Ppp2r5d

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Ppp2r5d 0.02 0.02 2.0e-03 0 0.01 0.01 0 6.7e-02 2.9e-02 2.4e-02 7.9e-02
2 Adipose gene expression Ppp2r5d 0.04 0.04 1.7e-03 0.03 0.02 0.02 0.02 5.1e-04 2.6e-03 2.5e-03 9.9e-04
3 NAcc gene expression Ppp2r5d 0.05 0.03 5.6e-09 0.06 0.05 0.05 0.06 4.0e-10 6.3e-08 3.5e-08 4.7e-09
4 Liver gene expression Ppp2r5d 0.16 0.07 0.0e+00 0.18 0.21 0.2 0.2 3.9e-19 7.6e-23 1.2e-21 3.1e-22

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.81.51.20.9-0.90.2
Area under the delay curve7.99.111.12.43.3-3.0-3.3
BMI with tail3.411.714.2-3.8-3.73.62.5
BMI without tail5.015.216.7-4.1-4.14.03.4
Body weight4.620.321.8-4.5-4.74.64.3
Weight adjusted by age0.30.40.5-0.7-0.60.70.7
Bone surface1.22.23.61.91.6-1.7-0.4
Bone volume0.61.01.71.31.1-1.1-0.1
Breakpoint value in progressive ratio session0.10.10.4-0.20.0-0.2-0.7
Number of licking bursts2.94.76.9-1.4-2.22.32.6
Context. condit. distance diff. score0.30.40.6-0.7-0.50.50.8
Locomotion velocity, session 10.50.51.2-1.1-0.70.6-0.2
Locomotion distance, session 12.22.83.8-2.0-1.71.61.4
Locomotion velocity, session 25.66.511.5-3.4-2.42.51.7
Locomotion distance, session 21.21.72.6-1.6-1.41.30.8
Locomotion velocity, session 30.50.61.3-1.1-0.70.7-0.1
Locomotion distance, session 31.11.12.00.71.0-1.0-1.4
Stereotopy head waving bouts, day 31.21.41.9-0.9-1.31.41.2
Stereotopy head waving duration, day 31.72.02.7-1.4-1.61.61.1
Locomotion velocity, session 70.30.30.6-0.8-0.40.4-0.5
Locomotion distance, session 70.10.20.3-0.5-0.30.2-0.5
Stereotopy head waving bouts, day 70.20.20.5-0.2-0.30.40.7
Stereotopy head waving duration, day 70.10.10.20.30.2-0.10.4
Locomotion velocity, session 80.60.71.5-1.2-0.70.70.6
Locomotion distance, session 81.11.62.2-1.5-1.31.21.1
Degree of sensitization distance1.81.92.4-1.6-1.51.40.9
Degree of sensitization stereotypy0.30.40.60.60.8-0.6-0.2
Conditioned locomotion2.42.85.21.11.5-1.6-2.3
Cocaine response after cond. corrected0.20.20.40.60.4-0.5-0.4
Cocaine response after cond. not corrected0.40.50.60.70.6-0.8-0.8
Cocaine response before conditioning0.10.10.2-0.4-0.1-0.1-0.4
Saline control response0.10.10.3-0.50.1-0.1-0.2
Bone: connectivity density1.01.53.61.91.1-1.20.2
Bone: cortical apparent density0.40.50.80.40.8-0.8-0.9
Bone: cortical area0.71.12.9-1.7-0.70.90.4
Bone: cortical porosity0.10.10.10.2-0.30.30.4
Bone: cortical porosity0.00.10.1-0.0-0.30.30.1
Bone: cortical thickness0.81.33.4-1.8-0.80.90.4
Bone: cortical thickness0.00.00.10.40.1-0.10.2
Bone: cortical tissue density0.40.60.80.40.8-0.9-0.9
Condit. Reinf. active minus inactive responses1.51.72.0-1.3-1.41.41.2
Condit. Reinf. active-inactive response ratio0.30.30.5-0.3-0.60.50.7
