Ppme1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL mRNA stability Ppme1 0.07 0.05 4.3e-06 0.05 0.04 0.05 0.04 3.7e-06 1.7e-05 6.7e-06 1.4e-05
2 Brain mRNA stability Ppme1 0.29 0.15 0.0e+00 0.21 0.24 0.24 0.24 4.8e-19 1.5e-22 4.2e-22 2.8e-22
3 Liver gene expression Ppme1 0.03 0.03 8.2e-04 0.02 0.01 0.01 0.01 2.5e-03 3.0e-02 1.3e-02 2.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.2-0.40.1-0.4
Area under the delay curve0.10.10.1-0.10.30.3
BMI with tail0.10.20.50.00.20.7
BMI without tail0.51.11.61.3-0.21.2
Body weight0.41.53.01.20.01.7
Weight adjusted by age0.40.41.01.0-0.50.3
Bone surface0.71.31.61.3-1.2-0.9
Bone volume0.50.80.90.9-1.0-0.8
Breakpoint value in progressive ratio session0.20.20.4-0.60.4-0.1
Number of licking bursts5.66.67.9-2.32.82.6
Context. condit. distance diff. score2.83.44.01.5-2.0-2.0
Locomotion velocity, session 10.20.20.4-0.70.2-0.4
Locomotion distance, session 11.01.31.80.8-1.2-1.4
Locomotion velocity, session 20.00.10.10.3-0.3-0.1
Locomotion distance, session 20.50.70.90.7-0.9-0.9
Locomotion velocity, session 30.91.11.90.6-1.0-1.4
Locomotion distance, session 31.71.93.20.8-1.3-1.8
Stereotopy head waving bouts, day 30.50.61.1-0.40.71.0
Stereotopy head waving duration, day 30.10.10.20.1-0.3-0.4
Locomotion velocity, session 70.20.20.4-0.60.50.1
Locomotion distance, session 70.10.20.2-0.40.50.4
Stereotopy head waving bouts, day 72.93.33.81.6-1.9-1.9
Stereotopy head waving duration, day 73.44.14.82.0-2.2-1.9
Locomotion velocity, session 80.81.01.20.9-1.1-1.0
Locomotion distance, session 82.63.84.51.8-2.1-1.9
Degree of sensitization distance1.61.63.7-0.21.01.9
Degree of sensitization stereotypy6.47.08.12.4-2.8-2.7
Conditioned locomotion0.10.10.1-0.40.2-0.2
Cocaine response after cond. corrected2.42.73.6-1.31.71.9
Cocaine response after cond. not corrected0.70.81.0-0.70.91.0
Cocaine response before conditioning2.32.83.91.2-1.7-2.0
Saline control response1.82.33.81.9-1.6-0.7
Bone: connectivity density0.20.30.7-0.1-0.3-0.8
Bone: cortical apparent density2.33.03.6-1.51.81.9
Bone: cortical area0.30.40.70.9-0.6-0.1
Bone: cortical porosity1.21.42.10.7-1.2-1.5
Bone: cortical porosity1.11.22.00.6-1.1-1.4
Bone: cortical thickness0.10.20.3-0.60.40.2
Bone: cortical thickness0.20.20.50.2-0.5-0.7
Bone: cortical tissue density2.33.03.5-1.51.81.9
Condit. Reinf. active minus inactive responses0.20.20.40.6-0.30.3
Condit. Reinf. active-inactive response ratio0.40.51.01.0-0.60.2
Condit. Reinf. active responses0.00.00.10.20.00.3
Condit. Reinf. inactive responses0.00.00.1-0.30.2-0.0
Incentive salience index mean0.20.20.50.7-0.40.1
Condit. Reinf. lever presses0.10.10.20.5-0.3-0.1
Condit. Reinf. active minus inactive responses6.98.513.13.6-3.1-1.7
Condit. Reinf. active-inactive response ratio1.81.92.51.6-1.5-1.0
Condit. Reinf. active responses8.511.819.04.4-3.6-1.8
Condit. Reinf. inactive responses4.65.79.83.1-2.5-1.0
Condit. Reinf. lever presses17.824.131.95.6-5.3-3.5
Condit. Reinf. lever reinforcers received9.813.821.24.6-4.0-2.1
