Plpp2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Plpp2 0.08 0.06 2.3e-04 0.03 0.03 0.03 0.03 1.1e-04 1.8e-04 1.6e-04 1.3e-04
2 IL gene expression Plpp2 0.16 0.13 2.5e-03 0.07 0.07 0.06 0.07 7.4e-03 8.8e-03 1.2e-02 1.1e-02
3 Adipose gene expression Plpp2 0.34 0.16 0.0e+00 0.34 0.34 0.34 0.34 7.7e-39 5.3e-39 1.1e-38 1.3e-38

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.60.91.30.9-0.91.1
Area under the delay curve2.42.52.7-1.6-1.61.5
BMI with tail6.420.822.9-4.8-4.54.4
BMI without tail2.55.18.4-2.9-2.01.7
Body weight1.14.85.8-2.4-2.22.0
Weight adjusted by age0.60.71.7-1.3-0.40.4
Bone surface0.81.53.61.9-0.40.8
Bone volume0.81.43.01.7-0.60.9
Breakpoint value in progressive ratio session5.66.17.02.22.7-2.6
Number of licking bursts0.20.20.6-0.80.0-0.2
Context. condit. distance diff. score0.20.20.4-0.7-0.40.0
Locomotion velocity, session 10.60.61.61.30.5-0.2
Locomotion distance, session 10.50.72.01.4-0.2-0.0
Locomotion velocity, session 24.45.18.93.01.7-1.9
Locomotion distance, session 21.82.56.42.50.9-0.6
Locomotion velocity, session 37.08.19.62.52.9-3.1
Locomotion distance, session 30.00.00.1-0.20.1-0.3
Stereotopy head waving bouts, day 35.97.08.12.82.4-2.6
Stereotopy head waving duration, day 36.68.08.42.92.7-2.8
Locomotion velocity, session 70.70.81.70.40.6-1.3
Locomotion distance, session 70.30.31.0-1.0-0.3-0.1
Stereotopy head waving bouts, day 70.10.10.40.7-0.00.0
Stereotopy head waving duration, day 70.40.41.21.10.3-0.2
Locomotion velocity, session 80.91.02.41.60.4-0.7
Locomotion distance, session 80.30.40.80.90.3-0.5
Degree of sensitization distance0.40.40.6-0.7-0.80.5
Degree of sensitization stereotypy1.81.92.6-1.0-1.51.6
Conditioned locomotion1.51.83.6-1.9-1.00.8
Cocaine response after cond. corrected5.86.511.1-3.3-2.12.0
Cocaine response after cond. not corrected5.96.511.5-3.4-2.12.0
Cocaine response before conditioning0.60.70.80.90.7-0.9
Saline control response0.00.00.1-0.3-0.20.2
Bone: connectivity density0.60.91.60.4-1.11.3
Bone: cortical apparent density1.01.31.8-1.0-1.01.3
Bone: cortical area0.61.01.5-0.5-1.21.1
Bone: cortical porosity0.40.51.01.00.5-0.4
Bone: cortical porosity0.20.20.50.7-0.20.2
Bone: cortical thickness1.32.12.5-1.1-1.61.6
Bone: cortical thickness0.20.20.5-0.70.2-0.2
Bone: cortical tissue density0.70.91.3-0.8-0.81.1
Condit. Reinf. active minus inactive responses5.05.75.92.32.4-2.4
Condit. Reinf. active-inactive response ratio2.32.53.41.21.8-1.6
Condit. Reinf. active responses4.15.07.02.62.0-2.0
Condit. Reinf. inactive responses1.01.22.91.70.6-0.6
Incentive salience index mean2.83.44.62.11.6-1.7
Condit. Reinf. lever presses0.40.51.21.1-0.40.4
Condit. Reinf. active minus inactive responses1.92.33.31.01.8-1.7
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.5-0.0
Condit. Reinf. active responses1.72.43.01.21.7-1.7
Condit. Reinf. inactive responses1.11.42.10.91.1-1.4
Condit. Reinf. lever presses2.12.93.81.21.9-1.8
Condit. Reinf. lever reinforcers received1.31.82.40.81.6-1.5