Condit. Reinf. active responses2.93.63.9-2.0-2.01.91.7
Condit. Reinf. inactive responses2.32.83.2-1.7-1.81.71.6
Incentive salience index mean2.32.84.2-2.0-1.71.71.2
Condit. Reinf. lever presses4.05.78.4-2.9-2.32.31.8
Condit. Reinf. active minus inactive responses0.10.10.50.1-0.10.20.7
Condit. Reinf. active-inactive response ratio0.91.12.4-0.4-0.90.91.6
Condit. Reinf. active responses0.00.00.1-0.00.00.10.4
Condit. Reinf. inactive responses0.10.10.3-0.20.3-0.2-0.5
Condit. Reinf. lever presses0.70.91.7-0.7-0.80.91.3
Condit. Reinf. lever reinforcers received0.00.00.10.00.1-0.00.3
Conditioned reinforcement - actives0.50.82.1-0.40.7-0.8-1.4
Conditioned reinforcement - inactives0.30.40.8-0.9-0.70.70.2
Conditioned locomotion0.10.20.2-0.3-0.50.40.4
Patch foraging indifference point 0 sec0.71.31.7-1.0-1.11.31.0
Patch foraging indifference point AUC0.71.02.6-1.6-0.80.8-0.3
Delay disc. indifference point, 0s delay2.62.93.92.01.5-1.3-1.8
Delay disc. indifference point, 16s delay10.411.413.42.53.7-3.6-3.6
Delay disc. indifference point, 2s delay3.84.25.11.92.1-1.9-2.3
Delay disc. indifference point, 24s delay0.91.01.40.91.2-1.1-0.7
Delay disc. indifference point, 4s delay3.73.97.80.72.0-1.8-2.8
Delay disc. indifference point, 8s delay4.65.36.91.72.5-2.3-2.6
Indifference point function ln k0.50.81.41.20.7-0.9-0.8
Indifference point function log k0.50.81.41.20.7-0.9-0.8
Patch foraging total patch changes 0 sec0.91.62.1-1.2-1.31.51.1
Patch foraging total patch changes 12 sec1.21.64.0-2.0-0.91.20.3
Patch foraging total patch changes 18 sec1.01.52.8-1.7-1.21.30.4
Patch foraging total patch changes 24 sec0.50.91.6-1.2-1.01.10.4
Patch foraging total patch changes 6 sec2.53.75.8-2.4-1.81.91.5
Patch foraging time to switch 0 sec2.85.88.22.92.6-2.6-1.2
Patch foraging water rate 0 sec1.83.77.4-2.7-1.92.00.0
Patch foraging water rate 12 sec3.47.28.8-3.0-2.92.81.8
Patch foraging water rate 18 sec1.01.52.0-1.4-1.31.40.7
Patch foraging water rate 24 sec1.52.12.8-1.6-1.51.70.8
Patch foraging water rate 6 sec0.20.30.5-0.7-0.50.5-0.5
Seeking ratio, delayed vs. immediate footshock1.72.02.41.61.5-1.5-1.0
Distance traveled before self-admin0.00.10.1-0.3-0.30.2-0.1
Distance traveled after self-admin1.61.92.6-1.3-1.61.61.0
Extensor digitorum longus weight0.10.40.7-0.7-0.90.60.3
Bone: elastic displacement0.50.50.80.50.9-0.8-0.6
Bone: elastic work0.10.10.4-0.30.10.10.6
Bone: endosteal estimation0.40.81.31.10.9-0.9-0.6
Bone: endosteal perimeter0.00.10.1-0.2-0.10.30.3
Epididymis fat weight3.110.612.3-2.9-3.33.33.5
Delta time in closed arm before/after self-admin0.30.31.00.5-0.1-0.01.0
Delta time in open arm before/after self-admin0.30.30.90.50.4-0.2-1.0