Conditioned reinforcement - actives3.53.54.01.6-2.0-2.0
Conditioned reinforcement - inactives0.30.30.8-0.20.40.9
Conditioned locomotion3.54.26.01.5-2.1-2.5
Patch foraging indifference point 0 sec4.26.78.12.7-2.8-2.2
Patch foraging indifference point AUC0.20.30.40.60.10.7
Delay disc. indifference point, 0s delay0.70.71.11.0-0.9-0.5
Delay disc. indifference point, 16s delay0.10.10.2-0.40.2-0.1
Delay disc. indifference point, 2s delay0.50.61.31.1-0.60.1
Delay disc. indifference point, 24s delay0.90.91.2-1.11.10.6
Delay disc. indifference point, 4s delay0.50.61.31.1-0.60.2
Delay disc. indifference point, 8s delay0.00.00.0-0.0-0.0-0.1
Indifference point function ln k1.82.54.70.7-1.5-2.2
Indifference point function log k1.82.54.70.7-1.5-2.2
Patch foraging total patch changes 0 sec3.35.36.32.5-2.5-1.9
Patch foraging total patch changes 12 sec1.01.32.81.7-1.0-0.2
Patch foraging total patch changes 18 sec2.22.84.62.1-1.7-0.9
Patch foraging total patch changes 24 sec0.81.02.01.4-1.00.0
Patch foraging total patch changes 6 sec0.71.01.11.0-1.0-1.0
Patch foraging time to switch 0 sec3.45.26.6-2.62.51.6
Patch foraging water rate 0 sec3.25.16.32.3-2.5-2.0
Patch foraging water rate 12 sec2.23.44.41.5-2.1-1.8
Patch foraging water rate 18 sec1.11.42.01.3-1.4-0.7
Patch foraging water rate 24 sec1.62.34.20.7-1.5-2.0
Patch foraging water rate 6 sec1.31.92.41.0-1.5-1.5
Seeking ratio, delayed vs. immediate footshock1.31.52.7-1.61.10.7
Distance traveled before self-admin1.41.42.0-1.21.41.0
Distance traveled after self-admin0.40.50.7-0.80.3-0.8
Extensor digitorum longus weight0.20.92.20.10.71.5
Bone: elastic displacement2.12.44.0-2.01.60.7
Bone: elastic work1.72.24.2-2.01.50.5
Bone: endosteal estimation1.02.14.42.1-1.4-0.0
Bone: endosteal perimeter1.42.95.52.4-1.7-0.5
Epididymis fat weight0.92.14.6-0.31.22.2
Delta time in closed arm before/after self-admin2.72.75.3-0.51.62.3
Delta time in open arm before/after self-admin3.93.74.62.1-2.1-1.5
Diff in mean of infusions in LGA sessions3.74.14.9-2.12.21.8
Delay discount exponential model param0.10.10.10.2-0.4-0.4
Extinction: sum of active levers before priming0.10.10.2-0.20.30.4
Active lever presses in extinction session 63.93.87.40.9-1.8-2.7
Bone: final force0.00.00.0-0.20.10.2
Bone: final moment0.00.00.00.1-0.10.0
Food consumed during 24 hour testing period4.45.36.12.1-2.5-2.4
Glucose0.10.10.20.1-0.2-0.4
Heart weight1.31.92.31.4-1.5-1.2
Delay discount hyperbolic model param0.10.10.1-0.1-0.2-0.4
Intermittent access intake day 1-15 change0.90.81.00.8-0.9-1.0
Intermittent access intake escalation1.11.11.40.8-1.0-1.2
Intermittent access intake escalation 20.20.20.20.5-0.4-0.3
Intermitt. access day 1 inactive lever presses0.40.51.0-0.30.61.0
Intermitt. access day 15 inactive lever presses0.20.20.20.3-0.5-0.5
Intermitt. access escalation Index0.40.40.60.4-0.6-0.7
Intermittent access day 1 total infusions1.21.42.01.4-1.4-0.6
Intermittent access day 15 total infusions2.02.22.81.5-1.7-1.4
Intermittent access terminal intake (last 3 days)1.71.92.31.5-1.5-1.1
