Pan2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Pan2 0.04 0.03 3.4e-04 0.02 0.02 0.02 0.02 1.1e-03 1.1e-03 1.7e-03 1.9e-03
2 Brain gene expression Pan2 0.04 0.03 2.1e-03 0.02 0.02 0.02 0.02 2.7e-03 4.5e-03 6.9e-03 7.0e-03
3 NAcc gene expression Pan2 0.05 0.04 9.6e-05 0.03 0.02 0 0.02 1.1e-04 1.7e-03 1.2e-01 1.1e-03
4 PL intron excision ratio chr7_741761_742069 0.04 0.04 5.2e-03 0.01 0.02 0.02 0.02 6.1e-02 1.8e-03 3.1e-03 3.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.06.5-0.21.00.92.5
Area under the delay curve0.10.10.30.00.60.20.4
BMI with tail6.721.728.35.35.25.22.4
BMI without tail1.22.43.61.91.81.70.3
Body weight1.14.66.12.52.42.30.9
Weight adjusted by age0.10.10.40.1-0.1-0.2-0.7
Bone surface2.03.512.6-0.70.50.83.5
Bone volume2.33.913.5-0.40.91.13.7
Breakpoint value in progressive ratio session2.32.53.1-1.6-1.8-1.7-1.2
Number of licking bursts2.32.74.52.11.81.7-0.2
Context. condit. distance diff. score0.10.20.30.50.40.50.1
Locomotion velocity, session 10.70.81.90.10.80.61.4
Locomotion distance, session 10.50.62.2-0.50.10.11.5
Locomotion velocity, session 20.91.11.8-1.3-0.8-0.61.3
Locomotion distance, session 21.52.04.3-2.1-1.0-1.50.8
Locomotion velocity, session 34.45.26.5-2.5-2.5-2.5-1.3
Locomotion distance, session 30.10.10.2-0.3-0.3-0.4-0.4
Stereotopy head waving bouts, day 34.55.37.6-2.8-2.6-2.5-0.6
Stereotopy head waving duration, day 33.03.65.5-2.2-2.3-1.9-0.4
Locomotion velocity, session 70.10.10.2-0.3-0.3-0.10.4
Locomotion distance, session 70.10.10.50.3-0.0-0.0-0.7
Stereotopy head waving bouts, day 70.50.61.1-1.1-0.5-0.60.7
Stereotopy head waving duration, day 70.40.51.0-1.0-0.3-0.51.0
Locomotion velocity, session 80.80.91.9-1.4-0.3-0.71.1
Locomotion distance, session 80.20.30.6-0.8-0.3-0.60.1
Degree of sensitization distance0.50.50.70.80.80.80.5
Degree of sensitization stereotypy0.40.40.90.20.70.51.0
Conditioned locomotion0.70.81.41.20.70.6-1.0
Cocaine response after cond. corrected1.21.42.91.70.91.2-0.7
Cocaine response after cond. not corrected1.31.53.01.71.01.2-0.8
Cocaine response before conditioning0.30.30.7-0.8-0.6-0.60.1
Saline control response0.30.40.60.80.70.7-0.1
Bone: connectivity density0.71.13.6-0.20.60.61.9
Bone: cortical apparent density1.21.62.11.51.41.40.6
Bone: cortical area1.82.74.91.11.31.82.2
Bone: cortical porosity0.10.20.5-0.1-0.10.20.7
Bone: cortical porosity0.60.61.70.20.40.71.3
Bone: cortical thickness1.72.93.81.61.61.91.6
Bone: cortical thickness0.60.61.21.10.80.9-0.0
Bone: cortical tissue density0.91.11.51.21.21.20.5
Condit. Reinf. active minus inactive responses1.71.92.8-1.6-1.7-1.5-0.5
Condit. Reinf. active-inactive response ratio0.40.50.8-0.5-0.9-0.6-0.7
Condit. Reinf. active responses2.02.54.1-2.0-1.8-1.60.1
Condit. Reinf. inactive responses0.91.12.1-1.4-0.9-1.00.6
Incentive salience index mean0.91.01.9-1.4-1.1-1.00.3
Condit. Reinf. lever presses0.50.72.2-0.70.3-0.11.5
Condit. Reinf. active minus inactive responses2.63.24.4-1.5-2.1-1.8-1.6
Condit. Reinf. active-inactive response ratio1.71.83.6-0.6-1.3-1.3-1.9
Condit. Reinf. active responses1.31.83.1-1.4-1.8-1.3-0.7
Condit. Reinf. inactive responses0.20.30.4-0.7-0.6-0.20.5
Condit. Reinf. lever presses2.83.84.4-1.9-2.1-2.1-1.7
