Polg2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Polg2 0.13 0.1 4.7e-03 0.03 0.04 0.03 0.04 1.6e-02 9.3e-03 2.2e-02 1.1e-02
2 PL gene expression Polg2 0.04 0.02 6.1e-05 0.04 0.04 0.03 0.04 5.3e-05 3.6e-05 8.0e-04 7.4e-05
3 Adipose gene expression Polg2 0.03 0.02 4.4e-03 0.01 0.01 0 0.01 1.0e-02 1.3e-02 2.6e-01 3.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.62.4-1.1-1.11.5
Area under the delay curve0.10.10.20.1-0.4-0.0
BMI with tail1.44.48.0-2.8-2.10.8
BMI without tail5.310.916.3-4.0-3.52.0
Body weight4.217.622.6-4.8-4.23.6
Weight adjusted by age1.01.11.41.10.7-1.2
Bone surface4.68.012.2-2.5-2.43.5
Bone volume4.27.19.8-2.4-2.33.1
Breakpoint value in progressive ratio session0.20.30.5-0.7-0.50.3
Number of licking bursts0.10.10.10.20.4-0.1
Context. condit. distance diff. score0.00.00.1-0.3-0.0-0.1
Locomotion velocity, session 10.91.01.4-1.2-0.90.9
Locomotion distance, session 11.01.22.3-1.5-1.00.7
Locomotion velocity, session 20.50.61.3-1.1-0.30.7
Locomotion distance, session 20.40.51.4-1.2-0.30.1
Locomotion velocity, session 30.30.40.6-0.80.3-0.7
Locomotion distance, session 30.10.10.3-0.50.10.1
Stereotopy head waving bouts, day 30.40.50.70.70.6-0.9
Stereotopy head waving duration, day 30.40.50.90.60.5-0.9
Locomotion velocity, session 70.10.10.30.30.5-0.2
Locomotion distance, session 70.00.00.1-0.1-0.2-0.0
Stereotopy head waving bouts, day 70.70.81.40.20.9-1.2
Stereotopy head waving duration, day 73.13.74.51.52.1-2.1
Locomotion velocity, session 80.50.61.2-0.6-0.51.1
Locomotion distance, session 80.30.41.0-1.0-0.50.3
Degree of sensitization distance0.20.20.50.1-0.70.4
Degree of sensitization stereotypy1.11.32.10.01.3-1.5
Conditioned locomotion0.20.30.7-0.2-0.80.3
Cocaine response after cond. corrected1.41.62.71.71.1-0.9
Cocaine response after cond. not corrected2.73.03.61.91.9-1.3
Cocaine response before conditioning0.30.40.7-0.20.8-0.6
Saline control response1.51.92.7-1.7-1.60.6
Bone: connectivity density1.52.43.5-1.3-1.31.9
Bone: cortical apparent density1.21.63.10.71.1-1.7
Bone: cortical area5.48.213.7-3.7-2.42.2
Bone: cortical porosity3.03.34.7-2.2-1.41.9
Bone: cortical porosity2.72.95.2-2.3-1.21.4
Bone: cortical thickness1.01.72.6-1.40.7-1.6
Bone: cortical thickness1.01.21.8-0.91.0-1.3
Bone: cortical tissue density1.31.73.10.81.2-1.8
Condit. Reinf. active minus inactive responses1.82.02.9-1.7-1.50.9
Condit. Reinf. active-inactive response ratio0.20.30.4-0.6-0.60.3
Condit. Reinf. active responses2.73.34.0-2.0-1.91.4
Condit. Reinf. inactive responses1.72.02.2-1.4-1.51.4
Incentive salience index mean1.41.72.7-1.6-1.20.9
Condit. Reinf. lever presses0.10.10.3-0.5-0.0-0.1
Condit. Reinf. active minus inactive responses5.06.29.3-3.1-2.32.0
Condit. Reinf. active-inactive response ratio0.80.91.1-1.1-0.90.8
Condit. Reinf. active responses7.09.712.8-3.6-3.12.6
Condit. Reinf. inactive responses6.07.410.4-3.2-2.72.1
Condit. Reinf. lever presses3.14.38.1-2.8-1.81.3
Condit. Reinf. lever reinforcers received5.88.210.6-3.3-2.92.4
