Pard6a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Pard6a 0.02 0.01 9.6e-03 0.02 0 0.01 0.01 6.2e-03 7.3e-02 4.8e-02 8.3e-03
2 IC mRNA stability Pard6a 0.07 0.05 4.1e-03 0.04 0.05 0.03 0.04 1.1e-02 3.2e-03 1.5e-02 1.0e-02
3 Adipose alternative polyA NM_001003654.3 0.18 0.11 5.5e-03 0 0.02 0.01 0.01 3.0e-01 6.2e-03 8.5e-03 5.7e-02
4 NAcc mRNA stability Pard6a 0.02 0.01 1.7e-03 0.03 0.01 0.02 0.02 6.9e-05 1.5e-02 8.5e-04 2.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.1-0.2-0.3-0.20.0
Area under the delay curve0.10.10.2-0.1-0.00.50.0
BMI with tail0.20.82.0-0.8-0.51.40.0
BMI without tail0.10.41.4-0.3-0.11.20.0
Body weight0.20.91.5-1.2-1.20.80.0
Weight adjusted by age0.10.10.4-0.10.0-0.60.0
Bone surface0.50.92.3-1.1-1.50.10.0
Bone volume0.40.71.7-0.9-1.3-0.70.0
Breakpoint value in progressive ratio session1.21.42.41.51.6-1.00.0
Number of licking bursts0.60.91.8-0.9-1.11.30.0
Context. condit. distance diff. score0.30.30.60.70.3-0.80.0
Locomotion velocity, session 10.50.51.8-0.3-0.31.30.0
Locomotion distance, session 10.10.10.20.50.30.50.0
Locomotion velocity, session 20.50.61.61.20.80.30.0
Locomotion distance, session 20.20.30.70.60.30.80.0
Locomotion velocity, session 30.20.20.70.30.50.80.0
Locomotion distance, session 30.20.20.50.40.3-0.70.0
Stereotopy head waving bouts, day 30.10.10.2-0.5-0.40.50.0
Stereotopy head waving duration, day 30.40.50.7-0.8-0.90.60.0
Locomotion velocity, session 70.40.51.70.50.2-1.30.0
Locomotion distance, session 70.40.51.60.50.4-1.30.0
Stereotopy head waving bouts, day 70.20.20.4-0.6-0.50.50.0
Stereotopy head waving duration, day 70.70.91.4-1.1-0.91.20.0
Locomotion velocity, session 80.20.31.10.1-0.01.10.0
Locomotion distance, session 80.30.41.21.10.70.10.0
Degree of sensitization distance0.10.10.5-0.1-0.0-0.70.0
Degree of sensitization stereotypy0.30.30.6-0.8-0.60.40.0
Conditioned locomotion0.70.92.4-1.0-1.5-0.00.0
Cocaine response after cond. corrected0.50.61.8-1.4-0.70.50.0
Cocaine response after cond. not corrected0.30.40.9-1.0-0.20.80.0
Cocaine response before conditioning0.70.81.31.01.20.80.0
Saline control response3.04.17.1-2.3-2.71.90.0
Bone: connectivity density0.00.00.10.30.20.10.0
Bone: cortical apparent density0.30.41.10.61.0-0.20.0
Bone: cortical area0.30.51.6-0.4-0.6-1.30.0
Bone: cortical porosity0.50.51.11.10.5-0.80.0
Bone: cortical porosity0.40.40.91.00.5-0.80.0
Bone: cortical thickness0.10.20.7-0.3-0.4-0.80.0
Bone: cortical thickness1.51.86.80.60.2-2.60.0
Bone: cortical tissue density0.30.41.20.71.1-0.20.0
Condit. Reinf. active minus inactive responses2.73.15.22.22.3-1.50.0
Condit. Reinf. active-inactive response ratio2.22.34.41.92.1-1.10.0
Condit. Reinf. active responses2.22.74.62.12.0-1.50.0
Condit. Reinf. inactive responses0.30.40.90.60.6-0.90.0
Incentive salience index mean1.62.03.61.91.7-1.20.0
Condit. Reinf. lever presses0.10.20.50.70.4-0.30.0
Condit. Reinf. active minus inactive responses0.40.50.9-1.0-0.9-0.20.0
Condit. Reinf. active-inactive response ratio0.30.40.9-0.9-0.8-0.20.0
Condit. Reinf. active responses0.20.20.5-0.6-0.7-0.20.0
Condit. Reinf. inactive responses0.20.20.50.70.4-0.40.0
Condit. Reinf. lever presses1.62.25.12.31.8-0.70.0