Condit. Reinf. lever reinforcers received1.11.62.5-1.2-1.6-1.2-0.9
Conditioned reinforcement - actives0.20.20.8-0.10.30.30.9
Conditioned reinforcement - inactives0.80.91.81.30.91.0-0.2
Conditioned locomotion1.82.23.4-1.7-1.8-1.5-0.2
Patch foraging indifference point 0 sec3.65.87.72.62.42.81.7
Patch foraging indifference point AUC0.60.70.9-0.9-0.7-1.0-0.6
Delay disc. indifference point, 0s delay2.73.04.31.02.11.62.1
Delay disc. indifference point, 16s delay0.20.20.3-0.5-0.5-0.5-0.1
Delay disc. indifference point, 2s delay0.50.50.80.30.90.60.9
Delay disc. indifference point, 24s delay0.40.41.10.51.10.40.3
Delay disc. indifference point, 4s delay0.20.30.5-0.7-0.0-0.30.7
Delay disc. indifference point, 8s delay0.10.10.40.30.40.0-0.6
Indifference point function ln k0.10.20.40.50.00.60.3
Indifference point function log k0.10.20.40.50.00.60.3
Patch foraging total patch changes 0 sec3.25.26.92.52.32.61.5
Patch foraging total patch changes 12 sec1.31.72.71.71.51.3-0.0
Patch foraging total patch changes 18 sec0.00.00.10.20.20.10.1
Patch foraging total patch changes 24 sec0.70.91.40.81.20.90.7
Patch foraging total patch changes 6 sec1.72.63.71.81.51.91.0
Patch foraging time to switch 0 sec0.50.81.50.51.20.70.9
Patch foraging water rate 0 sec0.30.41.01.00.30.6-0.5
Patch foraging water rate 12 sec0.40.61.51.20.40.9-0.5
Patch foraging water rate 18 sec1.01.44.20.2-1.0-0.5-2.1
Patch foraging water rate 24 sec1.11.63.71.50.20.6-1.9
Patch foraging water rate 6 sec1.21.72.8-0.6-1.7-1.0-1.7
Seeking ratio, delayed vs. immediate footshock0.91.01.6-1.3-1.2-0.80.4
Distance traveled before self-admin0.80.81.3-1.1-1.1-0.9-0.2
Distance traveled after self-admin0.10.10.2-0.5-0.4-0.30.2
Extensor digitorum longus weight4.216.625.15.04.74.40.7
Bone: elastic displacement0.00.00.1-0.0-0.20.00.3
Bone: elastic work0.81.11.30.91.11.11.1
Bone: endosteal estimation0.81.72.31.11.01.51.5
Bone: endosteal perimeter0.20.51.2-0.7-0.6-0.11.1
Epididymis fat weight0.10.30.4-0.4-0.5-0.7-0.6
Delta time in closed arm before/after self-admin0.90.92.51.0-0.20.3-1.6
Delta time in open arm before/after self-admin1.81.73.61.11.91.20.8
Diff in mean of infusions in LGA sessions2.12.33.5-1.6-1.9-1.6-0.9
Delay discount exponential model param0.10.10.20.0-0.5-0.1-0.2
Extinction: sum of active levers before priming4.24.25.1-1.7-2.0-2.3-2.1
Active lever presses in extinction session 60.80.81.5-1.2-0.7-1.1-0.3
Bone: final force3.65.86.82.12.62.62.3
Bone: final moment3.45.66.52.02.52.62.3
Food consumed during 24 hour testing period0.40.50.60.80.80.70.4
Glucose1.62.43.21.81.71.70.7
Heart weight0.00.10.10.2-0.3-0.1-0.3
Delay discount hyperbolic model param0.20.20.5-0.2-0.7-0.3-0.4
Intermittent access intake day 1-15 change0.40.41.2-0.4-1.1-0.4-0.4
Intermittent access intake escalation0.80.81.5-0.1-1.2-0.5-1.2
Intermittent access intake escalation 21.61.53.0-0.6-1.7-1.0-1.3
Intermitt. access day 1 inactive lever presses0.50.51.4-0.0-0.7-0.5-1.2
Intermitt. access day 15 inactive lever presses1.41.62.8-0.8-1.7-1.2-1.2
Intermitt. access escalation Index0.60.51.8-0.2-0.00.41.3
Intermittent access day 1 total infusions0.70.91.90.61.40.80.7
Intermittent access day 15 total infusions0.10.20.20.50.50.40.0
