Pdcl2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Pdcl2 0.04 0.02 1.8e-05 0.04 0.04 0.02 0.03 2.7e-05 1.7e-05 8.9e-04 3.1e-04
2 Brain mRNA stability Pdcl2 0.16 0.12 1.8e-03 0.07 0.04 0.06 0.06 5.3e-07 7.2e-05 5.7e-06 1.2e-06
3 PL intron excision ratio chr14_31889055_31895084 0.03 0.03 7.3e-03 0 0.01 0 0 7.6e-02 5.9e-02 2.6e-01 2.2e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.42.8-0.71.7-1.0
Area under the delay curve0.30.30.9-1.00.1-0.1
BMI with tail0.20.60.80.60.8-0.9
BMI without tail0.61.32.20.51.5-1.2
Body weight0.41.93.60.41.9-1.4
Weight adjusted by age0.50.51.30.5-0.1-1.1
Bone surface0.30.61.2-0.21.1-0.7
Bone volume0.50.81.20.11.1-1.1
Breakpoint value in progressive ratio session0.91.01.9-1.00.21.4
Number of licking bursts0.50.61.1-0.10.8-1.1
Context. condit. distance diff. score2.83.36.02.4-0.4-2.0
Locomotion velocity, session 10.30.30.50.6-0.4-0.7
Locomotion distance, session 10.20.30.50.7-0.6-0.0
Locomotion velocity, session 20.40.40.7-0.6-0.50.9
Locomotion distance, session 21.52.23.4-1.5-0.91.9
Locomotion velocity, session 30.60.71.31.10.6-0.7
Locomotion distance, session 30.80.92.31.5-0.4-0.5
Stereotopy head waving bouts, day 31.21.42.9-0.6-1.71.0
Stereotopy head waving duration, day 34.85.814.31.7-3.80.5
Locomotion velocity, session 72.72.95.51.8-0.2-2.3
Locomotion distance, session 72.93.75.92.4-2.0-0.9
Stereotopy head waving bouts, day 73.23.69.11.3-3.00.0
Stereotopy head waving duration, day 72.02.45.7-2.40.51.1
Locomotion velocity, session 80.20.20.4-0.60.30.3
Locomotion distance, session 80.91.42.31.5-1.2-0.6
Degree of sensitization distance1.21.21.81.4-1.1-0.8
Degree of sensitization stereotypy1.01.12.6-1.60.80.4
Conditioned locomotion0.70.81.6-0.7-1.30.5
Cocaine response after cond. corrected0.60.61.1-0.6-1.10.6
Cocaine response after cond. not corrected0.20.30.7-0.3-0.80.3
Cocaine response before conditioning0.20.20.30.50.3-0.5
Saline control response0.70.91.90.10.9-1.4
Bone: connectivity density1.52.45.1-2.31.20.9
Bone: cortical apparent density2.33.18.3-0.82.9-0.6
Bone: cortical area1.92.95.50.91.5-2.3
Bone: cortical porosity0.70.71.9-1.4-0.30.4
Bone: cortical porosity0.60.72.0-1.40.1-0.1
Bone: cortical thickness2.33.87.11.01.8-2.7
Bone: cortical thickness0.10.20.3-0.3-0.2-0.6
Bone: cortical tissue density2.22.97.8-0.72.8-0.6
Condit. Reinf. active minus inactive responses1.01.11.8-0.0-1.41.2
Condit. Reinf. active-inactive response ratio0.30.30.60.5-0.70.0
Condit. Reinf. active responses1.72.13.6-0.6-1.51.9
Condit. Reinf. inactive responses0.60.81.8-0.7-0.11.3
Incentive salience index mean0.81.02.0-0.8-0.61.4
Condit. Reinf. lever presses1.41.82.8-1.70.81.4
Condit. Reinf. active minus inactive responses0.20.20.7-0.00.1-0.8
Condit. Reinf. active-inactive response ratio0.20.20.4-0.30.2-0.6
Condit. Reinf. active responses0.40.61.10.60.4-1.1
Condit. Reinf. inactive responses0.81.02.11.50.3-0.8
Condit. Reinf. lever presses0.30.41.0-1.00.40.4
Condit. Reinf. lever reinforcers received0.20.20.40.30.5-0.6