Condit. Reinf. lever reinforcers received0.00.10.2-0.0-0.2-0.40.0
Conditioned reinforcement - actives0.30.51.10.91.10.00.0
Conditioned reinforcement - inactives0.10.10.4-0.7-0.30.20.0
Conditioned locomotion0.40.61.2-1.1-0.90.40.0
Patch foraging indifference point 0 sec1.42.65.6-2.1-2.40.60.0
Patch foraging indifference point AUC0.81.12.7-1.2-1.60.50.0
Delay disc. indifference point, 0s delay0.40.41.10.40.71.00.0
Delay disc. indifference point, 16s delay0.00.00.1-0.1-0.30.20.0
Delay disc. indifference point, 2s delay0.20.20.4-0.5-0.50.60.0
Delay disc. indifference point, 24s delay0.00.00.10.3-0.00.00.0
Delay disc. indifference point, 4s delay0.10.10.20.10.50.00.0
Delay disc. indifference point, 8s delay0.00.00.0-0.20.0-0.00.0
Indifference point function ln k0.10.20.50.20.7-0.50.0
Indifference point function log k0.10.20.50.20.7-0.50.0
Patch foraging total patch changes 0 sec1.42.55.4-2.1-2.30.50.0
Patch foraging total patch changes 12 sec1.41.84.1-1.5-2.00.90.0
Patch foraging total patch changes 18 sec1.01.63.5-1.4-1.9-0.90.0
Patch foraging total patch changes 24 sec0.10.20.4-0.2-0.60.50.0
Patch foraging total patch changes 6 sec1.32.03.5-1.7-1.91.30.0
Patch foraging time to switch 0 sec0.40.81.61.31.20.50.0
Patch foraging water rate 0 sec0.71.42.9-1.7-1.70.20.0
Patch foraging water rate 12 sec0.10.20.4-0.7-0.4-0.30.0
Patch foraging water rate 18 sec0.20.31.1-0.2-0.1-1.00.0
Patch foraging water rate 24 sec0.30.41.4-0.10.0-1.20.0
Patch foraging water rate 6 sec0.81.23.2-0.9-0.8-1.80.0
Seeking ratio, delayed vs. immediate footshock1.31.63.2-1.6-1.80.80.0
Distance traveled before self-admin1.11.55.4-0.3-0.6-2.30.0
Distance traveled after self-admin0.00.00.1-0.1-0.3-0.30.0
Extensor digitorum longus weight0.93.45.52.31.9-2.20.0
Bone: elastic displacement1.11.23.2-1.8-1.3-0.10.0
Bone: elastic work0.50.71.2-1.1-0.7-0.90.0
Bone: endosteal estimation0.10.20.7-0.0-0.2-0.90.0
Bone: endosteal perimeter0.20.41.30.0-0.4-1.20.0
Epididymis fat weight0.93.16.1-2.3-2.5-1.00.0
Delta time in closed arm before/after self-admin0.30.30.8-0.3-0.40.90.0
Delta time in open arm before/after self-admin0.20.20.5-0.30.3-0.70.0
Diff in mean of infusions in LGA sessions0.30.40.91.00.7-0.10.0
Delay discount exponential model param0.10.10.3-0.0-0.1-0.50.0
Extinction: sum of active levers before priming0.30.30.90.50.9-0.20.0
Active lever presses in extinction session 60.00.00.00.1-0.1-0.20.0
Bone: final force1.21.93.01.71.3-1.70.0
Bone: final moment0.60.91.71.10.9-1.30.0
Food consumed during 24 hour testing period0.10.10.4-0.0-0.4-0.70.0
Glucose0.60.92.41.11.60.20.0
Heart weight0.10.10.5-0.30.00.70.0
Delay discount hyperbolic model param0.10.10.4-0.1-0.2-0.60.0
Intermittent access intake day 1-15 change0.51.12.41.31.5-0.10.0
Intermittent access intake escalation0.61.12.61.41.60.10.0
Intermittent access intake escalation 20.40.51.10.81.10.00.0
Intermitt. access day 1 inactive lever presses0.31.04.0-0.2-0.02.00.0
Intermitt. access day 15 inactive lever presses0.00.10.20.40.4-0.20.0
Intermitt. access escalation Index0.20.30.4-0.6-0.60.70.0
Intermittent access day 1 total infusions0.71.14.4-0.3-0.12.10.0
Intermittent access day 15 total infusions0.71.12.00.91.41.20.0