Conditioned reinforcement - actives0.40.40.6-0.7-0.80.4
Conditioned reinforcement - inactives3.74.14.7-2.1-1.82.2
Conditioned locomotion2.93.54.0-1.9-2.01.7
Patch foraging indifference point 0 sec7.512.114.7-3.8-3.62.9
Patch foraging indifference point AUC2.73.13.2-1.8-1.81.8
Delay disc. indifference point, 0s delay0.90.91.51.20.8-0.8
Delay disc. indifference point, 16s delay0.20.20.6-0.3-0.8-0.1
Delay disc. indifference point, 2s delay0.30.30.50.0-0.70.7
Delay disc. indifference point, 24s delay3.23.14.4-1.9-2.11.2
Delay disc. indifference point, 4s delay1.11.11.21.11.1-1.1
Delay disc. indifference point, 8s delay0.10.10.20.40.0-0.5
Indifference point function ln k0.40.51.10.00.6-1.1
Indifference point function log k0.40.51.10.00.6-1.1
Patch foraging total patch changes 0 sec7.311.813.8-3.7-3.62.9
Patch foraging total patch changes 12 sec7.19.110.4-2.7-3.23.1
Patch foraging total patch changes 18 sec4.96.37.8-2.8-2.52.2
Patch foraging total patch changes 24 sec7.69.311.5-3.4-3.22.6
Patch foraging total patch changes 6 sec5.48.19.5-3.1-2.72.7
Patch foraging time to switch 0 sec0.81.31.91.41.2-0.8
Patch foraging water rate 0 sec3.65.87.2-2.7-2.52.1
Patch foraging water rate 12 sec0.20.30.5-0.40.6-0.7
Patch foraging water rate 18 sec0.20.20.7-0.80.0-0.1
Patch foraging water rate 24 sec0.10.10.10.00.4-0.4
Patch foraging water rate 6 sec0.10.10.2-0.5-0.1-0.3
Seeking ratio, delayed vs. immediate footshock0.30.30.5-0.7-0.70.1
Distance traveled before self-admin1.61.72.01.31.4-1.2
Distance traveled after self-admin0.50.60.90.40.9-0.8
Extensor digitorum longus weight0.93.77.62.80.9-1.6
Bone: elastic displacement1.01.21.80.21.3-1.3
Bone: elastic work0.70.82.0-1.4-0.40.7
Bone: endosteal estimation10.823.633.0-4.0-4.65.7
Bone: endosteal perimeter13.026.936.2-4.4-5.06.0
Epididymis fat weight1.53.44.9-1.3-2.22.0
Delta time in closed arm before/after self-admin0.10.10.20.20.50.2
Delta time in open arm before/after self-admin0.50.50.80.70.1-0.9
Diff in mean of infusions in LGA sessions0.50.51.10.20.7-1.0
Delay discount exponential model param0.10.10.30.00.5-0.2
Extinction: sum of active levers before priming0.30.30.5-0.4-0.70.3
Active lever presses in extinction session 61.71.61.8-1.3-1.31.2
Bone: final force2.43.96.1-2.5-1.41.9
Bone: final moment2.54.06.3-2.5-1.41.9
Food consumed during 24 hour testing period3.84.65.5-2.1-2.32.0
Glucose1.01.51.71.11.3-1.3
Heart weight0.10.10.3-0.3-0.1-0.6
Delay discount hyperbolic model param0.10.10.2-0.10.5-0.1
Intermittent access intake day 1-15 change0.30.30.60.80.20.2
Intermittent access intake escalation0.40.40.80.90.5-0.1
Intermittent access intake escalation 20.30.30.70.4-0.20.9
Intermitt. access day 1 inactive lever presses6.06.48.9-3.0-2.32.3
Intermitt. access day 15 inactive lever presses2.02.22.6-1.4-1.61.4
Intermitt. access escalation Index5.34.75.42.22.3-2.0
Intermittent access day 1 total infusions1.82.03.2-1.8-1.40.9
Intermittent access day 15 total infusions0.40.40.6-0.6-0.80.6
Intermittent access terminal intake (last 3 days)2.42.73.3-1.3-1.71.8