Conditioned reinforcement - actives0.10.10.20.20.5-0.1
Conditioned reinforcement - inactives1.71.92.9-1.2-1.21.7
Conditioned locomotion0.20.20.50.30.4-0.7
Patch foraging indifference point 0 sec1.32.04.72.2-0.2-1.1
Patch foraging indifference point AUC1.21.44.22.0-0.2-0.2
Delay disc. indifference point, 0s delay0.30.30.5-0.7-0.70.2
Delay disc. indifference point, 16s delay0.90.91.7-1.30.90.0
Delay disc. indifference point, 2s delay0.10.10.2-0.20.0-0.5
Delay disc. indifference point, 24s delay1.21.13.0-0.71.70.1
Delay disc. indifference point, 4s delay0.50.61.1-1.0-0.7-0.4
Delay disc. indifference point, 8s delay0.10.10.3-0.6-0.20.1
Indifference point function ln k0.81.22.4-1.6-0.80.6
Indifference point function log k0.81.22.4-1.6-0.80.6
Patch foraging total patch changes 0 sec2.13.47.62.8-0.1-1.6
Patch foraging total patch changes 12 sec0.91.22.61.60.5-0.8
Patch foraging total patch changes 18 sec2.93.88.02.8-0.3-1.8
Patch foraging total patch changes 24 sec2.32.86.22.50.6-1.4
Patch foraging total patch changes 6 sec1.62.46.02.50.1-1.0
Patch foraging time to switch 0 sec1.32.03.0-1.71.70.0
Patch foraging water rate 0 sec0.91.53.90.8-2.00.2
Patch foraging water rate 12 sec1.42.26.50.2-2.60.1
Patch foraging water rate 18 sec1.21.62.9-1.2-0.71.7
Patch foraging water rate 24 sec0.30.50.7-0.6-0.90.6
Patch foraging water rate 6 sec1.31.95.10.0-2.30.8
Seeking ratio, delayed vs. immediate footshock1.82.14.2-1.4-0.32.1
Distance traveled before self-admin1.21.32.00.31.3-1.4
Distance traveled after self-admin0.40.50.80.10.8-0.9
Extensor digitorum longus weight1.14.39.0-3.02.00.2
Bone: elastic displacement0.20.20.50.1-0.7-0.4
Bone: elastic work0.20.20.60.1-0.1-0.8
Bone: endosteal estimation0.30.61.10.50.6-1.0
Bone: endosteal perimeter0.00.10.10.3-0.3-0.3
Epididymis fat weight0.41.02.81.70.4-0.3
Delta time in closed arm before/after self-admin0.50.51.31.10.2-0.4
Delta time in open arm before/after self-admin0.10.10.2-0.40.2-0.1
Diff in mean of infusions in LGA sessions0.60.71.4-0.7-0.41.2
Delay discount exponential model param0.20.30.50.7-0.30.4
Extinction: sum of active levers before priming0.90.91.60.3-0.91.3
Active lever presses in extinction session 60.10.10.20.4-0.00.3
Bone: final force1.01.62.8-0.61.3-1.7
Bone: final moment0.91.42.2-0.91.1-1.5
Food consumed during 24 hour testing period0.50.61.20.3-1.10.6
Glucose0.00.00.0-0.1-0.1-0.0
Heart weight0.20.30.5-0.1-0.60.7
Delay discount hyperbolic model param0.20.20.60.8-0.10.3
Intermittent access intake day 1-15 change1.01.02.1-1.50.30.9
Intermittent access intake escalation0.80.81.5-1.20.20.8
Intermittent access intake escalation 21.71.63.3-1.8-0.41.2
Intermitt. access day 1 inactive lever presses3.33.58.02.8-0.8-1.3
Intermitt. access day 15 inactive lever presses1.11.22.5-0.6-0.81.6
Intermitt. access escalation Index0.50.41.10.3-1.0-0.4
Intermittent access day 1 total infusions1.31.52.6-0.5-1.61.3
Intermittent access day 15 total infusions2.63.03.6-1.7-1.51.9
Intermittent access terminal intake (last 3 days)4.95.46.1-2.3-2.22.5
