Pou5f1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Pou5f1 0.05 0.03 1.6e-04 0.01 0.03 0.03 0.02 1.8e-02 1.8e-04 7.2e-04 9.6e-04
2 NAcc gene expression Pou5f1 0.04 0.02 3.4e-03 0.02 0.02 0.02 0.01 8.3e-04 1.2e-03 1.3e-03 1.9e-03
3 Brain gene expression Pou5f1 0.08 0.05 1.5e-03 0.02 0.03 0.04 0.03 2.3e-03 7.9e-04 2.4e-04 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.61.1-0.60.7-1.0
Area under the delay curve0.81.01.9-0.2-1.4-1.0
BMI with tail1.24.37.2-2.7-2.3-0.5
BMI without tail2.26.611.7-2.8-3.4-0.1
Body weight1.77.516.8-2.4-4.10.4
Weight adjusted by age0.50.71.9-0.3-1.40.5
Bone surface0.10.20.40.3-0.2-0.6
Bone volume0.30.61.1-0.6-0.6-1.0
Breakpoint value in progressive ratio session0.30.30.40.60.60.5
Number of licking bursts0.91.53.61.90.8-0.5
Context. condit. distance diff. score5.97.211.43.03.4-0.9
Locomotion velocity, session 10.60.71.01.00.90.5
Locomotion distance, session 10.50.61.6-0.40.1-1.3
Locomotion velocity, session 20.30.40.50.70.4-0.7
Locomotion distance, session 20.30.40.70.30.5-0.8
Locomotion velocity, session 30.30.40.8-0.9-0.5-0.2
Locomotion distance, session 30.70.81.30.21.0-1.1
Stereotopy head waving bouts, day 30.30.40.50.7-0.7-0.0
Stereotopy head waving duration, day 30.30.40.60.3-0.70.8
Locomotion velocity, session 72.62.85.50.92.3-1.4
Locomotion distance, session 72.53.25.00.72.0-2.2
Stereotopy head waving bouts, day 71.11.32.9-0.3-1.7-0.9
Stereotopy head waving duration, day 70.91.12.9-0.5-1.7-0.5
Locomotion velocity, session 83.03.68.42.91.5-0.2
Locomotion distance, session 83.75.47.72.52.8-1.5
Degree of sensitization distance0.90.91.61.31.0-0.0
Degree of sensitization stereotypy0.91.01.5-0.3-1.2-1.2
Conditioned locomotion0.10.10.30.2-0.60.1
Cocaine response after cond. corrected0.91.02.40.50.7-1.6
Cocaine response after cond. not corrected0.30.40.90.90.2-0.5
Cocaine response before conditioning2.02.34.70.1-1.52.2
Saline control response3.44.66.2-2.5-2.11.7
Bone: connectivity density0.60.92.60.21.60.2
Bone: cortical apparent density1.01.43.3-1.8-1.0-0.1
Bone: cortical area0.71.01.9-0.4-1.4-1.0
Bone: cortical porosity0.50.50.9-0.1-0.8-1.0
Bone: cortical porosity0.20.20.20.5-0.4-0.4
Bone: cortical thickness3.96.57.6-2.6-2.8-2.3
Bone: cortical thickness2.22.55.4-2.3-1.5-0.2
Bone: cortical tissue density0.91.22.8-1.7-0.90.0
Condit. Reinf. active minus inactive responses0.40.51.10.41.10.4
Condit. Reinf. active-inactive response ratio0.20.20.3-0.6-0.20.5
Condit. Reinf. active responses0.60.81.30.21.11.0
Condit. Reinf. inactive responses0.40.41.0-0.31.00.5
Incentive salience index mean1.72.13.41.71.90.3
Condit. Reinf. lever presses3.24.67.02.62.60.3
Condit. Reinf. active minus inactive responses0.40.50.8-0.1-0.80.9
Condit. Reinf. active-inactive response ratio0.40.51.00.4-1.0-0.5
Condit. Reinf. active responses0.71.02.80.10.31.7
Condit. Reinf. inactive responses2.22.97.1-0.21.22.7
Condit. Reinf. lever presses1.21.63.60.41.01.9
Condit. Reinf. lever reinforcers received0.81.13.00.30.41.7