Conditioned reinforcement - actives1.91.92.21.51.4-1.3
Conditioned reinforcement - inactives0.40.40.9-1.0-0.50.4
Conditioned locomotion6.88.28.32.92.9-2.8
Patch foraging indifference point 0 sec0.20.30.5-0.3-0.60.7
Patch foraging indifference point AUC0.70.80.90.91.0-0.9
Delay disc. indifference point, 0s delay7.38.011.0-1.7-3.23.3
Delay disc. indifference point, 16s delay0.10.10.1-0.3-0.30.3
Delay disc. indifference point, 2s delay5.56.17.4-2.1-2.72.5
Delay disc. indifference point, 24s delay0.90.91.2-1.1-0.80.8
Delay disc. indifference point, 4s delay0.80.91.1-0.8-1.00.9
Delay disc. indifference point, 8s delay1.61.62.6-1.6-1.10.9
Indifference point function ln k0.30.40.7-0.8-0.50.4
Indifference point function log k0.30.40.7-0.8-0.50.4
Patch foraging total patch changes 0 sec0.10.20.2-0.4-0.50.5
Patch foraging total patch changes 12 sec0.40.61.0-1.0-0.70.6
Patch foraging total patch changes 18 sec1.11.41.51.21.2-1.1
Patch foraging total patch changes 24 sec0.10.10.20.40.2-0.0
Patch foraging total patch changes 6 sec0.10.20.40.60.4-0.1
Patch foraging time to switch 0 sec1.11.72.8-0.3-1.71.5
Patch foraging water rate 0 sec0.40.61.2-1.10.4-0.6
Patch foraging water rate 12 sec1.31.94.7-2.2-0.80.7
Patch foraging water rate 18 sec0.81.11.8-1.40.8-0.9
Patch foraging water rate 24 sec1.01.34.0-2.0-0.0-0.2
Patch foraging water rate 6 sec0.50.71.1-0.60.9-1.0
Seeking ratio, delayed vs. immediate footshock4.34.95.72.42.1-2.1
Distance traveled before self-admin0.70.81.2-0.5-0.91.1
Distance traveled after self-admin0.40.50.80.90.6-0.5
Extensor digitorum longus weight4.517.724.6-5.0-4.13.4
Bone: elastic displacement0.10.10.20.40.4-0.0
Bone: elastic work0.40.50.7-0.6-0.60.8
Bone: endosteal estimation0.10.30.3-0.6-0.60.4
Bone: endosteal perimeter0.30.50.91.00.5-0.7
Epididymis fat weight0.30.70.90.81.0-0.8
Delta time in closed arm before/after self-admin1.21.23.2-1.8-0.40.3
Delta time in open arm before/after self-admin1.31.21.7-0.8-1.21.3
Diff in mean of infusions in LGA sessions2.12.32.41.51.6-1.5
Delay discount exponential model param2.22.32.51.61.6-1.4
Extinction: sum of active levers before priming1.21.21.80.71.2-1.3
Active lever presses in extinction session 62.32.22.71.71.5-1.3
Bone: final force1.42.22.9-1.3-1.71.4
Bone: final moment1.11.82.3-1.2-1.51.3
Food consumed during 24 hour testing period0.60.81.2-1.1-0.80.7
Glucose1.52.22.4-1.5-1.41.5
Heart weight0.20.30.70.30.8-0.4
Delay discount hyperbolic model param3.03.23.51.81.9-1.7
Intermittent access intake day 1-15 change6.26.16.92.32.6-2.5
Intermittent access intake escalation5.75.67.11.82.7-2.6
Intermittent access intake escalation 26.86.88.72.02.9-2.7
Intermitt. access day 1 inactive lever presses0.20.20.2-0.20.5-0.5
Intermitt. access day 15 inactive lever presses0.50.60.80.50.8-0.9
Intermitt. access escalation Index0.30.30.40.1-0.60.6
Intermittent access day 1 total infusions0.00.00.1-0.1-0.20.2
Intermittent access day 15 total infusions1.92.22.61.21.6-1.6
Intermittent access terminal intake (last 3 days)1.01.11.21.01.1-1.1