Intermittent access total infusions4.04.55.2-2.3-2.11.9
Intermittent access day 1 locomotion5.35.67.3-2.7-2.42.0
Intermittent access day 15 total locomotion6.46.97.4-2.7-2.62.6
Intermittent access total locomotion12.113.816.6-4.1-3.73.4
Intermittent access standard deviation2.02.12.5-1.6-1.51.3
Left kidney weight0.41.12.2-1.50.2-1.1
Right kidney weight0.30.71.7-1.30.2-0.7
Cocaine induced anxiety0.10.20.30.10.4-0.6
Post-drug Anxiety0.80.81.01.00.8-1.0
Baseline Anxiety1.01.11.21.10.9-1.1
Tail length2.36.87.5-2.5-2.72.6
Length with tail1.86.69.3-2.2-2.33.0
Length without tail0.20.41.10.2-0.01.0
Times rat made contact with spout0.60.70.9-0.8-0.80.9
Lifetime Intake5.76.58.7-2.9-2.52.1
Liver weight, left0.50.81.4-0.6-0.71.2
Liver weight, right0.00.00.1-0.3-0.00.2
Locomotor activity2.64.210.3-3.2-1.30.7
Locomotor testing distance3.25.411.9-3.5-1.90.7
Locomotor testing rearing1.52.35.1-2.3-1.10.7
Locomotion in novel chamber0.10.20.40.30.6-0.1
Locomotion in novel chamber post-restriction1.41.73.3-0.6-1.31.8
Fecal boli incidents, locomotor time 10.60.61.41.20.4-0.5
Change in fecal boli incidents, locomotor task0.10.10.2-0.2-0.40.2
Time >=10cm from walls, locomotor time 11.92.03.31.11.8-1.2
Bouts of movement, locomotor time 10.10.10.20.40.2-0.3
Total resting periods, locomotor time 10.20.20.50.70.3-0.3
Rest time, locomotor task time 11.11.22.51.60.8-0.7
Distance moved, locomotor task time 11.21.31.7-1.3-1.11.0
Vertical activity count, locomotor time 10.60.60.9-1.0-0.60.7
Time >=10cm from walls, locomotor time 20.60.71.40.81.2-0.3
Bouts of movement, locomotor time 20.10.10.20.30.0-0.4
Total resting periods, locomotor time 20.30.30.50.50.3-0.7
Rest time, locomotor task time 26.37.210.73.32.3-2.4
Distance moved, locomotor task time 21.01.21.9-1.4-0.71.1
Vertical activity count, locomotor time 23.94.26.2-2.5-1.81.8
Light reinforcement 11.01.82.9-1.7-1.60.2
Light reinforcement 20.91.22.1-1.1-1.50.6
Bone: marrow area10.422.431.8-3.9-4.55.6
Bone: maximum diameter5.610.311.5-3.3-3.03.4
Bone: maximum force4.78.111.4-3.4-2.52.5
Bone: maximum moment4.78.111.2-3.4-2.52.6
Mean time between licks in bursts0.20.20.3-0.1-0.60.5
Mean num. licks in bursts0.50.61.0-0.7-1.00.6
Cd content in liver4.95.47.62.82.1-2.0
Co content in liver1.01.21.81.41.2-0.7
Cu content in liver0.10.10.10.3-0.40.2
Fe content in liver0.10.10.2-0.30.2-0.5
K content in liver0.40.41.0-0.2-0.41.0
Mg content in liver0.40.40.90.90.20.5
Mn content in liver0.00.10.1-0.30.00.2
Na content in liver0.10.10.3-0.5-0.20.2
Rb content in liver2.02.53.51.51.9-1.3
Se content in liver1.11.31.71.11.0-1.3
Sr content in liver0.70.61.0-1.0-0.60.7
Zn content in liver0.00.00.0-0.0-0.00.2
Bone: minimum diameter13.525.328.8-4.8-4.95.4
Time in familiar zone, hab. session 10.50.50.80.1-0.70.9
Time in novel zone, hab. session 10.50.50.8-0.10.8-0.9
Total zone transitions, hab. session 11.21.73.6-1.9-1.00.7
Total locomotion distance, hab. session 13.14.48.2-2.9-1.61.5
Locomotion velocity, hab. session 12.94.17.0-2.7-1.71.5