Intermittent access total infusions1.71.82.2-1.4-1.21.5
Intermittent access day 1 locomotion0.70.71.80.4-1.40.4
Intermittent access day 15 total locomotion1.51.62.5-1.0-1.21.6
Intermittent access total locomotion0.20.20.5-0.2-0.70.3
Intermittent access standard deviation0.20.20.3-0.50.50.1
Left kidney weight1.85.010.70.43.3-2.1
Right kidney weight0.61.71.91.21.4-1.3
Cocaine induced anxiety0.30.30.8-0.90.3-0.1
Post-drug Anxiety0.50.61.50.11.2-0.5
Baseline Anxiety0.10.10.30.00.20.6
Tail length0.51.62.60.41.6-1.4
Length with tail0.31.12.30.41.5-0.9
Length without tail0.30.60.90.61.0-0.7
Times rat made contact with spout0.10.20.30.10.4-0.5
Lifetime Intake1.21.31.9-1.3-0.51.4
Liver weight, left0.20.40.90.90.1-0.4
Liver weight, right0.30.51.5-0.21.20.3
Locomotor activity3.04.88.83.0-2.0-1.2
Locomotor testing distance2.64.38.02.8-1.5-1.6
Locomotor testing rearing1.21.84.32.1-0.0-1.1
Locomotion in novel chamber2.12.73.4-1.5-1.81.6
Locomotion in novel chamber post-restriction0.20.30.40.50.4-0.6
Fecal boli incidents, locomotor time 12.12.34.72.2-0.6-1.3
Change in fecal boli incidents, locomotor task0.90.81.7-1.3-0.10.9
Time >=10cm from walls, locomotor time 10.10.10.1-0.20.3-0.3
Bouts of movement, locomotor time 10.10.10.10.4-0.1-0.3
Total resting periods, locomotor time 10.30.30.60.50.3-0.7
Rest time, locomotor task time 11.01.12.01.4-1.0-0.5
Distance moved, locomotor task time 10.91.02.4-1.50.20.7
Vertical activity count, locomotor time 12.62.86.0-2.4-0.51.4
Time >=10cm from walls, locomotor time 21.31.42.4-1.5-0.11.4
Bouts of movement, locomotor time 20.40.40.80.9-0.70.1
Total resting periods, locomotor time 20.80.91.71.3-1.0-0.2
Rest time, locomotor task time 23.84.36.82.6-2.2-1.1
Distance moved, locomotor task time 24.24.99.5-3.11.41.7
Vertical activity count, locomotor time 25.86.412.0-3.50.22.7
Light reinforcement 10.20.40.50.60.5-0.7
Light reinforcement 20.60.91.31.1-1.0-0.5
Bone: marrow area0.20.50.90.40.6-1.0
Bone: maximum diameter0.40.71.01.00.3-1.0
Bone: maximum force1.11.94.10.21.2-2.0
Bone: maximum moment0.91.53.3-0.11.1-1.8
Mean time between licks in bursts1.31.93.92.0-0.8-1.0
Mean num. licks in bursts0.50.61.10.2-1.10.8
Cd content in liver0.20.20.20.5-0.40.4
Co content in liver1.31.54.0-2.00.40.6
Cu content in liver0.10.10.30.4-0.10.5
Fe content in liver1.61.93.4-0.3-1.81.5
K content in liver4.14.14.72.01.9-2.2
Mg content in liver1.81.83.81.90.1-1.3
Mn content in liver3.23.77.8-2.81.31.2
Na content in liver0.80.92.2-0.6-0.11.5
Rb content in liver0.10.10.3-0.20.5-0.0
Se content in liver1.01.22.0-1.1-0.71.4
Sr content in liver0.80.72.10.21.4-0.3
Zn content in liver0.30.30.70.2-0.80.4
Bone: minimum diameter1.22.24.31.21.1-2.1
Time in familiar zone, hab. session 10.60.61.3-0.4-1.10.5
Time in novel zone, hab. session 10.20.20.30.50.5-0.4
Total zone transitions, hab. session 10.60.91.2-1.1-1.10.7
Total locomotion distance, hab. session 112.718.136.74.2-6.1-0.5
Locomotion velocity, hab. session 110.715.128.44.1-5.3-0.7