Intermittent access terminal intake (last 3 days)1.11.53.31.41.80.80.0
Intermittent access total infusions0.91.02.31.21.50.70.0
Intermittent access day 1 locomotion1.82.34.2-1.7-1.42.00.0
Intermittent access day 15 total locomotion0.61.12.5-1.3-0.71.60.0
Intermittent access total locomotion0.60.71.9-0.9-0.41.40.0
Intermittent access standard deviation0.10.20.6-0.8-0.50.40.0
Left kidney weight1.15.210.13.22.8-1.60.0
Right kidney weight1.35.910.43.22.9-2.20.0
Cocaine induced anxiety2.02.95.1-2.3-2.01.50.0
Post-drug Anxiety0.91.01.7-1.2-0.91.30.0
Baseline Anxiety0.70.91.91.21.40.00.0
Tail length0.00.00.10.4-0.10.10.0
Length with tail0.00.20.5-0.3-0.7-0.40.0
Length without tail0.20.71.5-1.2-1.20.00.0
Times rat made contact with spout0.60.71.7-0.9-1.30.40.0
Lifetime Intake0.70.91.91.11.40.50.0
Liver weight, left0.20.30.5-0.5-0.70.70.0
Liver weight, right0.20.40.8-0.7-0.90.50.0
Locomotor activity1.21.93.9-1.8-2.0-0.60.0
Locomotor testing distance1.01.83.9-1.8-2.0-0.00.0
Locomotor testing rearing0.30.61.9-0.6-0.6-1.40.0
Locomotion in novel chamber1.21.63.0-1.7-1.70.60.0
Locomotion in novel chamber post-restriction0.91.42.9-1.7-1.70.30.0
Fecal boli incidents, locomotor time 10.40.61.4-1.0-1.20.40.0
Change in fecal boli incidents, locomotor task0.40.40.90.30.71.00.0
Time >=10cm from walls, locomotor time 10.50.61.0-0.9-0.81.00.0
Bouts of movement, locomotor time 10.70.82.7-0.5-0.41.70.0
Total resting periods, locomotor time 10.50.62.3-0.3-0.11.50.0
Rest time, locomotor task time 11.11.35.3-0.10.12.30.0
Distance moved, locomotor task time 10.30.41.5-0.4-0.2-1.20.0
Vertical activity count, locomotor time 10.61.34.4-0.6-0.8-2.10.0
Time >=10cm from walls, locomotor time 20.10.10.40.20.6-0.20.0
Bouts of movement, locomotor time 20.30.51.11.00.90.10.0
Total resting periods, locomotor time 20.40.61.41.21.10.20.0
Rest time, locomotor task time 20.40.51.00.70.71.00.0
Distance moved, locomotor task time 20.91.02.5-1.1-0.7-1.60.0
Vertical activity count, locomotor time 20.81.02.0-1.1-1.0-1.40.0
Light reinforcement 10.92.24.9-1.7-2.2-1.00.0
Light reinforcement 21.01.53.4-1.5-1.8-0.30.0
Bone: marrow area0.10.20.7-0.0-0.2-0.80.0
Bone: maximum diameter0.20.40.7-0.6-0.8-0.80.0
Bone: maximum force0.40.71.60.90.8-1.30.0
Bone: maximum moment0.10.20.70.40.3-0.80.0
Mean time between licks in bursts0.10.31.20.10.1-1.10.0
Mean num. licks in bursts0.30.51.70.30.2-1.30.0
Cd content in liver0.10.10.30.10.3-0.6-0.2
Co content in liver0.40.51.80.10.3-1.4-0.1
Cu content in liver0.60.81.21.11.0-0.30.9
Fe content in liver1.61.92.6-1.6-1.60.1-1.6
K content in liver0.10.10.3-0.10.30.50.4
Mg content in liver0.60.61.0-0.9-0.71.0-0.6
Mn content in liver0.70.71.0-1.0-0.91.0-0.5
Na content in liver0.30.31.0-1.0-0.00.50.3
Rb content in liver0.30.30.70.90.50.30.4
Se content in liver1.31.55.30.60.5-2.30.0
Sr content in liver0.50.51.0-0.4-1.00.3-0.8
Zn content in liver1.92.13.41.21.6-1.91.0
Bone: minimum diameter0.20.31.1-0.3-0.4-1.00.0
Time in familiar zone, hab. session 10.20.20.5-0.7-0.40.00.0
Time in novel zone, hab. session 10.10.10.20.50.4-0.40.0
Total zone transitions, hab. session 10.60.91.4-0.9-1.21.20.0
Total locomotion distance, hab. session 10.50.61.6-0.9-1.30.30.0