Diff in mean of infusions in LGA sessions0.60.81.4-1.2-1.00.80.3
Delay discount exponential model param7.88.710.4-2.2-3.23.03.2
Extinction: sum of active levers before priming0.10.10.30.0-0.00.0-0.6
Active lever presses in extinction session 60.20.20.4-0.6-0.30.3-0.4
Bone: final force0.60.91.4-1.2-0.70.91.0
Bone: final moment0.50.81.6-1.3-0.60.80.6
Food consumed during 24 hour testing period0.40.51.0-1.0-0.70.80.0
Glucose6.810.612.0-3.3-3.53.32.9
Heart weight0.20.31.0-1.0-0.30.40.2
Delay discount hyperbolic model param7.07.89.5-2.1-3.12.83.1
Intermittent access intake day 1-15 change0.00.10.3-0.60.00.1-0.0
Intermittent access intake escalation0.00.10.2-0.50.10.00.0
Intermittent access intake escalation 20.10.20.2-0.40.4-0.3-0.5
Intermitt. access day 1 inactive lever presses0.41.42.6-0.4-1.21.21.6
Intermitt. access day 15 inactive lever presses0.40.71.2-0.6-1.10.80.8
Intermitt. access escalation Index0.00.10.20.5-0.0-0.1-0.1
Intermittent access day 1 total infusions0.40.71.2-0.6-1.10.80.8
Intermittent access day 15 total infusions0.30.40.6-0.6-0.80.50.6
Intermittent access terminal intake (last 3 days)0.00.00.0-0.1-0.2-0.10.0
Intermittent access total infusions0.10.20.3-0.4-0.60.30.3
Intermittent access day 1 locomotion0.70.91.5-0.3-1.20.91.1
Intermittent access day 15 total locomotion0.61.11.2-1.0-1.11.11.0
Intermittent access total locomotion0.60.71.1-0.3-1.00.91.0
Intermittent access standard deviation1.12.22.81.71.6-1.7-0.9
Left kidney weight1.57.19.4-3.1-2.72.72.0
Right kidney weight1.46.611.0-3.3-2.52.71.4
Cocaine induced anxiety0.20.20.70.0-0.20.30.9
Post-drug Anxiety0.10.20.5-0.2-0.10.20.7
Baseline Anxiety0.40.51.00.20.6-0.8-1.0
Tail length1.66.17.9-2.3-2.42.42.8
Length with tail1.35.69.9-1.7-2.22.23.1
Length without tail0.82.43.9-1.3-1.51.42.0
Times rat made contact with spout4.95.66.6-1.9-2.42.52.6
Lifetime Intake0.00.00.10.20.0-0.3-0.2
Liver weight, left0.40.61.9-1.4-0.50.4-0.3
Liver weight, right2.85.07.5-2.7-2.12.11.9
Locomotor activity2.64.05.0-2.0-1.92.02.2
Locomotor testing distance2.34.25.7-1.8-2.01.92.4
Locomotor testing rearing2.14.35.7-2.4-2.12.21.4
Locomotion in novel chamber0.81.01.30.71.1-1.0-1.1
Locomotion in novel chamber post-restriction0.81.33.1-0.10.8-1.2-1.8
Fecal boli incidents, locomotor time 10.50.71.9-0.10.7-0.7-1.4
Change in fecal boli incidents, locomotor task0.20.10.40.00.3-0.3-0.7
Time >=10cm from walls, locomotor time 10.30.30.5-0.6-0.60.70.0
Bouts of movement, locomotor time 10.50.52.11.40.00.00.2
Total resting periods, locomotor time 10.40.50.80.9-0.50.60.7
Rest time, locomotor task time 10.81.01.91.40.9-0.7-0.9
Distance moved, locomotor task time 10.10.10.3-0.4-0.20.20.5
Vertical activity count, locomotor time 10.20.50.90.10.9-0.9-0.6