Time in familiar zone, hab. session 20.10.10.30.10.10.5
Time in novel zone, hab. session 20.10.10.2-0.5-0.3-0.1
Total zone transitions, hab. session 20.20.20.3-0.30.6-0.5
Total locomotion distance, hab. session 27.49.814.33.8-3.7-1.3
Locomotion velocity, hab. session 26.99.313.73.7-3.5-1.2
Novel to familiar place preference ratio1.01.02.7-0.2-1.70.6
Novelty place preference1.11.12.3-0.6-1.50.8
Time in novel zone, NPP test1.21.32.0-0.9-1.41.0
Total zone transitions, NPP test0.50.71.50.70.4-1.2
Total locomotion distance, NPP test9.713.221.04.6-4.0-1.7
Locomotion velocity, NPP test10.414.723.34.8-4.2-1.8
Intraocular pressure1.82.54.7-0.7-2.21.5
Delta distance traveled before/after self-admin0.10.10.20.5-0.0-0.4
Delta ambulatory time before/after self-admin0.20.30.60.3-0.80.1
Parametrial fat weight0.91.84.82.2-0.6-0.6
Pavlov. Cond. lever latency0.20.30.40.6-0.7-0.2
Pavlov. Cond. magazine entry latency0.20.30.5-0.0-0.60.7
Pavlov. Cond. change in total contacts0.70.81.5-0.90.31.2
Pavlov. Cond. index score0.20.30.6-0.5-0.10.8
Pavlov. Cond. latency score0.10.10.1-0.20.20.4
Pavlov. Cond. lever contacts0.40.50.9-1.00.60.4
Pavlov. Cond. magazine entry number1.31.62.30.51.5-1.5
Pavlov. Cond. intertrial magazine entries1.82.23.7-1.5-0.81.9
Pavlov. Cond. lever-magazine prob. diff.0.40.51.0-0.8-0.11.0
Pavlov. Cond. response bias0.60.71.1-0.9-0.31.1
Pavlov. Cond. lever latency0.40.61.00.60.5-1.0
Pavlov. Cond. magazine entry latency0.30.30.5-0.50.40.7
Pavlov. Cond. change in total contacts0.10.20.3-0.10.40.6
Pavlov. Cond. index score0.50.61.3-0.60.21.1
Pavlov. Cond. latency score0.40.51.2-0.60.11.1
Pavlov. Cond. lever contacts0.30.40.7-0.7-0.00.9
Pavlov. Cond. magazine entry number0.40.51.00.5-0.6-1.0
Pavlov. Cond. intertrial magazine entries1.11.52.71.60.1-1.3
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.30.50.9
Pavlov. Cond. response bias0.60.81.6-0.8-0.11.3
Time in closed arm before self-admin0.40.51.2-0.21.1-0.5
Time in closed arm after self-admin0.60.60.70.70.8-0.7
Time in open arm before self-admin2.02.13.01.7-1.7-0.7
Time in open arm after self-admin0.50.51.10.8-1.00.0
Bone: periosteal estimation1.22.44.50.91.4-2.1
Bone: periosteal perimeter0.30.50.80.8-0.1-0.9
Bone: post-yield work0.00.00.1-0.1-0.20.3
Progressive ratio test 1 active lever presses0.30.30.4-0.6-0.40.5
Progressive ratio test 1 breakpoint0.10.10.3-0.3-0.50.3
Progressive ratio test 1 inactive lever presses0.30.40.7-0.2-0.60.8
Progressive ratio test 2 active lever presses1.51.61.8-1.3-1.11.3
Progressive ratio test 2 breakpoint0.91.01.0-1.0-1.01.0
Progressive ratio test 2 inactive lever presses3.43.95.3-1.3-2.22.3
Incentive Sensitization - Responses1.81.83.9-2.0-0.01.2
Incentive Sensitization - Breakpoint1.71.73.7-1.9-0.21.2
Sum of active levers in priming session hrs 5-60.20.20.4-0.60.4-0.1
Progressive ratio2.83.24.92.20.9-2.0
Food seeking constrained by brief footshock2.32.86.11.5-0.1-2.5
Seeking ratio, punishment vs. effort0.20.30.4-0.7-0.50.1
Retroperitoneal fat weight0.41.32.61.60.8-0.9