Conditioned reinforcement - actives1.93.36.1-1.1-1.7-2.5
Conditioned reinforcement - inactives2.23.25.4-1.1-1.7-2.3
Conditioned locomotion0.60.71.9-0.1-0.6-1.4
Patch foraging indifference point 0 sec1.63.04.0-2.0-1.02.0
Patch foraging indifference point AUC0.50.71.5-0.1-1.2-0.8
Delay disc. indifference point, 0s delay0.60.61.50.6-0.2-1.2
Delay disc. indifference point, 16s delay2.62.94.0-1.4-2.0-1.6
Delay disc. indifference point, 2s delay0.40.50.90.6-1.0-0.3
Delay disc. indifference point, 24s delay0.20.20.5-0.5-0.70.2
Delay disc. indifference point, 4s delay0.70.72.1-0.1-1.50.1
Delay disc. indifference point, 8s delay0.40.50.8-0.0-0.7-0.9
Indifference point function ln k0.61.11.91.21.40.0
Indifference point function log k0.61.11.91.21.40.0
Patch foraging total patch changes 0 sec1.73.34.8-2.2-1.21.9
Patch foraging total patch changes 12 sec1.52.03.0-1.7-1.50.9
Patch foraging total patch changes 18 sec1.92.86.3-2.5-1.01.1
Patch foraging total patch changes 24 sec0.81.43.7-1.9-0.7-0.3
Patch foraging total patch changes 6 sec2.13.34.8-2.2-1.71.5
Patch foraging time to switch 0 sec0.20.51.3-1.1-0.20.4
Patch foraging water rate 0 sec0.10.20.4-0.4-0.6-0.2
Patch foraging water rate 12 sec0.20.50.7-0.8-0.4-0.9
Patch foraging water rate 18 sec0.10.10.2-0.4-0.4-0.2
Patch foraging water rate 24 sec1.11.62.1-1.1-1.4-1.3
Patch foraging water rate 6 sec0.20.40.4-0.7-0.5-0.6
Seeking ratio, delayed vs. immediate footshock0.20.30.5-0.3-0.70.5
Distance traveled before self-admin0.10.10.20.5-0.2-0.1
Distance traveled after self-admin0.30.41.20.0-1.1-0.1
Extensor digitorum longus weight0.10.50.80.80.40.9
Bone: elastic displacement0.60.71.0-1.0-0.9-0.3
Bone: elastic work1.21.63.6-1.0-1.9-0.3
Bone: endosteal estimation2.04.38.82.0-0.23.0
Bone: endosteal perimeter2.24.67.92.81.42.0
Epididymis fat weight5.619.341.6-6.5-4.0-0.6
Delta time in closed arm before/after self-admin0.40.30.6-0.2-0.80.6
Delta time in open arm before/after self-admin0.20.20.4-0.60.0-0.6
Diff in mean of infusions in LGA sessions1.51.83.01.01.7-1.1
Delay discount exponential model param0.80.81.80.21.40.8
Extinction: sum of active levers before priming0.50.51.31.10.5-0.3
Active lever presses in extinction session 60.20.20.5-0.7-0.4-0.2
Bone: final force3.15.09.9-2.2-3.1-0.7
Bone: final moment2.74.38.4-2.0-2.9-0.6
Food consumed during 24 hour testing period0.10.10.10.3-0.20.4
Glucose4.16.512.43.52.60.5
Heart weight0.81.22.9-0.4-1.70.7
Delay discount hyperbolic model param0.70.81.90.21.40.7
Intermittent access intake day 1-15 change0.10.10.2-0.10.30.5
Intermittent access intake escalation0.20.30.8-0.9-0.20.4
Intermittent access intake escalation 20.50.51.00.40.71.0
Intermitt. access day 1 inactive lever presses0.30.92.01.4-0.2-0.9
Intermitt. access day 15 inactive lever presses0.20.40.8-0.3-0.90.5
Intermitt. access escalation Index1.62.24.11.52.0-0.6
Intermittent access day 1 total infusions1.32.15.9-0.4-0.3-2.4
Intermittent access day 15 total infusions0.81.22.2-1.0-0.5-1.5
Intermittent access terminal intake (last 3 days)1.01.42.3-1.0-1.0-1.5