Intermittent access total infusions0.20.30.30.40.5-0.6
Intermittent access day 1 locomotion0.50.50.70.60.8-0.8
Intermittent access day 15 total locomotion3.84.14.31.92.1-2.1
Intermittent access total locomotion1.01.11.31.11.0-1.0
Intermittent access standard deviation2.52.73.31.21.8-1.8
Left kidney weight0.00.10.20.4-0.0-0.0
Right kidney weight1.23.43.51.91.9-1.8
Cocaine induced anxiety0.50.61.61.30.4-0.3
Post-drug Anxiety0.60.61.61.30.5-0.4
Baseline Anxiety0.30.30.5-0.00.6-0.7
Tail length3.09.211.12.63.1-3.3
Length with tail1.86.67.22.72.5-2.5
Length without tail0.10.20.70.90.1-0.0
Times rat made contact with spout0.30.30.8-0.9-0.30.1
Lifetime Intake0.10.10.10.30.3-0.4
Liver weight, left2.03.23.9-2.0-1.71.7
Liver weight, right1.42.42.8-1.4-1.71.5
Locomotor activity2.54.06.42.51.6-1.7
Locomotor testing distance1.52.53.92.01.4-1.3
Locomotor testing rearing0.10.10.1-0.30.2-0.3
Locomotion in novel chamber0.10.10.30.00.5-0.4
Locomotion in novel chamber post-restriction1.01.21.90.61.1-1.4
Fecal boli incidents, locomotor time 11.82.02.5-1.6-1.41.2
Change in fecal boli incidents, locomotor task0.10.10.10.40.2-0.3
Time >=10cm from walls, locomotor time 11.11.11.9-0.4-1.21.4
Bouts of movement, locomotor time 10.30.30.70.20.4-0.8
Total resting periods, locomotor time 10.30.40.70.40.5-0.9
Rest time, locomotor task time 10.50.50.80.70.5-0.9
Distance moved, locomotor task time 11.01.12.1-0.3-1.11.4
Vertical activity count, locomotor time 10.40.50.8-0.9-0.30.7
Time >=10cm from walls, locomotor time 22.02.12.8-1.7-1.41.2
Bouts of movement, locomotor time 20.70.71.71.30.5-0.4
Total resting periods, locomotor time 20.60.71.61.30.5-0.4
Rest time, locomotor task time 20.60.71.21.10.6-0.6
Distance moved, locomotor task time 20.70.81.2-1.1-0.80.8
Vertical activity count, locomotor time 20.91.02.1-1.5-0.70.6
Light reinforcement 16.111.213.93.73.2-3.1
Light reinforcement 22.02.73.82.01.5-1.4
Bone: marrow area0.10.30.3-0.6-0.60.4
Bone: maximum diameter0.71.22.31.50.8-0.8
Bone: maximum force1.32.32.6-1.5-1.61.4
Bone: maximum moment1.11.82.1-1.3-1.41.3
Mean time between licks in bursts4.25.96.42.22.5-2.5
Mean num. licks in bursts0.00.00.10.1-0.20.3
Cd content in liver0.30.30.4-0.4-0.70.7
Co content in liver0.50.61.00.60.8-1.0
Cu content in liver0.20.20.50.1-0.70.5
Fe content in liver0.20.20.5-0.10.3-0.7
K content in liver0.20.10.20.5-0.4-0.0
Mg content in liver0.20.20.20.5-0.50.2
Mn content in liver1.21.33.31.80.4-0.7
Na content in liver0.80.91.8-0.4-1.40.8
Rb content in liver0.50.60.9-0.0-1.00.9
Se content in liver0.40.40.80.60.4-0.9
Sr content in liver0.10.10.2-0.40.3-0.4
Zn content in liver1.82.03.00.51.7-1.6
Bone: minimum diameter0.00.00.00.1-0.2-0.1
Time in familiar zone, hab. session 12.32.12.61.11.6-1.6
Time in novel zone, hab. session 11.21.21.7-0.6-1.21.3
Total zone transitions, hab. session 11.11.63.61.90.8-0.8
Total locomotion distance, hab. session 11.31.94.52.10.6-0.9
Locomotion velocity, hab. session 11.92.65.52.30.9-1.2