Time >=10cm from walls, locomotor time 20.30.50.8-0.7-0.80.90.1
Bouts of movement, locomotor time 20.30.40.5-0.6-0.60.70.7
Total resting periods, locomotor time 20.10.10.2-0.1-0.20.40.5
Rest time, locomotor task time 20.70.82.11.50.8-0.6-0.4
Distance moved, locomotor task time 20.91.11.5-0.8-1.21.20.9
Vertical activity count, locomotor time 20.10.20.3-0.20.4-0.5-0.6
Light reinforcement 11.33.24.2-2.1-1.81.91.2
Light reinforcement 22.33.64.9-1.5-1.91.92.2
Bone: marrow area0.40.81.21.10.9-0.9-0.6
Bone: maximum diameter0.30.51.2-1.1-0.50.70.0
Bone: maximum force0.10.20.5-0.3-0.10.20.7
Bone: maximum moment0.00.10.2-0.40.00.10.4
Mean time between licks in bursts1.12.85.12.31.6-1.7-0.9
Mean num. licks in bursts0.50.81.40.50.9-0.8-1.2
Cd content in liver1.92.13.01.71.3-1.4-1.4
Co content in liver0.10.10.40.70.2-0.3-0.1
Cu content in liver0.30.41.00.10.5-0.5-1.0
Fe content in liver0.10.10.4-0.6-0.30.10.0
K content in liver0.40.40.90.70.2-0.21.0
Mg content in liver0.10.10.20.20.5-0.4-0.0
Mn content in liver0.30.30.50.2-0.50.70.7
Na content in liver0.91.02.2-1.5-0.70.80.7
Rb content in liver3.64.25.61.52.2-2.4-2.1
Se content in liver0.70.81.3-0.8-1.21.00.3
Sr content in liver0.90.81.2-1.1-0.90.90.5
Zn content in liver1.61.82.70.91.4-1.4-1.6
Bone: minimum diameter0.30.50.8-0.9-0.60.70.5
Time in familiar zone, hab. session 10.60.61.4-1.2-0.80.7-0.1
Time in novel zone, hab. session 11.01.02.21.50.9-0.9-0.5
Total zone transitions, hab. session 14.15.76.2-2.5-2.52.52.1
Total locomotion distance, hab. session 14.26.08.2-2.9-2.52.51.7
Locomotion velocity, hab. session 13.85.47.7-2.8-2.42.31.6
Time in familiar zone, hab. session 21.61.72.21.41.5-1.5-0.8
Time in novel zone, hab. session 20.20.20.4-0.4-0.60.60.0
Total zone transitions, hab. session 23.03.96.0-1.4-1.91.92.5
Total locomotion distance, hab. session 23.14.14.5-1.7-2.12.12.1
Locomotion velocity, hab. session 22.53.33.9-1.5-1.91.92.0
Novel to familiar place preference ratio0.10.10.1-0.3-0.30.40.2
Novelty place preference0.00.00.0-0.20.00.10.0
Time in novel zone, NPP test0.00.00.0-0.10.00.1-0.1
Total zone transitions, NPP test6.69.610.4-3.2-3.03.13.0
Total locomotion distance, NPP test6.18.38.6-2.9-2.92.92.8
Locomotion velocity, NPP test6.99.710.2-3.2-3.03.13.2
Intraocular pressure0.81.22.51.60.7-0.8-1.1
Delta distance traveled before/after self-admin2.22.33.1-1.0-1.61.81.6
Delta ambulatory time before/after self-admin2.53.14.2-1.4-1.82.01.7
Parametrial fat weight4.29.911.5-2.8-3.43.23.2
Pavlov. Cond. lever latency2.93.67.72.81.7-1.7-1.0
Pavlov. Cond. magazine entry latency0.70.82.3-1.5-0.70.6-0.4
Pavlov. Cond. change in total contacts1.81.93.3-1.8-1.51.40.5