Intermittent access total infusions1.21.42.01.4-1.3-0.6
Intermittent access day 1 locomotion0.10.10.20.3-0.4-0.4
Intermittent access day 15 total locomotion1.71.82.21.1-1.4-1.5
Intermittent access total locomotion0.80.91.11.0-1.0-0.7
Intermittent access standard deviation0.10.10.30.6-0.20.1
Left kidney weight0.61.73.82.0-1.00.4
Right kidney weight0.30.92.11.4-0.70.4
Cocaine induced anxiety2.32.73.4-1.81.81.2
Post-drug Anxiety1.31.41.5-1.21.21.2
Baseline Anxiety1.11.11.81.3-1.1-0.6
Tail length1.44.29.23.0-1.41.3
Length with tail0.62.23.71.9-0.51.7
Length without tail0.20.40.5-0.70.70.5
Times rat made contact with spout0.60.61.4-0.20.71.2
Lifetime Intake1.51.72.31.5-1.5-0.8
Liver weight, left1.01.73.6-0.41.11.9
Liver weight, right2.33.98.1-0.61.82.8
Locomotor activity0.71.11.40.9-1.0-1.2
Locomotor testing distance1.83.14.02.0-1.9-1.3
Locomotor testing rearing0.40.61.41.2-0.70.1
Locomotion in novel chamber1.41.84.00.6-1.0-2.0
Locomotion in novel chamber post-restriction2.63.13.91.4-1.9-2.0
Fecal boli incidents, locomotor time 11.31.42.40.7-1.2-1.5
Change in fecal boli incidents, locomotor task1.21.21.3-1.01.21.1
Time >=10cm from walls, locomotor time 12.32.32.91.2-1.6-1.7
Bouts of movement, locomotor time 10.30.30.50.4-0.5-0.7
Total resting periods, locomotor time 10.30.30.80.0-0.4-0.9
Rest time, locomotor task time 10.20.20.3-0.60.0-0.4
Distance moved, locomotor task time 10.30.30.50.7-0.00.6
Vertical activity count, locomotor time 10.30.30.50.7-0.40.4
Time >=10cm from walls, locomotor time 21.51.62.31.5-1.4-0.8
Bouts of movement, locomotor time 20.40.51.11.1-0.20.4
Total resting periods, locomotor time 20.30.30.40.60.10.7
Rest time, locomotor task time 23.64.15.6-2.42.11.5
Distance moved, locomotor task time 23.23.75.52.3-2.1-1.2
Vertical activity count, locomotor time 21.01.12.11.5-1.1-0.1
Light reinforcement 12.74.95.8-2.32.41.9
Light reinforcement 20.20.30.6-0.80.6-0.0
Bone: marrow area0.81.73.61.9-1.20.1
Bone: maximum diameter1.42.64.42.1-1.7-0.7
Bone: maximum force0.00.00.00.1-0.2-0.1
Bone: maximum moment0.10.10.20.4-0.4-0.2
Mean time between licks in bursts3.85.310.53.2-2.3-0.2
Mean num. licks in bursts4.55.46.52.2-2.6-2.2
Cd content in liver0.80.91.6-0.50.91.2
Co content in liver1.21.42.51.6-1.2-0.3
Cu content in liver0.60.81.71.3-0.80.2
Fe content in liver0.00.10.1-0.10.20.3
K content in liver0.30.30.6-0.30.50.8
Mg content in liver0.10.10.20.4-0.4-0.1
Mn content in liver1.21.32.6-1.61.10.1
Na content in liver0.30.30.40.5-0.6-0.5
Rb content in liver0.70.91.21.1-1.0-0.6
Se content in liver3.34.15.6-2.42.21.4
Sr content in liver0.10.10.3-0.3-0.1-0.5
Zn content in liver4.85.46.72.6-2.5-1.7
Bone: minimum diameter0.50.91.51.2-0.31.0
Time in familiar zone, hab. session 10.10.10.20.10.10.4
Time in novel zone, hab. session 10.30.30.3-0.50.60.4
Total zone transitions, hab. session 10.20.20.5-0.2-0.2-0.7
Total locomotion distance, hab. session 11.11.63.2-0.51.21.8
Locomotion velocity, hab. session 10.60.91.8-0.30.81.4