Time in familiar zone, hab. session 21.01.11.5-0.9-1.01.2
Time in novel zone, hab. session 20.60.60.70.70.8-0.7
Total zone transitions, hab. session 20.60.81.7-1.3-0.60.5
Total locomotion distance, hab. session 21.92.63.6-1.9-1.61.3
Locomotion velocity, hab. session 21.72.33.0-1.7-1.51.2
Novel to familiar place preference ratio0.91.01.3-1.0-0.81.1
Novelty place preference0.50.50.7-0.8-0.60.8
Time in novel zone, NPP test0.40.50.7-0.8-0.40.7
Total zone transitions, NPP test1.11.53.6-1.9-0.90.3
Total locomotion distance, NPP test2.12.84.6-2.1-1.51.3
Locomotion velocity, NPP test1.92.74.2-2.1-1.71.1
Intraocular pressure1.01.42.6-1.3-1.60.2
Delta distance traveled before/after self-admin0.20.20.7-0.80.0-0.2
Delta ambulatory time before/after self-admin0.30.30.6-0.8-0.40.3
Parametrial fat weight0.51.02.30.1-0.91.5
Pavlov. Cond. lever latency2.02.55.32.31.2-0.9
Pavlov. Cond. magazine entry latency2.83.75.4-2.3-1.71.6
Pavlov. Cond. change in total contacts2.72.95.1-2.3-1.41.2
Pavlov. Cond. index score3.03.86.4-2.5-1.71.5
Pavlov. Cond. latency score2.73.46.3-2.5-1.51.3
Pavlov. Cond. lever contacts1.21.43.0-1.7-0.80.7
Pavlov. Cond. magazine entry number1.92.33.61.91.4-1.2
Pavlov. Cond. intertrial magazine entries2.63.14.5-1.9-2.11.2
Pavlov. Cond. lever-magazine prob. diff.2.73.45.9-2.4-1.51.3
Pavlov. Cond. response bias2.22.74.8-2.2-1.41.2
Pavlov. Cond. lever latency0.40.51.31.10.5-0.3
Pavlov. Cond. magazine entry latency3.03.44.41.72.1-1.7
Pavlov. Cond. change in total contacts0.20.20.5-0.7-0.40.3
Pavlov. Cond. index score0.10.10.2-0.20.4-0.4
Pavlov. Cond. latency score0.20.30.4-0.10.7-0.6
Pavlov. Cond. lever contacts0.50.71.5-1.2-0.70.3
Pavlov. Cond. magazine entry number3.64.45.7-1.7-2.42.1
Pavlov. Cond. intertrial magazine entries13.717.821.4-3.3-4.64.6
Pavlov. Cond. lever-magazine prob. diff.0.10.20.3-0.00.6-0.5
Pavlov. Cond. response bias0.10.10.3-0.6-0.1-0.0
Time in closed arm before self-admin0.50.50.6-0.60.8-0.8
Time in closed arm after self-admin0.70.71.90.41.4-0.3
Time in open arm before self-admin1.31.41.81.31.2-0.9
Time in open arm after self-admin0.20.30.60.8-0.4-0.3
Bone: periosteal estimation10.822.425.0-4.8-4.45.0
Bone: periosteal perimeter5.49.110.4-3.2-2.63.1
Bone: post-yield work2.53.44.8-1.7-1.62.2
Progressive ratio test 1 active lever presses6.77.09.5-3.1-2.62.2
Progressive ratio test 1 breakpoint8.58.911.7-3.4-3.02.4
Progressive ratio test 1 inactive lever presses8.89.613.6-3.7-2.92.5
Progressive ratio test 2 active lever presses5.15.46.3-2.2-2.52.2
Progressive ratio test 2 breakpoint5.15.76.5-2.2-2.52.4
Progressive ratio test 2 inactive lever presses6.77.78.6-2.8-2.92.6
Incentive Sensitization - Responses2.02.12.9-0.9-1.61.7
Incentive Sensitization - Breakpoint1.81.82.8-0.8-1.41.7
Sum of active levers in priming session hrs 5-60.90.91.80.70.6-1.3
Progressive ratio0.60.71.71.30.6-0.0
Food seeking constrained by brief footshock2.22.74.7-1.1-1.52.2
Seeking ratio, punishment vs. effort1.82.23.2-1.8-1.41.3
Retroperitoneal fat weight2.48.09.8-2.6-2.73.1