Time in familiar zone, hab. session 26.56.78.52.12.9-2.7
Time in novel zone, hab. session 25.15.16.2-1.8-2.52.4
Total zone transitions, hab. session 20.60.80.90.9-0.80.9
Total locomotion distance, hab. session 21.31.74.12.00.8-0.7
Locomotion velocity, hab. session 21.41.94.92.20.7-0.6
Novel to familiar place preference ratio4.54.76.1-1.5-2.42.5
Novelty place preference2.82.83.9-1.0-1.92.0
Time in novel zone, NPP test3.13.14.0-1.2-2.02.0
Total zone transitions, NPP test0.30.40.91.0-0.30.5
Total locomotion distance, NPP test0.20.30.70.8-0.40.3
Locomotion velocity, NPP test0.30.41.31.1-0.10.2
Intraocular pressure0.20.30.5-0.70.5-0.3
Delta distance traveled before/after self-admin1.92.02.31.41.4-1.5
Delta ambulatory time before/after self-admin2.12.32.41.51.4-1.6
Parametrial fat weight0.40.81.10.61.0-1.0
Pavlov. Cond. lever latency0.10.10.3-0.50.40.1
Pavlov. Cond. magazine entry latency3.84.96.12.02.1-2.5
Pavlov. Cond. change in total contacts0.20.20.50.40.2-0.7
Pavlov. Cond. index score0.81.01.31.10.6-1.1
Pavlov. Cond. latency score0.70.91.61.30.5-1.0
Pavlov. Cond. lever contacts0.20.30.70.8-0.2-0.3
Pavlov. Cond. magazine entry number1.21.41.9-1.2-1.11.4
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.10.5-0.4
Pavlov. Cond. lever-magazine prob. diff.1.21.51.91.40.9-1.4
Pavlov. Cond. response bias1.62.02.61.31.2-1.6
Pavlov. Cond. lever latency0.50.70.9-0.6-0.90.9
Pavlov. Cond. magazine entry latency0.40.50.70.60.7-0.9
Pavlov. Cond. change in total contacts0.40.60.90.60.9-0.8
Pavlov. Cond. index score0.60.81.10.61.0-1.0
Pavlov. Cond. latency score0.60.70.80.70.9-0.9
Pavlov. Cond. lever contacts0.50.71.00.41.0-1.0
Pavlov. Cond. magazine entry number0.70.91.1-0.8-0.91.1
Pavlov. Cond. intertrial magazine entries0.30.40.9-1.0-0.40.3
Pavlov. Cond. lever-magazine prob. diff.0.70.81.00.71.0-1.0
Pavlov. Cond. response bias1.52.02.61.01.6-1.6
Time in closed arm before self-admin0.80.91.5-0.1-1.11.2
Time in closed arm after self-admin0.00.00.00.00.2-0.1
Time in open arm before self-admin0.80.81.30.60.9-1.1
Time in open arm after self-admin0.80.91.0-1.0-0.90.9
Bone: periosteal estimation0.30.61.0-0.4-1.00.8
Bone: periosteal perimeter0.10.10.40.6-0.1-0.1
Bone: post-yield work0.50.61.2-1.1-0.80.3
Progressive ratio test 1 active lever presses0.10.10.2-0.4-0.0-0.2
Progressive ratio test 1 breakpoint0.10.10.3-0.5-0.1-0.1
Progressive ratio test 1 inactive lever presses0.10.10.10.30.2-0.3
Progressive ratio test 2 active lever presses0.20.20.3-0.00.5-0.5
Progressive ratio test 2 breakpoint0.20.20.30.30.5-0.5
Progressive ratio test 2 inactive lever presses0.00.00.10.30.1-0.1
Incentive Sensitization - Responses0.10.10.2-0.10.4-0.2
Incentive Sensitization - Breakpoint0.10.10.20.00.5-0.3
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.10.1
Progressive ratio0.10.10.2-0.5-0.30.1
Food seeking constrained by brief footshock0.40.50.90.90.4-0.7
Seeking ratio, punishment vs. effort0.30.40.70.80.4-0.4
Retroperitoneal fat weight0.20.60.9-0.9-0.60.7