Time in familiar zone, hab. session 21.51.52.21.5-1.4-0.7
Time in novel zone, hab. session 20.30.30.6-0.80.60.1
Total zone transitions, hab. session 21.72.23.01.1-1.5-1.7
Total locomotion distance, hab. session 20.30.51.10.50.21.1
Locomotion velocity, hab. session 20.50.71.80.40.41.3
Novel to familiar place preference ratio0.10.10.10.2-0.3-0.3
Novelty place preference0.10.10.10.2-0.3-0.3
Time in novel zone, NPP test0.20.20.30.4-0.5-0.5
Total zone transitions, NPP test0.30.50.90.3-0.6-1.0
Total locomotion distance, NPP test0.70.92.0-0.20.81.4
Locomotion velocity, NPP test1.01.52.8-0.51.21.7
Intraocular pressure0.40.61.30.3-0.6-1.2
Delta distance traveled before/after self-admin1.71.92.41.0-1.5-1.5
Delta ambulatory time before/after self-admin1.92.13.11.0-1.5-1.8
Parametrial fat weight1.32.64.4-1.01.52.1
Pavlov. Cond. lever latency1.31.62.2-1.51.40.9
Pavlov. Cond. magazine entry latency2.93.85.12.3-2.1-1.3
Pavlov. Cond. change in total contacts1.41.52.11.5-1.4-0.8
Pavlov. Cond. index score2.93.75.32.3-2.1-1.2
Pavlov. Cond. latency score2.93.65.12.3-2.1-1.2
Pavlov. Cond. lever contacts1.21.42.31.5-1.3-0.6
Pavlov. Cond. magazine entry number3.54.45.5-2.32.31.5
Pavlov. Cond. intertrial magazine entries1.01.21.7-1.31.20.7
Pavlov. Cond. lever-magazine prob. diff.2.43.04.22.0-1.9-1.1
Pavlov. Cond. response bias1.21.42.21.5-1.3-0.6
Pavlov. Cond. lever latency18.424.831.2-5.65.43.8
Pavlov. Cond. magazine entry latency4.65.36.32.2-2.5-2.1
Pavlov. Cond. change in total contacts14.620.123.54.9-4.8-3.7
Pavlov. Cond. index score14.518.622.44.7-4.7-3.4
Pavlov. Cond. latency score13.116.319.24.4-4.4-3.2
Pavlov. Cond. lever contacts19.226.232.95.7-5.5-3.9
Pavlov. Cond. magazine entry number8.210.011.7-3.13.42.9
Pavlov. Cond. intertrial magazine entries0.40.61.40.50.21.2
Pavlov. Cond. lever-magazine prob. diff.13.517.121.24.6-4.5-3.2
Pavlov. Cond. response bias19.626.732.35.7-5.6-4.1
Time in closed arm before self-admin3.23.77.10.7-1.8-2.7
Time in closed arm after self-admin0.70.71.5-1.20.7-0.2
Time in open arm before self-admin5.05.46.8-2.12.62.2
Time in open arm after self-admin0.40.40.90.9-0.20.6
Bone: periosteal estimation0.91.83.51.9-1.3-0.1
Bone: periosteal perimeter1.11.83.41.8-1.4-0.5
Bone: post-yield work0.20.20.30.5-0.5-0.4
Progressive ratio test 1 active lever presses0.10.10.2-0.30.20.4
Progressive ratio test 1 breakpoint0.10.10.3-0.20.20.5
Progressive ratio test 1 inactive lever presses0.30.30.50.7-0.70.3
Progressive ratio test 2 active lever presses0.91.01.71.3-1.0-0.5
Progressive ratio test 2 breakpoint1.01.11.91.4-1.1-0.5
Progressive ratio test 2 inactive lever presses1.01.11.51.1-1.2-0.8
Incentive Sensitization - Responses2.22.23.51.9-1.5-0.9
Incentive Sensitization - Breakpoint2.12.13.11.8-1.5-1.0
Sum of active levers in priming session hrs 5-60.10.10.2-0.40.3-0.4
Progressive ratio0.10.10.30.0-0.2-0.5
Food seeking constrained by brief footshock0.70.91.91.4-0.8-0.1
Seeking ratio, punishment vs. effort0.50.61.41.2-0.60.5
Retroperitoneal fat weight4.715.530.7-1.73.65.5