Intermittent access terminal intake (last 3 days)0.40.50.70.50.70.80.8
Intermittent access total infusions0.60.61.10.71.10.80.4
Intermittent access day 1 locomotion0.10.10.40.10.6-0.0-0.1
Intermittent access day 15 total locomotion0.20.30.3-0.5-0.6-0.5-0.4
Intermittent access total locomotion0.10.10.3-0.50.2-0.4-0.1
Intermittent access standard deviation0.20.20.6-0.2-0.8-0.3-0.5
Left kidney weight0.41.02.90.20.60.81.7
Right kidney weight0.20.50.9-0.8-0.9-0.50.5
Cocaine induced anxiety1.01.22.2-1.5-1.1-1.10.5
Post-drug Anxiety0.60.62.0-0.7-0.1-0.11.4
Baseline Anxiety0.00.00.10.1-0.20.0-0.3
Tail length4.513.716.7-3.9-4.0-4.1-2.6
Length with tail1.45.06.9-2.6-2.4-2.5-1.0
Length without tail0.30.61.40.30.60.71.2
Times rat made contact with spout0.70.81.41.21.00.9-0.2
Lifetime Intake1.51.72.41.11.51.41.1
Liver weight, left1.01.73.01.71.21.40.2
Liver weight, right0.91.52.11.31.21.40.8
Locomotor activity2.23.56.2-2.5-2.1-1.9-0.1
Locomotor testing distance0.91.42.4-1.5-1.4-1.1-0.0
Locomotor testing rearing0.00.10.20.0-0.2-0.1-0.5
Locomotion in novel chamber0.20.20.40.60.40.60.3
Locomotion in novel chamber post-restriction3.13.74.7-2.2-2.1-2.1-1.0
Fecal boli incidents, locomotor time 10.40.50.80.90.60.4-0.7
Change in fecal boli incidents, locomotor task0.50.51.0-0.8-0.4-0.31.0
Time >=10cm from walls, locomotor time 11.21.21.90.71.21.11.4
Bouts of movement, locomotor time 10.50.50.7-0.7-0.8-0.7-0.5
Total resting periods, locomotor time 11.01.01.4-1.2-1.1-1.1-0.6
Rest time, locomotor task time 10.30.30.6-0.8-0.4-0.60.0
Distance moved, locomotor task time 11.21.42.20.81.11.11.5
Vertical activity count, locomotor time 10.90.91.51.20.81.20.4
Time >=10cm from walls, locomotor time 20.80.91.51.21.01.00.0
Bouts of movement, locomotor time 20.30.30.6-0.6-0.3-0.20.8
Total resting periods, locomotor time 20.30.31.0-0.6-0.2-0.11.0
Rest time, locomotor task time 20.20.20.6-0.30.30.00.8
Distance moved, locomotor task time 20.10.20.60.3-0.0-0.0-0.7
Vertical activity count, locomotor time 20.90.91.81.30.90.9-0.7
Light reinforcement 12.95.37.8-2.7-2.8-2.4-0.7
Light reinforcement 20.91.11.8-1.2-1.4-1.1-0.3
Bone: marrow area0.71.52.11.11.01.41.4
Bone: maximum diameter0.40.72.2-0.7-0.50.01.5
Bone: maximum force3.56.17.52.32.62.72.3
Bone: maximum moment3.45.97.32.22.52.72.3
Mean time between licks in bursts1.01.52.1-1.1-1.4-1.2-1.1
Mean num. licks in bursts0.50.61.1-1.0-0.9-0.8-0.0
Cd content in liver0.30.30.60.60.70.40.2
Co content in liver1.41.72.0-1.2-1.3-1.4-1.2
Cu content in liver1.72.13.71.11.11.51.9
Fe content in liver0.40.40.70.80.80.6-0.2
K content in liver0.30.30.6-0.8-0.4-0.30.7
Mg content in liver0.30.30.9-0.70.0-0.20.9
Mn content in liver1.21.34.7-0.80.20.22.2
Na content in liver0.30.30.60.20.60.50.7
Rb content in liver1.31.63.20.80.81.31.8
Se content in liver0.00.00.1-0.30.1-0.20.1
Sr content in liver0.90.81.8-0.3-1.0-0.5-1.3
Zn content in liver3.33.76.1-1.3-1.8-2.0-2.5
Bone: minimum diameter0.61.12.50.50.71.01.6
Time in familiar zone, hab. session 15.24.96.2-2.3-2.3-2.5-1.7
Time in novel zone, hab. session 14.74.65.31.92.22.32.2
Total zone transitions, hab. session 10.30.51.0-0.9-0.1-0.41.0
Total locomotion distance, hab. session 11.11.62.9-1.7-0.7-0.91.4