Intermittent access total infusions1.61.94.6-0.8-0.7-2.2
Intermittent access day 1 locomotion0.30.41.1-0.40.0-1.1
Intermittent access day 15 total locomotion0.91.62.4-0.7-1.3-1.6
Intermittent access total locomotion1.21.42.4-0.9-1.0-1.5
Intermittent access standard deviation1.42.85.0-1.9-2.2-0.1
Left kidney weight1.98.817.0-3.0-4.10.8
Right kidney weight2.09.018.0-2.7-4.21.2
Cocaine induced anxiety0.71.01.61.21.3-0.2
Post-drug Anxiety1.11.21.60.71.31.2
Baseline Anxiety1.01.23.3-0.30.41.8
Tail length0.62.44.90.5-2.21.4
Length with tail0.73.26.70.3-2.61.7
Length without tail0.92.86.5-0.4-2.61.3
Times rat made contact with spout0.50.51.4-1.20.20.4
Lifetime Intake2.02.45.5-0.8-1.0-2.3
Liver weight, left0.91.52.71.60.41.3
Liver weight, right0.61.12.31.5-0.50.8
Locomotor activity1.72.77.00.90.42.6
Locomotor testing distance0.81.53.60.80.61.9
Locomotor testing rearing0.71.44.10.30.32.0
Locomotion in novel chamber0.30.40.8-0.4-0.9-0.5
Locomotion in novel chamber post-restriction0.71.11.6-1.1-1.30.8
Fecal boli incidents, locomotor time 10.20.30.5-0.10.50.7
Change in fecal boli incidents, locomotor task1.31.22.70.8-0.6-1.6
Time >=10cm from walls, locomotor time 10.40.40.60.7-0.30.8
Bouts of movement, locomotor time 11.31.52.90.81.71.0
Total resting periods, locomotor time 10.80.91.50.81.20.8
Rest time, locomotor task time 10.40.51.10.6-0.11.0
Distance moved, locomotor task time 10.60.91.5-0.7-1.2-0.9
Vertical activity count, locomotor time 10.20.40.8-0.9-0.50.2
Time >=10cm from walls, locomotor time 20.71.02.20.80.21.5
Bouts of movement, locomotor time 20.40.71.50.50.51.2
Total resting periods, locomotor time 20.71.21.81.00.81.4
Rest time, locomotor task time 21.92.43.81.91.41.2
Distance moved, locomotor task time 21.41.72.7-1.6-1.4-0.6
Vertical activity count, locomotor time 20.20.30.7-0.8-0.40.3
Light reinforcement 10.10.30.5-0.7-0.5-0.4
Light reinforcement 20.00.00.1-0.0-0.4-0.1
Bone: marrow area2.24.810.51.9-0.23.2
Bone: maximum diameter0.71.44.02.00.4-0.1
Bone: maximum force2.03.67.7-1.7-2.8-0.5
Bone: maximum moment1.62.96.2-1.5-2.5-0.4
Mean time between licks in bursts1.02.55.42.31.5-0.3
Mean num. licks in bursts1.42.35.6-2.4-0.60.9
Cd content in liver0.20.30.7-0.8-0.20.3
Co content in liver1.51.72.4-1.5-1.60.5
Cu content in liver0.40.50.8-0.90.7-0.5
Fe content in liver0.91.12.4-1.5-1.00.0
K content in liver0.70.71.9-0.00.3-1.4
Mg content in liver1.91.93.31.81.3-0.8
Mn content in liver4.65.17.32.72.51.3
Na content in liver1.31.42.5-0.7-1.0-1.6
Rb content in liver0.50.61.60.41.30.3
Se content in liver2.42.86.02.51.50.4
Sr content in liver0.30.30.70.1-0.30.8
Zn content in liver0.20.20.20.50.40.3
Bone: minimum diameter1.01.93.41.80.41.4
Time in familiar zone, hab. session 10.90.91.2-1.10.80.9
Time in novel zone, hab. session 10.30.30.90.9-0.40.1
Total zone transitions, hab. session 10.20.30.60.50.80.2
Total locomotion distance, hab. session 10.10.20.30.30.5-0.5
Locomotion velocity, hab. session 10.10.10.40.10.1-0.6