Reaction time number correct0.71.02.7-1.6-0.40.2
Reaction time mean minus median0.70.91.30.61.1-1.0
Reaction time mean minus median AUC0.00.00.10.40.00.1
Reaction time num false alarms0.30.51.3-1.1-0.3-0.1
Reaction time num false alarms AUC0.40.61.8-1.3-0.3-0.1
Reaction time trials correct on left0.71.02.7-1.6-0.40.2
Reaction time trials on left0.70.92.6-1.6-0.40.3
Reaction time mean0.00.00.10.1-0.10.3
Reaction time mean AUC0.10.10.2-0.0-0.20.5
Median of all reaction times0.30.40.7-0.3-0.70.8
Reaction time omissions0.30.40.70.80.6-0.1
Reaction time false alarm rate0.10.10.2-0.4-0.30.0
Reaction time premature initiation rate1.01.42.00.81.4-1.2
Reaction time premature initiations0.71.01.70.01.3-1.2
Std. dev. reaction times0.20.20.30.40.6-0.4
Reaction time trials completed0.70.92.6-1.6-0.40.3
Reaction time trials AUC0.71.02.9-1.7-0.40.2
Run reversals in cocaine runway, females0.50.50.60.80.6-0.7
Run reversals in cocaine runway, males1.61.62.21.51.2-1.0
Latency to leave start box in cocaine runway0.70.71.91.40.50.1
Latency to leave start box in cocaine runway, F0.70.81.50.6-0.71.2
Latency to leave start box in cocaine runway, M2.82.73.51.01.9-1.9
Std. dev. time between licks in bursts0.60.81.01.00.8-0.9
Total sessions with >9 infusions0.00.00.10.1-0.30.2
Short access day 1 total inactive lever presses0.10.10.20.40.3-0.3
Short access day 10 total inactive lever presses0.00.00.0-0.2-0.00.0
Short access day 1 total infusions0.20.30.70.80.2-0.2
Short access day 10 total infusions0.10.20.30.00.4-0.6
Short access total infusions0.00.00.00.1-0.10.0
Short access day 1 locomotion1.01.01.61.30.9-0.8
Short access day 10 total locomotion3.54.04.61.72.1-2.1
Short access total locomotion0.80.81.01.00.8-0.9
One hour access (0.3 mA shock)0.10.10.2-0.4-0.30.2
Compulsive drug intake1.41.51.9-0.8-1.41.4
One hour access (shock baseline)0.20.30.5-0.10.6-0.7
Social response proportion0.90.92.01.40.7-0.5
Social responses6.48.210.33.22.7-2.7
Social time0.60.71.2-0.5-0.91.1
Soleus weight9.126.627.9-5.3-5.25.0
Bone: stiffness2.74.35.6-2.0-2.41.9
Tibialis anterior weight1.13.64.3-2.1-2.01.6
Time to tail flick, vehicle, before self-admin0.50.51.31.10.4-0.4
Time to tail flick, vehicle, after self-admin0.30.30.4-0.20.6-0.6
Time to tail flick, test, before self-admin0.30.20.70.80.2-0.1
Time to tail flick, test, after self-admin0.30.30.60.80.5-0.4
Delta time to tail flick, vehicle, before/after SA0.50.51.5-1.2-0.20.2
Delta time to tail flick, test, before/after SA0.30.20.40.00.6-0.6
Tibia length0.82.22.61.31.5-1.6
Ambulatory time before self-admin0.60.71.1-0.5-0.81.0
Ambulatory time after self-admin0.20.20.40.70.4-0.3
Bone: tissue strength1.91.92.3-1.1-1.51.5
Total heroin consumption2.02.32.51.61.5-1.4
Bone: trabecular number0.61.02.51.60.4-0.4
Bone: trabecular spacing0.91.23.4-1.9-0.1-0.1
Bone: trabecular thickness1.31.51.81.3-1.01.4
Bone: trabecular tissue density1.42.02.9-1.7-1.41.1
Water consumed over 24 hours0.70.81.2-0.7-1.10.9
Number of responses in last shaping day0.10.10.10.30.4-0.3