Locomotion velocity, hab. session 10.60.92.1-1.0-1.50.80.0
Time in familiar zone, hab. session 20.60.61.5-1.2-0.90.10.0
Time in novel zone, hab. session 22.22.24.62.02.1-0.50.0
Total zone transitions, hab. session 21.21.63.2-1.2-1.81.30.0
Total locomotion distance, hab. session 20.40.61.6-0.8-1.30.30.0
Locomotion velocity, hab. session 20.40.51.6-0.6-1.30.30.0
Novel to familiar place preference ratio0.80.92.11.11.50.60.0
Novelty place preference1.31.43.31.41.80.60.0
Time in novel zone, NPP test1.21.23.01.31.70.40.0
Total zone transitions, NPP test0.91.22.8-1.2-1.70.80.0
Total locomotion distance, NPP test0.30.41.3-0.6-1.1-0.10.0
Locomotion velocity, NPP test0.20.31.1-0.5-1.0-0.20.0
Intraocular pressure0.81.22.51.30.9-1.60.0
Delta distance traveled before/after self-admin0.50.51.80.30.51.30.0
Delta ambulatory time before/after self-admin0.70.82.50.50.71.60.0
Parametrial fat weight3.78.716.7-4.1-4.11.20.0
Pavlov. Cond. lever latency0.10.10.3-0.6-0.20.30.0
Pavlov. Cond. magazine entry latency1.11.42.51.60.9-1.50.0
Pavlov. Cond. change in total contacts0.60.61.61.30.9-0.10.0
Pavlov. Cond. index score0.60.82.01.40.7-0.80.0
Pavlov. Cond. latency score0.50.71.61.30.6-0.80.0
Pavlov. Cond. lever contacts0.40.51.31.10.7-0.40.0
Pavlov. Cond. magazine entry number1.01.22.1-1.5-1.01.40.0
Pavlov. Cond. intertrial magazine entries0.40.51.7-0.5-0.3-1.30.0
Pavlov. Cond. lever-magazine prob. diff.0.60.82.01.40.7-0.70.0
Pavlov. Cond. response bias0.50.61.31.10.6-0.80.0
Pavlov. Cond. lever latency1.01.42.7-1.6-1.40.90.0
Pavlov. Cond. magazine entry latency2.73.35.82.42.2-1.60.0
Pavlov. Cond. change in total contacts2.13.45.32.31.9-2.20.0
Pavlov. Cond. index score2.63.46.52.62.2-1.50.0
Pavlov. Cond. latency score2.43.26.42.52.2-1.20.0
Pavlov. Cond. lever contacts1.41.93.81.91.6-1.20.0
Pavlov. Cond. magazine entry number4.05.08.8-3.0-2.71.90.0
Pavlov. Cond. intertrial magazine entries2.13.16.7-2.4-2.6-0.10.0
Pavlov. Cond. lever-magazine prob. diff.2.93.87.02.62.4-1.60.0
Pavlov. Cond. response bias2.73.66.12.52.2-1.90.0
Time in closed arm before self-admin2.33.04.4-2.0-2.11.80.0
Time in closed arm after self-admin2.72.94.3-1.8-2.12.10.0
Time in open arm before self-admin2.62.85.11.91.6-2.30.0
Time in open arm after self-admin1.61.75.20.71.1-2.30.0
Bone: periosteal estimation0.30.72.3-0.3-0.5-1.50.0
Bone: periosteal perimeter0.40.61.4-0.5-0.9-1.20.0
Bone: post-yield work0.50.71.1-1.1-0.90.90.0
Progressive ratio test 1 active lever presses1.72.14.12.01.9-0.60.0
Progressive ratio test 1 breakpoint1.51.93.71.91.8-0.60.0
Progressive ratio test 1 inactive lever presses0.30.41.5-0.10.11.20.0
Progressive ratio test 2 active lever presses0.81.02.11.21.40.70.0
Progressive ratio test 2 breakpoint0.91.02.21.21.50.70.0
Progressive ratio test 2 inactive lever presses0.10.10.4-0.10.30.60.0
Incentive Sensitization - Responses0.40.61.70.50.71.30.0
Incentive Sensitization - Breakpoint0.50.71.90.50.81.40.0
Sum of active levers in priming session hrs 5-60.20.20.30.50.6-0.50.0
Progressive ratio0.60.92.70.90.2-1.70.0
Food seeking constrained by brief footshock1.01.22.21.51.4-0.70.0
Seeking ratio, punishment vs. effort0.20.30.70.20.80.80.0
Retroperitoneal fat weight3.213.627.5-5.1-5.20.80.0
