Osr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain alternative TSS NM_001106716.3 0.02 0.02 5.1e-03 0.03 0.02 0.02 0.02 2.0e-03 2.3e-03 3.2e-03 3.4e-03
2 Brain isoform ratio XM_039111941.2 0.03 0.02 4.0e-03 0.03 0.03 0.03 0.03 1.0e-03 1.7e-03 1.4e-03 2.1e-03
3 Brain alternative TSS NM_001106716.3 0.02 0.02 6.6e-03 0.03 0.02 0.02 0.02 1.3e-03 3.3e-03 3.4e-03 2.9e-03
4 Brain intron excision ratio chr6_38093287_38097653 0.05 0.03 9.5e-04 0.04 0.02 0.04 0.03 8.4e-05 2.3e-03 2.7e-04 4.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.32.26.1-1.01.0-1.0-2.5
Area under the delay curve0.00.00.0-0.00.0-0.0-0.2
BMI with tail0.41.52.71.0-1.01.0-1.7
BMI without tail0.92.83.71.9-1.91.9-0.4
Body weight0.62.52.81.7-1.71.7-1.2
Weight adjusted by age0.50.81.0-0.90.9-0.91.0
Bone surface2.24.010.1-1.41.4-1.4-3.2
Bone volume2.34.011.9-1.21.2-1.2-3.4
Breakpoint value in progressive ratio session0.50.60.70.9-0.90.9-0.1
Number of licking bursts0.10.20.60.0-0.00.00.8
Context. condit. distance diff. score0.10.20.20.4-0.40.40.0
Locomotion velocity, session 10.40.50.50.7-0.70.7-0.7
Locomotion distance, session 10.40.62.2-0.10.1-0.11.5
Locomotion velocity, session 20.50.60.70.9-0.90.90.3
Locomotion distance, session 20.30.50.60.8-0.80.80.2
Locomotion velocity, session 30.00.10.20.0-0.00.0-0.5
Locomotion distance, session 30.91.01.01.0-1.01.01.0
Stereotopy head waving bouts, day 31.31.51.9-1.21.2-1.2-1.4
Stereotopy head waving duration, day 31.61.93.4-1.21.2-1.2-1.8
Locomotion velocity, session 70.50.60.60.8-0.80.80.7
Locomotion distance, session 70.40.50.60.8-0.80.80.4
Stereotopy head waving bouts, day 71.72.02.1-1.51.5-1.5-1.2
Stereotopy head waving duration, day 72.63.23.6-1.91.9-1.9-1.3
Locomotion velocity, session 83.44.15.52.3-2.32.30.1
Locomotion distance, session 80.91.31.61.3-1.31.30.7
Degree of sensitization distance0.00.00.00.0-0.00.0-0.0
Degree of sensitization stereotypy1.01.11.4-1.21.2-1.2-0.4
Conditioned locomotion0.10.10.30.2-0.20.20.6
Cocaine response after cond. corrected0.30.30.4-0.70.7-0.7-0.1
Cocaine response after cond. not corrected1.11.21.7-1.31.3-1.3-0.0
Cocaine response before conditioning2.53.03.8-2.02.0-2.0-0.7
Saline control response0.50.60.6-0.80.8-0.8-0.8
Bone: connectivity density1.42.25.3-1.11.1-1.1-2.3
Bone: cortical apparent density1.62.32.71.6-1.61.6-1.0
Bone: cortical area1.01.62.8-1.11.1-1.1-1.7
Bone: cortical porosity4.34.75.8-2.42.4-2.4-1.2
Bone: cortical porosity3.43.74.4-2.12.1-2.1-1.2
Bone: cortical thickness0.50.82.2-0.60.6-0.6-1.5
Bone: cortical thickness0.10.20.3-0.30.3-0.3-0.6
Bone: cortical tissue density2.12.83.41.9-1.91.9-0.9
Condit. Reinf. active minus inactive responses0.10.10.10.3-0.30.3-0.3
Condit. Reinf. active-inactive response ratio0.50.60.80.9-0.90.90.1
Condit. Reinf. active responses0.10.20.2-0.40.4-0.4-0.3
Condit. Reinf. inactive responses0.20.20.3-0.50.5-0.5-0.4
Incentive salience index mean0.00.00.00.2-0.20.20.1
Condit. Reinf. lever presses0.20.30.4-0.60.6-0.60.4
Condit. Reinf. active minus inactive responses0.40.60.8-0.70.7-0.7-0.9
Condit. Reinf. active-inactive response ratio0.70.81.0-1.01.0-1.00.0