Pavlov. Cond. index score2.83.57.8-2.8-1.71.70.6
Pavlov. Cond. latency score2.02.66.5-2.6-1.31.40.3
Pavlov. Cond. lever contacts3.23.87.5-2.7-1.81.81.0
Pavlov. Cond. magazine entry number2.32.96.02.41.7-1.6-0.5
Pavlov. Cond. intertrial magazine entries1.01.11.61.31.1-1.0-0.8
Pavlov. Cond. lever-magazine prob. diff.2.53.16.9-2.6-1.61.60.5
Pavlov. Cond. response bias3.74.68.3-2.9-2.12.11.1
Pavlov. Cond. lever latency3.04.15.51.91.9-1.9-2.3
Pavlov. Cond. magazine entry latency2.83.44.0-1.8-1.81.82.0
Pavlov. Cond. change in total contacts2.74.46.1-2.0-1.92.02.5
Pavlov. Cond. index score4.96.57.6-2.6-2.42.52.7
Pavlov. Cond. latency score5.37.08.0-2.6-2.62.62.8
Pavlov. Cond. lever contacts3.44.66.2-2.1-2.02.02.5
Pavlov. Cond. magazine entry number1.11.31.71.31.0-1.0-1.3
Pavlov. Cond. intertrial magazine entries0.00.00.10.20.1-0.0-0.3
Pavlov. Cond. lever-magazine prob. diff.5.16.88.0-2.6-2.52.52.8
Pavlov. Cond. response bias1.52.13.5-1.4-1.21.21.9
Time in closed arm before self-admin0.10.10.30.6-0.0-0.20.3
Time in closed arm after self-admin0.70.72.10.7-0.50.31.5
Time in open arm before self-admin2.22.44.7-2.2-1.51.50.8
Time in open arm after self-admin0.40.41.0-1.0-0.40.6-0.4
Bone: periosteal estimation0.10.10.3-0.6-0.20.30.0
Bone: periosteal perimeter1.01.82.9-1.7-1.11.31.1
Bone: post-yield work0.10.20.60.2-0.20.30.8
Progressive ratio test 1 active lever presses0.81.01.5-0.6-1.11.01.2
Progressive ratio test 1 breakpoint0.80.91.3-0.5-1.11.01.1
Progressive ratio test 1 inactive lever presses0.71.01.3-1.1-1.21.00.7
Progressive ratio test 2 active lever presses2.32.73.5-1.8-1.91.61.2
Progressive ratio test 2 breakpoint2.73.13.9-2.0-1.91.71.3
Progressive ratio test 2 inactive lever presses0.61.01.7-1.0-1.30.90.7
Incentive Sensitization - Responses1.31.82.9-1.7-1.41.20.9
Incentive Sensitization - Breakpoint1.41.82.9-1.7-1.41.30.9
Sum of active levers in priming session hrs 5-60.70.72.2-0.60.2-0.3-1.5
Progressive ratio0.40.61.00.31.0-0.8-0.7
Food seeking constrained by brief footshock0.10.20.5-0.0-0.30.40.7
Seeking ratio, punishment vs. effort0.20.30.6-0.1-0.80.60.6
Retroperitoneal fat weight2.611.114.7-3.8-3.63.42.3
Reaction time number correct0.30.51.6-0.20.3-0.6-1.3
Reaction time mean minus median0.00.10.2-0.10.5-0.4-0.1
Reaction time mean minus median AUC0.10.40.60.60.8-0.7-0.1
Reaction time num false alarms0.60.91.10.91.0-1.0-0.8
Reaction time num false alarms AUC0.40.70.80.70.9-0.9-0.8
Reaction time trials correct on left0.30.51.6-0.20.3-0.6-1.3
Reaction time trials on left0.20.41.4-0.20.3-0.5-1.2
Reaction time mean0.20.40.80.70.2-0.20.9
Reaction time mean AUC0.30.51.20.80.2-0.11.1
Median of all reaction times0.30.51.20.80.0-0.01.1