Reaction time number correct0.60.91.4-0.01.2-1.2
Reaction time mean minus median1.31.72.2-1.51.50.9
Reaction time mean minus median AUC1.82.44.0-2.01.21.3
Reaction time num false alarms0.20.20.4-0.4-0.20.7
Reaction time num false alarms AUC0.10.10.2-0.4-0.20.5
Reaction time trials correct on left0.60.91.4-0.01.2-1.2
Reaction time trials on left0.71.01.6-0.11.3-1.2
Reaction time mean1.82.64.0-1.92.00.4
Reaction time mean AUC1.82.43.6-1.91.90.4
Median of all reaction times1.72.33.9-1.72.00.2
Reaction time omissions3.34.59.5-2.03.10.3
Reaction time false alarm rate0.71.01.7-0.3-1.11.3
Reaction time premature initiation rate3.24.37.6-2.81.41.8
Reaction time premature initiations2.73.85.7-2.42.20.9
Std. dev. reaction times1.21.62.6-1.51.60.3
Reaction time trials completed0.71.01.6-0.11.3-1.2
Reaction time trials AUC0.60.91.3-0.21.1-1.1
Run reversals in cocaine runway, females0.30.20.4-0.50.7-0.3
Run reversals in cocaine runway, males1.00.92.10.70.5-1.4
Latency to leave start box in cocaine runway2.52.74.32.10.9-1.7
Latency to leave start box in cocaine runway, F0.91.01.61.30.8-0.8
Latency to leave start box in cocaine runway, M1.81.73.51.9-0.3-1.2
Std. dev. time between licks in bursts0.60.71.6-0.0-1.30.7
Total sessions with >9 infusions0.30.30.8-0.3-0.20.9
Short access day 1 total inactive lever presses1.11.21.81.3-1.30.5
Short access day 10 total inactive lever presses1.61.73.92.00.1-1.1
Short access day 1 total infusions0.70.71.2-0.80.51.1
Short access day 10 total infusions1.21.32.4-1.2-0.31.5
Short access total infusions0.40.50.9-0.60.11.0
Short access day 1 locomotion0.10.10.20.5-0.40.0
Short access day 10 total locomotion0.30.30.60.8-0.5-0.1
Short access total locomotion0.30.30.70.8-0.4-0.1
One hour access (0.3 mA shock)1.92.32.6-1.3-1.61.6
Compulsive drug intake1.11.22.41.6-0.6-0.8
One hour access (shock baseline)2.02.44.8-2.2-0.21.5
Social response proportion1.41.64.5-0.32.1-0.3
Social responses1.92.43.31.31.8-1.5
Social time1.62.24.7-0.92.2-0.9
Soleus weight0.20.51.2-1.10.10.6
Bone: stiffness1.01.63.20.41.3-1.8
Tibialis anterior weight0.72.54.3-2.11.80.3
Time to tail flick, vehicle, before self-admin0.60.61.3-0.60.01.2
Time to tail flick, vehicle, after self-admin2.52.76.12.5-0.4-1.4
Time to tail flick, test, before self-admin0.40.40.90.4-1.00.2
Time to tail flick, test, after self-admin0.60.71.41.2-0.5-0.6
Delta time to tail flick, vehicle, before/after SA0.70.71.00.21.0-0.9
Delta time to tail flick, test, before/after SA0.00.00.00.10.10.0
Tibia length0.10.40.7-0.30.8-0.6
Ambulatory time before self-admin2.02.13.80.21.9-1.5
Ambulatory time after self-admin0.70.81.4-0.31.2-0.9
Bone: tissue strength1.41.42.31.10.9-1.5
Total heroin consumption0.20.20.6-0.1-0.10.8
Bone: trabecular number0.50.71.6-0.21.3-0.7
Bone: trabecular spacing0.10.10.40.1-0.6-0.0
Bone: trabecular thickness0.20.30.6-0.70.10.6
Bone: trabecular tissue density1.31.82.81.31.0-1.7
Water consumed over 24 hours0.70.91.6-1.3-0.11.0
Number of responses in last shaping day0.70.71.00.8-1.00.7