Condit. Reinf. active responses0.20.30.60.4-0.40.4-0.8
Condit. Reinf. inactive responses0.70.90.91.0-1.01.0-0.8
Condit. Reinf. lever presses0.20.20.3-0.60.6-0.6-0.0
Condit. Reinf. lever reinforcers received0.10.20.30.3-0.30.3-0.6
Conditioned reinforcement - actives0.10.10.20.4-0.40.40.3
Conditioned reinforcement - inactives0.10.20.2-0.50.5-0.5-0.1
Conditioned locomotion0.00.00.00.1-0.10.1-0.2
Patch foraging indifference point 0 sec0.50.93.50.1-0.10.11.9
Patch foraging indifference point AUC0.10.20.2-0.40.4-0.4-0.3
Delay disc. indifference point, 0s delay0.40.40.5-0.70.7-0.70.2
Delay disc. indifference point, 16s delay1.11.21.81.0-1.01.01.4
Delay disc. indifference point, 2s delay0.50.51.9-0.30.3-0.3-1.4
Delay disc. indifference point, 24s delay0.40.40.50.6-0.60.60.7
Delay disc. indifference point, 4s delay1.01.11.3-1.11.1-1.1-0.7
Delay disc. indifference point, 8s delay0.10.10.10.3-0.30.30.4
Indifference point function ln k0.30.50.5-0.70.7-0.7-0.7
Indifference point function log k0.30.50.5-0.70.7-0.7-0.7
Patch foraging total patch changes 0 sec0.40.83.1-0.20.2-0.21.8
Patch foraging total patch changes 12 sec0.10.20.4-0.30.3-0.30.6
Patch foraging total patch changes 18 sec0.71.11.2-1.11.1-1.10.8
Patch foraging total patch changes 24 sec0.40.60.9-0.70.7-0.71.0
Patch foraging total patch changes 6 sec1.11.62.6-1.21.2-1.21.6
Patch foraging time to switch 0 sec0.61.31.61.3-1.31.30.3
Patch foraging water rate 0 sec0.71.52.0-1.41.4-1.4-0.2
Patch foraging water rate 12 sec0.10.20.2-0.40.4-0.40.5
Patch foraging water rate 18 sec2.64.15.3-2.32.3-2.30.8
Patch foraging water rate 24 sec0.10.10.50.0-0.00.00.7
Patch foraging water rate 6 sec0.50.71.3-0.70.7-0.7-1.1
Seeking ratio, delayed vs. immediate footshock5.87.17.8-2.82.8-2.8-2.3
Distance traveled before self-admin0.81.12.10.9-0.90.91.4
Distance traveled after self-admin0.81.01.2-1.11.1-1.10.7
Extensor digitorum longus weight0.20.62.10.3-0.30.3-1.4
Bone: elastic displacement0.00.00.10.0-0.00.00.3
Bone: elastic work0.00.00.0-0.20.2-0.2-0.1
Bone: endosteal estimation0.10.31.2-0.10.1-0.1-1.1
Bone: endosteal perimeter0.20.50.6-0.70.7-0.7-0.8
Epididymis fat weight3.511.812.63.6-3.63.63.1
Delta time in closed arm before/after self-admin0.50.50.60.8-0.80.8-0.2
Delta time in open arm before/after self-admin2.12.12.81.7-1.71.70.0
Diff in mean of infusions in LGA sessions1.11.34.60.5-0.50.5-2.2
Delay discount exponential model param0.00.00.10.1-0.10.10.3
Extinction: sum of active levers before priming0.10.10.2-0.40.4-0.40.1
Active lever presses in extinction session 60.20.20.2-0.50.5-0.5-0.5
Bone: final force1.01.53.7-0.90.9-0.9-1.9
Bone: final moment1.01.74.9-0.80.8-0.8-2.2
Food consumed during 24 hour testing period1.01.32.0-1.11.1-1.1-1.4
Glucose1.42.22.71.7-1.71.7-0.7
Heart weight1.62.53.3-1.51.5-1.5-1.8
Delay discount hyperbolic model param0.10.10.40.2-0.20.20.6
Intermittent access intake day 1-15 change0.51.01.31.1-1.11.10.6
Intermittent access intake escalation0.51.11.21.1-1.11.10.8
Intermittent access intake escalation 21.71.92.31.3-1.31.31.5
Intermitt. access day 1 inactive lever presses0.20.91.2-1.11.1-1.1-0.1
Intermitt. access day 15 inactive lever presses0.10.20.2-0.40.4-0.40.5