Time in familiar zone, hab. session 20.50.61.0-0.8-0.01.0
Time in novel zone, hab. session 20.10.10.20.1-0.3-0.5
Total zone transitions, hab. session 20.00.00.1-0.1-0.2-0.3
Total locomotion distance, hab. session 20.20.30.50.30.7-0.5
Locomotion velocity, hab. session 20.40.50.70.60.8-0.7
Novel to familiar place preference ratio0.40.51.3-0.1-0.4-1.1
Novelty place preference0.40.41.0-0.0-0.5-1.0
Time in novel zone, NPP test0.30.30.7-0.0-0.6-0.8
Total zone transitions, NPP test0.50.71.40.71.2-0.4
Total locomotion distance, NPP test0.40.51.10.10.7-1.0
Locomotion velocity, NPP test0.60.91.50.31.0-1.2
Intraocular pressure0.30.40.7-0.50.90.6
Delta distance traveled before/after self-admin1.01.02.3-0.7-1.5-0.6
Delta ambulatory time before/after self-admin0.30.41.0-0.2-1.0-0.3
Parametrial fat weight0.92.24.0-2.0-1.6-0.5
Pavlov. Cond. lever latency2.93.77.4-2.7-1.70.8
Pavlov. Cond. magazine entry latency2.63.45.72.42.10.3
Pavlov. Cond. change in total contacts0.60.71.81.30.2-0.5
Pavlov. Cond. index score3.64.58.52.92.2-0.3
Pavlov. Cond. latency score3.34.28.52.91.9-0.5
Pavlov. Cond. lever contacts2.73.26.92.61.5-0.6
Pavlov. Cond. magazine entry number2.93.65.1-2.1-2.2-1.1
Pavlov. Cond. intertrial magazine entries0.91.03.0-1.7-0.40.1
Pavlov. Cond. lever-magazine prob. diff.3.64.48.12.82.3-0.3
Pavlov. Cond. response bias3.34.16.72.62.30.3
Pavlov. Cond. lever latency0.40.51.10.5-0.4-1.1
Pavlov. Cond. magazine entry latency0.20.30.60.3-0.3-0.8
Pavlov. Cond. change in total contacts0.10.10.2-0.4-0.5-0.1
Pavlov. Cond. index score0.00.10.20.10.10.4
Pavlov. Cond. latency score0.10.10.2-0.2-0.10.5
Pavlov. Cond. lever contacts0.30.40.8-0.50.30.9
Pavlov. Cond. magazine entry number0.20.20.50.10.40.7
Pavlov. Cond. intertrial magazine entries1.42.22.71.71.61.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.00.20.5
Pavlov. Cond. response bias0.10.10.30.20.50.2
Time in closed arm before self-admin0.10.10.20.40.30.4
Time in closed arm after self-admin0.70.81.9-0.6-1.40.0
Time in open arm before self-admin0.50.61.10.81.00.3
Time in open arm after self-admin0.60.61.60.41.3-0.2
Bone: periosteal estimation0.71.42.40.9-1.01.6
Bone: periosteal perimeter0.40.61.81.3-0.10.3
Bone: post-yield work2.23.34.71.71.52.2
Progressive ratio test 1 active lever presses1.21.53.9-0.4-0.6-2.0
Progressive ratio test 1 breakpoint1.21.53.8-0.4-0.7-1.9
Progressive ratio test 1 inactive lever presses1.01.42.3-1.1-0.8-1.5
Progressive ratio test 2 active lever presses1.11.33.7-0.4-0.3-1.9
Progressive ratio test 2 breakpoint1.31.43.9-0.6-0.3-2.0
Progressive ratio test 2 inactive lever presses1.22.04.80.2-1.1-2.2
Incentive Sensitization - Responses0.10.10.30.20.2-0.5
Incentive Sensitization - Breakpoint0.10.10.40.10.2-0.6
Sum of active levers in priming session hrs 5-60.90.81.90.60.41.4
Progressive ratio3.35.210.6-2.1-3.30.8
Food seeking constrained by brief footshock0.10.10.2-0.30.10.4
Seeking ratio, punishment vs. effort2.73.97.81.92.8-0.6
Retroperitoneal fat weight0.31.41.7-1.3-1.2-1.1