Locomotion velocity, hab. session 11.11.63.1-1.8-1.0-1.11.0
Time in familiar zone, hab. session 25.75.97.5-2.3-2.7-2.6-2.0
Time in novel zone, hab. session 26.66.67.82.32.82.82.3
Total zone transitions, hab. session 21.41.94.30.61.21.22.1
Total locomotion distance, hab. session 20.30.40.9-0.7-0.1-0.30.9
Locomotion velocity, hab. session 20.40.51.5-0.8-0.0-0.31.2
Novel to familiar place preference ratio4.04.14.71.62.12.12.2
Novelty place preference2.82.93.81.31.71.71.9
Time in novel zone, NPP test3.43.53.91.61.92.02.0
Total zone transitions, NPP test0.60.91.40.51.20.81.1
Total locomotion distance, NPP test0.40.61.60.00.70.41.3
Locomotion velocity, NPP test0.20.31.1-0.30.40.11.0
Intraocular pressure1.01.42.9-0.7-1.0-1.1-1.7
Delta distance traveled before/after self-admin0.10.10.20.20.40.30.3
Delta ambulatory time before/after self-admin0.30.30.60.20.60.40.8
Parametrial fat weight0.10.20.2-0.2-0.4-0.4-0.5
Pavlov. Cond. lever latency0.30.31.10.3-0.1-0.1-1.1
Pavlov. Cond. magazine entry latency1.62.12.7-1.5-1.6-1.6-1.0
Pavlov. Cond. change in total contacts0.10.10.20.40.30.40.4
Pavlov. Cond. index score0.30.40.8-0.9-0.5-0.60.4
Pavlov. Cond. latency score0.40.50.8-0.9-0.5-0.50.7
Pavlov. Cond. lever contacts0.50.51.8-0.30.50.21.3
Pavlov. Cond. magazine entry number0.50.60.90.90.80.90.4
Pavlov. Cond. intertrial magazine entries0.30.41.0-0.1-0.6-0.4-1.0
Pavlov. Cond. lever-magazine prob. diff.0.40.51.0-1.0-0.7-0.70.3
Pavlov. Cond. response bias0.70.81.1-1.1-0.9-1.0-0.4
Pavlov. Cond. lever latency1.21.62.41.61.21.40.7
Pavlov. Cond. magazine entry latency1.82.13.2-1.8-1.5-1.7-0.6
Pavlov. Cond. change in total contacts0.60.81.1-1.0-1.0-0.9-0.6
Pavlov. Cond. index score1.72.23.0-1.7-1.6-1.6-0.8
Pavlov. Cond. latency score1.62.03.2-1.8-1.5-1.6-0.6
Pavlov. Cond. lever contacts1.21.72.0-1.4-1.3-1.4-1.0
Pavlov. Cond. magazine entry number1.72.03.01.71.61.60.5
Pavlov. Cond. intertrial magazine entries0.60.81.41.20.91.0-0.2
Pavlov. Cond. lever-magazine prob. diff.1.72.23.2-1.8-1.6-1.6-0.7
Pavlov. Cond. response bias2.02.83.3-1.8-1.8-1.8-1.2
Time in closed arm before self-admin0.80.91.70.21.10.71.3
Time in closed arm after self-admin0.20.30.50.60.10.70.4
Time in open arm before self-admin0.70.82.2-0.4-1.5-0.5-0.6
Time in open arm after self-admin0.80.91.41.21.20.90.0
Bone: periosteal estimation1.73.66.11.31.52.02.5
Bone: periosteal perimeter0.60.93.20.00.20.71.8
Bone: post-yield work0.30.40.70.80.60.80.4
Progressive ratio test 1 active lever presses1.81.93.61.31.91.30.5
Progressive ratio test 1 breakpoint2.02.14.01.42.01.40.7
Progressive ratio test 1 inactive lever presses0.10.10.30.1-0.10.40.5
Progressive ratio test 2 active lever presses0.70.81.00.81.01.00.6
Progressive ratio test 2 breakpoint0.50.50.90.40.70.81.0
Progressive ratio test 2 inactive lever presses0.60.70.90.60.80.91.0
Incentive Sensitization - Responses0.10.10.3-0.3-0.6-0.20.0
Incentive Sensitization - Breakpoint0.20.20.4-0.4-0.6-0.20.2
Sum of active levers in priming session hrs 5-60.40.40.6-0.6-0.8-0.6-0.4
Progressive ratio0.91.11.71.31.01.20.3
Food seeking constrained by brief footshock1.62.02.7-1.6-1.4-1.7-0.9
Seeking ratio, punishment vs. effort2.22.73.7-1.9-1.6-1.9-0.9
Retroperitoneal fat weight1.96.29.33.02.72.70.8
