusions0.30.40.8-0.90.40.40.6
Short access total infusions0.40.41.2-1.1-0.4-0.4-0.3
Short access day 1 locomotion0.60.60.8-0.9-0.7-0.7-0.7
Short access day 10 total locomotion1.82.04.9-2.2-1.4-0.8-0.6
Short access total locomotion1.92.02.4-1.6-1.4-1.4-1.3
One hour access (0.3 mA shock)0.50.61.20.1-0.6-1.0-1.1
Compulsive drug intake0.30.30.60.3-0.4-0.6-0.8
One hour access (shock baseline)0.30.30.40.20.60.60.6
Social response proportion0.60.60.9-0.8-0.9-0.8-0.5
Social responses1.52.02.6-1.2-1.6-1.5-1.2
Social time2.23.05.20.2-1.3-2.2-2.3
Soleus weight0.41.21.81.31.10.91.0
Bone: stiffness0.00.00.1-0.2-0.00.10.2
Tibialis anterior weight0.20.60.70.50.80.90.8
Time to tail flick, vehicle, before self-admin0.10.10.30.0-0.3-0.5-0.3
Time to tail flick, vehicle, after self-admin1.61.73.0-1.7-1.7-0.9-0.5
Time to tail flick, test, before self-admin5.45.37.3-0.9-2.4-2.7-2.7
Time to tail flick, test, after self-admin0.50.51.1-0.3-1.1-0.7-0.6
Delta time to tail flick, vehicle, before/after SA0.50.51.0-0.9-1.0-0.4-0.3
Delta time to tail flick, test, before/after SA2.42.14.4-0.00.91.82.1
Tibia length1.95.39.13.02.51.91.6
Ambulatory time before self-admin0.20.20.30.5-0.2-0.5-0.5
Ambulatory time after self-admin2.83.13.61.71.91.81.6
Bone: tissue strength0.10.10.20.0-0.4-0.4-0.4
Total heroin consumption0.10.10.10.10.30.30.3
Bone: trabecular number0.30.41.0-1.0-0.7-0.4-0.1
Bone: trabecular spacing0.40.61.71.30.70.2-0.0
Bone: trabecular thickness0.60.82.1-1.4-0.9-0.4-0.2
Bone: trabecular tissue density0.71.02.30.5-0.3-1.2-1.5
Water consumed over 24 hours1.92.24.72.21.51.10.9
Number of responses in last shaping day0.10.10.40.60.3-0.0-0.1