Reaction time number correct0.81.53.2-1.8-1.00.5
Reaction time mean minus median0.92.33.61.91.80.1
Reaction time mean minus median AUC0.81.92.91.71.7-0.4
Reaction time num false alarms0.30.40.80.6-0.3-0.9
Reaction time num false alarms AUC0.40.71.20.7-0.6-1.1
Reaction time trials correct on left0.81.53.2-1.8-1.00.5
Reaction time trials on left0.81.43.0-1.7-1.00.5
Reaction time mean2.13.45.62.42.1-0.5
Reaction time mean AUC2.03.25.22.32.1-0.3
Median of all reaction times1.62.33.92.01.7-0.4
Reaction time omissions1.52.23.61.91.6-0.6
Reaction time false alarm rate1.11.63.11.80.1-1.2
Reaction time premature initiation rate0.81.12.8-0.6-1.7-0.1
Reaction time premature initiations1.42.54.9-1.6-2.20.2
Std. dev. reaction times1.62.95.52.41.7-0.5
Reaction time trials completed0.81.43.0-1.7-1.00.5
Reaction time trials AUC0.71.32.9-1.7-0.90.5
Run reversals in cocaine runway, females0.60.60.9-1.0-0.9-0.2
Run reversals in cocaine runway, males0.40.40.80.9-0.2-0.6
Latency to leave start box in cocaine runway0.30.41.01.00.4-0.1
Latency to leave start box in cocaine runway, F0.60.70.91.00.90.6
Latency to leave start box in cocaine runway, M0.60.60.80.1-0.9-0.9
Std. dev. time between licks in bursts1.92.66.52.61.10.3
Total sessions with >9 infusions1.62.03.9-0.7-1.3-2.0
Short access day 1 total inactive lever presses1.01.32.60.4-1.1-1.6
Short access day 10 total inactive lever presses0.30.61.50.60.3-1.2
Short access day 1 total infusions0.20.30.60.0-0.5-0.8
Short access day 10 total infusions1.82.34.8-0.8-1.1-2.2
Short access total infusions2.02.65.3-0.7-1.4-2.3
Short access day 1 locomotion1.11.43.20.70.6-1.8
Short access day 10 total locomotion0.20.30.60.8-0.40.4
Short access total locomotion0.70.82.00.5-0.4-1.4
One hour access (0.3 mA shock)0.80.91.90.60.6-1.4
Compulsive drug intake2.93.56.02.42.1-0.4
One hour access (shock baseline)0.81.12.2-1.5-0.9-0.6
Social response proportion0.60.61.30.70.11.2
Social responses0.10.10.20.4-0.40.4
Social time1.62.15.52.30.9-0.4
Soleus weight1.44.011.13.30.90.3
Bone: stiffness0.71.11.7-1.3-1.2-0.3
Tibialis anterior weight0.31.22.6-1.6-0.9-0.1
Time to tail flick, vehicle, before self-admin0.60.61.40.51.20.5
Time to tail flick, vehicle, after self-admin0.60.81.41.20.90.3
Time to tail flick, test, before self-admin0.10.10.2-0.20.30.4
Time to tail flick, test, after self-admin0.70.81.40.21.20.9
Delta time to tail flick, vehicle, before/after SA0.40.31.0-0.1-0.2-1.0
Delta time to tail flick, test, before/after SA0.10.10.2-0.30.50.2
Tibia length0.51.32.10.7-1.21.4
Ambulatory time before self-admin0.10.10.20.1-0.4-0.2
Ambulatory time after self-admin0.50.61.6-0.1-1.30.5
Bone: tissue strength2.32.34.7-1.2-2.2-0.8
Total heroin consumption0.10.10.30.4-0.00.5
Bone: trabecular number0.71.22.5-0.80.6-1.6
Bone: trabecular spacing0.70.92.60.3-1.60.3
Bone: trabecular thickness0.40.50.6-0.70.8-0.7
Bone: trabecular tissue density0.60.92.0-0.4-1.4-0.7
Water consumed over 24 hours0.10.10.30.50.10.1
Number of responses in last shaping day0.60.71.21.1-0.5-0.8