Reaction time number correct0.71.01.50.80.9-1.2
Reaction time mean minus median0.70.91.81.40.7-0.6
Reaction time mean minus median AUC0.91.21.51.21.1-1.0
Reaction time num false alarms3.75.07.7-2.8-2.11.8
Reaction time num false alarms AUC3.75.27.0-2.6-2.22.0
Reaction time trials correct on left0.71.01.50.80.9-1.2
Reaction time trials on left0.60.91.40.80.8-1.2
Reaction time mean1.11.62.01.41.3-1.0
Reaction time mean AUC1.72.22.61.61.6-1.3
Median of all reaction times0.91.21.51.11.2-0.9
Reaction time omissions0.10.20.30.5-0.10.5
Reaction time false alarm rate3.54.96.2-2.5-2.02.1
Reaction time premature initiation rate1.62.23.2-1.8-1.60.9
Reaction time premature initiations0.60.91.3-1.2-1.10.3
Std. dev. reaction times1.01.43.01.71.0-0.5
Reaction time trials completed0.60.91.40.80.8-1.2
Reaction time trials AUC0.70.91.40.90.9-1.2
Run reversals in cocaine runway, females0.50.51.01.00.5-0.5
Run reversals in cocaine runway, males0.20.20.30.50.4-0.4
Latency to leave start box in cocaine runway0.30.40.50.30.7-0.7
Latency to leave start box in cocaine runway, F0.70.71.3-0.10.9-1.1
Latency to leave start box in cocaine runway, M0.30.30.80.90.40.1
Std. dev. time between licks in bursts0.00.00.1-0.0-0.30.1
Total sessions with >9 infusions1.71.94.1-2.0-1.20.2
Short access day 1 total inactive lever presses2.42.74.5-2.1-1.31.4
Short access day 10 total inactive lever presses1.21.31.5-1.0-1.21.2
Short access day 1 total infusions4.04.28.4-2.9-1.90.9
Short access day 10 total infusions10.912.114.8-3.9-3.43.1
Short access total infusions6.97.812.9-3.6-2.62.0
Short access day 1 locomotion7.98.512.2-3.5-3.12.0
Short access day 10 total locomotion13.815.416.8-4.1-4.03.6
Short access total locomotion10.911.316.7-4.1-3.32.5
One hour access (0.3 mA shock)1.11.31.4-1.2-1.01.2
Compulsive drug intake1.51.52.31.11.5-1.0
One hour access (shock baseline)2.12.42.8-1.5-1.71.4
Social response proportion0.20.20.30.40.5-0.6
Social responses0.40.51.4-1.2-0.40.2
Social time0.60.81.61.20.7-0.6
Soleus weight0.20.71.7-1.3-0.7-0.0
Bone: stiffness2.23.54.8-2.2-1.61.7
Tibialis anterior weight0.31.02.0-0.7-1.40.8
Time to tail flick, vehicle, before self-admin1.51.52.81.71.2-0.5
Time to tail flick, vehicle, after self-admin0.30.30.50.3-0.70.6
Time to tail flick, test, before self-admin2.32.24.12.01.4-0.8
Time to tail flick, test, after self-admin0.20.20.30.40.3-0.6
Delta time to tail flick, vehicle, before/after SA2.42.43.2-1.1-1.81.7
Delta time to tail flick, test, before/after SA0.10.00.1-0.3-0.2-0.1
Tibia length0.20.72.0-1.4-0.3-0.2
Ambulatory time before self-admin0.80.81.10.81.1-0.8
Ambulatory time after self-admin0.10.10.1-0.30.2-0.2
Bone: tissue strength0.60.61.00.30.8-1.0
Total heroin consumption0.10.10.4-0.6-0.1-0.1
Bone: trabecular number1.62.53.1-1.6-1.51.7
Bone: trabecular spacing0.60.80.91.00.8-0.9
Bone: trabecular thickness2.12.53.1-1.4-1.61.8
Bone: trabecular tissue density0.10.20.5-0.20.1-0.7
Water consumed over 24 hours0.70.81.4-1.2-0.70.7
Number of responses in last shaping day1.01.02.1-1.4-1.00.4