Reaction time number correct0.50.92.01.21.4-0.20.0
Reaction time mean minus median0.61.52.81.71.2-1.30.0
Reaction time mean minus median AUC0.61.62.81.71.1-1.50.0
Reaction time num false alarms0.10.20.70.00.30.80.0
Reaction time num false alarms AUC0.20.20.9-0.3-0.10.90.0
Reaction time trials correct on left0.50.92.01.21.4-0.20.0
Reaction time trials on left0.50.92.11.31.4-0.30.0
Reaction time mean0.20.31.00.50.3-1.00.0
Reaction time mean AUC0.20.30.60.60.5-0.70.0
Median of all reaction times0.10.10.4-0.0-0.1-0.70.0
Reaction time omissions0.20.30.80.5-0.2-0.90.0
Reaction time false alarm rate0.40.60.9-0.9-0.80.90.0
Reaction time premature initiation rate1.11.52.51.61.4-1.20.0
Reaction time premature initiations1.52.74.82.22.1-1.30.0
Std. dev. reaction times0.30.61.30.80.6-1.10.0
Reaction time trials completed0.50.92.11.31.4-0.30.0
Reaction time trials AUC0.51.02.11.31.5-0.40.0
Run reversals in cocaine runway, females1.11.12.5-1.6-1.3-0.20.0
Run reversals in cocaine runway, males0.20.20.4-0.5-0.7-0.20.0
Latency to leave start box in cocaine runway0.10.10.2-0.00.40.30.0
Latency to leave start box in cocaine runway, F0.60.61.40.31.01.20.0
Latency to leave start box in cocaine runway, M0.50.40.7-0.5-0.8-0.90.0
Std. dev. time between licks in bursts0.81.12.2-1.3-1.5-0.70.0
Total sessions with >9 infusions0.91.11.91.31.4-1.00.0
Short access day 1 total inactive lever presses0.00.00.1-0.3-0.1-0.20.0
Short access day 10 total inactive lever presses0.20.40.8-0.6-0.60.90.0
Short access day 1 total infusions0.10.10.30.30.50.20.0
Short access day 10 total infusions0.20.30.80.40.50.90.0
Short access total infusions0.81.02.01.41.40.10.0
Short access day 1 locomotion0.10.10.20.40.4-0.30.0
Short access day 10 total locomotion1.01.83.7-1.9-1.70.80.0
Short access total locomotion0.30.30.7-0.8-0.60.50.0
One hour access (0.3 mA shock)0.60.71.11.01.01.00.0
Compulsive drug intake0.20.20.8-0.2-0.3-0.90.0
One hour access (shock baseline)0.71.12.70.71.01.70.0
Social response proportion0.30.30.60.60.80.40.0
Social responses0.00.10.20.10.1-0.40.0
Social time0.10.10.30.00.2-0.50.0
Soleus weight0.10.30.5-0.5-0.7-0.70.0
Bone: stiffness2.43.97.82.82.4-1.50.0
Tibialis anterior weight0.31.22.61.60.9-1.10.0
Time to tail flick, vehicle, before self-admin0.20.20.40.60.70.20.0
Time to tail flick, vehicle, after self-admin0.60.91.4-1.2-1.10.90.0
Time to tail flick, test, before self-admin2.02.03.7-1.5-1.91.50.0
Time to tail flick, test, after self-admin0.00.00.10.1-0.2-0.00.0
Delta time to tail flick, vehicle, before/after SA0.40.40.8-0.8-0.9-0.40.0
Delta time to tail flick, test, before/after SA1.31.31.91.31.2-1.40.0
Tibia length0.00.10.30.50.2-0.20.0
Ambulatory time before self-admin1.01.54.6-0.6-0.9-2.10.0
Ambulatory time after self-admin0.10.10.3-0.4-0.5-0.40.0
Bone: tissue strength0.50.51.9-0.30.31.40.0
Total heroin consumption0.40.51.10.81.00.40.0
Bone: trabecular number0.10.20.5-0.6-0.70.20.0
Bone: trabecular spacing0.00.00.1-0.3-0.2-0.10.0
Bone: trabecular thickness0.50.60.91.00.8-0.80.0
Bone: trabecular tissue density0.30.50.80.90.90.50.0
Water consumed over 24 hours0.20.20.4-0.3-0.70.60.0
Number of responses in last shaping day0.90.91.71.01.0-1.30.0