Reaction time omissions0.40.50.8-0.8-0.60.60.9
Reaction time false alarm rate0.50.71.01.00.9-0.8-0.3
Reaction time premature initiation rate1.01.41.6-1.2-1.21.31.0
Reaction time premature initiations0.61.12.1-1.4-1.11.10.4
Std. dev. reaction times0.10.20.40.30.4-0.30.6
Reaction time trials completed0.20.41.4-0.20.3-0.5-1.2
Reaction time trials AUC0.20.31.1-0.40.1-0.3-1.0
Run reversals in cocaine runway, females1.11.12.0-1.4-1.01.00.5
Run reversals in cocaine runway, males0.10.10.2-0.1-0.40.4-0.1
Latency to leave start box in cocaine runway1.41.62.1-1.4-1.31.20.9
Latency to leave start box in cocaine runway, F0.20.20.4-0.3-0.50.40.6
Latency to leave start box in cocaine runway, M4.34.05.6-2.4-2.12.11.3
Std. dev. time between licks in bursts1.31.72.01.41.2-1.2-1.3
Total sessions with >9 infusions0.10.10.30.30.2-0.3-0.5
Short access day 1 total inactive lever presses0.20.20.3-0.5-0.60.50.3
Short access day 10 total inactive lever presses0.10.20.4-0.4-0.60.40.4
Short access day 1 total infusions0.30.40.60.60.5-0.6-0.8
Short access day 10 total infusions0.00.10.10.4-0.1-0.20.0
Short access total infusions0.91.21.61.20.9-1.2-1.0
Short access day 1 locomotion0.10.20.40.60.4-0.4-0.3
Short access day 10 total locomotion0.51.02.31.50.8-0.9-0.2
Short access total locomotion0.80.91.31.20.8-1.0-0.8
One hour access (0.3 mA shock)0.30.30.8-0.40.5-0.3-0.9
Compulsive drug intake0.20.20.50.10.4-0.3-0.7
One hour access (shock baseline)0.30.40.6-0.8-0.60.50.5
Social response proportion0.80.91.40.81.2-1.1-0.5
Social responses1.41.82.80.91.7-1.6-1.0
Social time1.31.84.10.01.3-1.2-2.0
Soleus weight0.51.52.4-1.6-1.21.20.9
Bone: stiffness0.00.00.00.00.10.10.2
Tibialis anterior weight0.20.71.2-0.7-1.10.80.8
Time to tail flick, vehicle, before self-admin0.30.30.80.00.2-0.9-0.5
Time to tail flick, vehicle, after self-admin1.72.33.31.61.8-1.7-0.5
Time to tail flick, test, before self-admin3.94.06.41.12.0-2.1-2.5
Time to tail flick, test, after self-admin1.41.42.20.91.5-1.3-1.0
Delta time to tail flick, vehicle, before/after SA0.80.71.40.91.2-0.7-0.3
Delta time to tail flick, test, before/after SA1.11.23.5-0.2-0.60.81.9
Tibia length2.77.510.1-3.2-2.82.91.9
Ambulatory time before self-admin0.10.20.6-0.00.2-0.2-0.7
Ambulatory time after self-admin1.82.12.9-1.5-1.51.70.9
Bone: tissue strength0.10.10.2-0.10.4-0.2-0.3
Total heroin consumption0.20.20.3-0.6-0.60.30.3
Bone: trabecular number0.40.71.01.00.9-1.0-0.1
Bone: trabecular spacing0.40.51.0-1.0-0.70.8-0.2
Bone: trabecular thickness0.91.22.01.41.2-1.1-0.3
Bone: trabecular tissue density0.50.82.9-0.00.2-0.3-1.7
Water consumed over 24 hours2.73.65.5-2.3-1.81.91.3
Number of responses in last shaping day0.00.00.1-0.3-0.10.1-0.1