Reaction time number correct0.50.71.61.30.60.8-0.5
Reaction time mean minus median1.11.52.3-1.5-1.2-1.3-0.5
Reaction time mean minus median AUC0.91.22.5-1.6-0.8-1.00.8
Reaction time num false alarms0.40.61.01.00.90.80.1
Reaction time num false alarms AUC0.50.61.21.10.90.8-0.3
Reaction time trials correct on left0.50.71.61.30.60.8-0.5
Reaction time trials on left0.50.71.51.20.60.8-0.5
Reaction time mean0.71.02.1-1.4-0.8-1.20.3
Reaction time mean AUC0.30.40.9-1.0-0.3-0.70.5
Median of all reaction times0.40.51.0-1.0-0.4-0.80.4
Reaction time omissions0.00.10.2-0.0-0.00.10.5
Reaction time false alarm rate0.20.20.50.40.70.40.3
Reaction time premature initiation rate1.82.42.8-1.3-1.6-1.6-1.7
Reaction time premature initiations1.41.94.0-0.6-1.3-1.2-2.0
Std. dev. reaction times0.50.71.4-1.2-0.7-0.90.2
Reaction time trials completed0.50.71.51.20.60.8-0.5
Reaction time trials AUC0.50.81.71.30.60.8-0.7
Run reversals in cocaine runway, females1.41.42.2-1.5-1.3-1.3-0.1
Run reversals in cocaine runway, males1.71.72.8-1.7-1.5-1.30.0
Latency to leave start box in cocaine runway1.01.12.50.21.10.81.6
Latency to leave start box in cocaine runway, F1.71.94.80.21.31.02.2
Latency to leave start box in cocaine runway, M0.20.20.70.2-0.1-0.1-0.8
Std. dev. time between licks in bursts0.50.60.8-0.8-0.8-0.30.9
Total sessions with >9 infusions1.61.73.80.51.11.32.0
Short access day 1 total inactive lever presses0.10.10.10.1-0.10.30.4
Short access day 10 total inactive lever presses0.20.20.50.2-0.6-0.1-0.7
Short access day 1 total infusions2.42.65.00.91.21.82.2
Short access day 10 total infusions1.11.21.71.01.31.20.9
Short access total infusions3.23.64.31.42.02.02.1
Short access day 1 locomotion0.20.20.6-0.20.40.20.8
Short access day 10 total locomotion1.71.92.9-1.2-1.7-1.4-1.1
Short access total locomotion0.10.10.2-0.40.1-0.20.3
One hour access (0.3 mA shock)0.40.50.70.70.80.80.4
Compulsive drug intake0.20.20.40.40.70.50.3
One hour access (shock baseline)0.10.10.20.40.00.2-0.3
Social response proportion0.60.61.2-1.1-0.8-0.90.0
Social responses6.48.313.5-3.7-3.0-3.2-0.7
Social time0.71.01.61.31.01.10.1
Soleus weight5.415.920.84.64.54.41.8
Bone: stiffness4.97.79.82.82.93.12.2
Tibialis anterior weight1.13.95.62.22.42.10.9
Time to tail flick, vehicle, before self-admin1.31.31.8-1.3-1.3-0.61.3
Time to tail flick, vehicle, after self-admin0.80.91.5-0.4-1.1-0.8-1.2
Time to tail flick, test, before self-admin0.60.61.1-1.1-0.6-0.60.8
Time to tail flick, test, after self-admin0.30.31.0-0.3-0.00.11.0
Delta time to tail flick, vehicle, before/after SA1.00.92.21.00.70.2-1.5
Delta time to tail flick, test, before/after SA0.40.30.8-0.2-0.4-0.5-0.9
Tibia length0.92.63.5-1.8-1.5-1.9-1.2
Ambulatory time before self-admin0.30.30.5-0.6-0.7-0.5-0.1
Ambulatory time after self-admin0.00.00.1-0.2-0.0-0.00.2
Bone: tissue strength4.44.25.52.22.12.31.5
Total heroin consumption1.82.23.3-1.8-1.5-1.7-0.4
Bone: trabecular number0.50.71.6-1.1-0.2-0.41.2
Bone: trabecular spacing1.11.44.90.7-0.5-0.3-2.2
Bone: trabecular thickness3.23.812.0-0.01.21.43.5
Bone: trabecular tissue density4.46.39.73.12.72.80.5
Water consumed over 24 hours1.41.72.71.01.31.31.7
Number of responses in last shaping day0.60.60.9-0.9-1.0-0.8-0.2