Reaction time number correct0.60.82.0-0.5-0.4-1.4
Reaction time mean minus median0.50.71.21.1-0.9-0.3
Reaction time mean minus median AUC1.11.41.71.1-1.3-1.1
Reaction time num false alarms2.43.33.8-1.61.91.9
Reaction time num false alarms AUC1.21.71.9-1.21.41.2
Reaction time trials correct on left0.60.82.0-0.5-0.4-1.4
Reaction time trials on left0.60.82.0-0.5-0.3-1.4
Reaction time mean1.01.42.0-0.81.21.4
Reaction time mean AUC1.31.72.1-1.21.31.4
Median of all reaction times1.72.32.6-1.31.61.6
Reaction time omissions0.40.50.8-0.50.80.9
Reaction time false alarm rate1.72.43.6-1.01.61.9
Reaction time premature initiation rate1.21.63.61.9-1.00.6
Reaction time premature initiations0.91.32.31.5-1.2-0.4
Std. dev. reaction times0.30.40.60.8-0.10.8
Reaction time trials completed0.60.82.0-0.5-0.3-1.4
Reaction time trials AUC0.40.61.6-0.4-0.3-1.3
Run reversals in cocaine runway, females2.52.56.50.21.02.5
Run reversals in cocaine runway, males0.10.10.1-0.30.20.2
Latency to leave start box in cocaine runway3.74.05.4-1.62.02.3
Latency to leave start box in cocaine runway, F3.33.76.3-1.11.82.5
Latency to leave start box in cocaine runway, M0.40.30.8-0.90.50.0
Std. dev. time between licks in bursts1.11.33.01.7-0.80.6
Total sessions with >9 infusions2.83.14.41.6-2.1-1.5
Short access day 1 total inactive lever presses0.10.10.2-0.40.20.4
Short access day 10 total inactive lever presses0.10.10.2-0.40.3-0.1
Short access day 1 total infusions2.42.63.61.8-1.9-0.9
Short access day 10 total infusions1.41.62.71.7-1.3-0.4
Short access total infusions1.01.21.81.3-1.3-0.2
Short access day 1 locomotion2.22.33.01.1-1.7-1.7
Short access day 10 total locomotion0.30.40.60.8-0.6-0.4
Short access total locomotion0.10.20.20.4-0.5-0.3
One hour access (0.3 mA shock)2.42.83.82.0-1.8-1.2
Compulsive drug intake0.20.20.3-0.50.0-0.6
One hour access (shock baseline)1.92.23.41.8-1.5-0.9
Social response proportion0.50.50.9-0.40.61.0
Social responses0.81.02.4-0.10.71.5
Social time2.83.65.7-2.42.01.2
Soleus weight0.61.64.20.40.72.0
Bone: stiffness0.30.50.9-0.30.61.0
Tibialis anterior weight0.10.30.50.7-0.20.5
Time to tail flick, vehicle, before self-admin0.10.10.2-0.20.1-0.5
Time to tail flick, vehicle, after self-admin2.83.03.91.5-2.0-1.7
Time to tail flick, test, before self-admin0.40.40.80.9-0.50.3
Time to tail flick, test, after self-admin0.30.40.80.9-0.30.4
Delta time to tail flick, vehicle, before/after SA1.61.62.51.2-1.6-0.9
Delta time to tail flick, test, before/after SA0.30.30.3-0.50.60.4
Tibia length2.16.08.11.8-2.6-2.8
Ambulatory time before self-admin1.31.31.8-1.21.30.8
Ambulatory time after self-admin0.60.61.5-0.6-0.0-1.2
Bone: tissue strength0.50.50.7-0.80.1-0.9
Total heroin consumption0.30.40.70.3-0.7-0.8
Bone: trabecular number0.61.01.9-1.41.00.1
Bone: trabecular spacing0.81.11.41.0-1.2-0.9
Bone: trabecular thickness0.30.30.4-0.50.60.6
Bone: trabecular tissue density2.02.85.1-0.91.62.3
Water consumed over 24 hours0.50.60.9-0.90.90.3
Number of responses in last shaping day0.20.20.60.7-0.40.1