Intermitt. access escalation Index0.30.51.9-0.10.1-0.1-1.4
Intermittent access day 1 total infusions0.20.40.9-0.40.4-0.40.9
Intermittent access day 15 total infusions1.52.22.21.5-1.51.51.5
Intermittent access terminal intake (last 3 days)1.11.42.71.0-1.01.01.6
Intermittent access total infusions0.40.51.60.3-0.30.31.3
Intermittent access day 1 locomotion0.40.50.5-0.70.7-0.7-0.5
Intermittent access day 15 total locomotion0.40.72.80.2-0.20.2-1.7
Intermittent access total locomotion0.10.10.10.3-0.30.3-0.3
Intermittent access standard deviation0.61.23.80.6-0.60.61.9
Left kidney weight0.10.72.60.0-0.00.0-1.6
Right kidney weight0.10.41.2-0.40.4-0.4-1.1
Cocaine induced anxiety1.31.82.31.5-1.51.50.8
Post-drug Anxiety0.70.70.90.8-0.80.80.9
Baseline Anxiety0.30.40.4-0.70.7-0.7-0.3
Tail length0.20.91.11.1-1.11.10.6
Length with tail0.00.10.10.4-0.40.4-0.2
Length without tail0.41.41.8-1.31.3-1.3-0.4
Times rat made contact with spout1.21.41.8-1.41.4-1.40.1
Lifetime Intake0.40.52.1-0.10.1-0.11.5
Liver weight, left2.64.25.12.3-2.32.31.2
Liver weight, right0.50.92.50.6-0.60.61.6
Locomotor activity0.20.31.00.1-0.10.11.0
Locomotor testing distance0.10.20.4-0.30.3-0.30.6
Locomotor testing rearing1.01.92.5-1.61.6-1.6-0.4
Locomotion in novel chamber0.20.20.3-0.50.5-0.5-0.0
Locomotion in novel chamber post-restriction0.30.40.6-0.70.7-0.70.2
Fecal boli incidents, locomotor time 10.50.82.8-0.30.3-0.31.7
Change in fecal boli incidents, locomotor task0.10.10.1-0.30.3-0.3-0.0
Time >=10cm from walls, locomotor time 11.21.21.51.2-1.21.20.6
Bouts of movement, locomotor time 12.83.24.2-2.02.0-2.00.5
Total resting periods, locomotor time 13.03.34.4-2.12.1-2.10.1
Rest time, locomotor task time 10.20.20.4-0.40.4-0.40.7
Distance moved, locomotor task time 11.82.83.61.9-1.91.90.4
Vertical activity count, locomotor time 10.30.81.11.0-1.01.0-0.4
Time >=10cm from walls, locomotor time 20.50.82.80.3-0.30.3-1.7
Bouts of movement, locomotor time 20.81.31.6-1.31.3-1.30.4
Total resting periods, locomotor time 21.11.92.6-1.61.6-1.60.3
Rest time, locomotor task time 20.20.20.70.2-0.20.20.9
Distance moved, locomotor task time 20.10.20.30.4-0.40.40.5
Vertical activity count, locomotor time 20.00.00.00.2-0.20.20.0
Light reinforcement 10.20.50.7-0.80.8-0.80.2
Light reinforcement 20.71.01.2-1.11.1-1.1-0.7
Bone: marrow area0.10.31.2-0.10.1-0.1-1.1
Bone: maximum diameter1.12.12.4-1.41.4-1.4-1.5
Bone: maximum force1.11.93.7-1.21.2-1.2-1.9
Bone: maximum moment1.01.84.3-1.01.0-1.0-2.1
Mean time between licks in bursts0.20.50.70.8-0.80.80.2
Mean num. licks in bursts0.30.40.5-0.70.7-0.7-0.3
Cd content in liver0.20.20.20.5-0.50.5-0.3
Co content in liver0.40.50.5-0.70.7-0.70.6
Cu content in liver2.02.33.11.8-1.81.80.0
Fe content in liver0.91.11.3-1.01.0-1.0-1.1
K content in liver0.20.20.40.3-0.30.3-0.7
Mg content in liver0.10.10.1-0.40.4-0.40.0
Mn content in liver0.20.31.00.1-0.10.1-1.0
Na content in liver0.80.81.1-1.11.1-1.1-0.1
Rb content in liver1.51.71.8-1.31.3-1.3-1.4
Se content in liver0.00.00.00.0-0.00.00.2
Sr content in liver1.51.32.21.0-1.01.01.5
Zn content in liver0.20.30.30.5-0.50.5-0.5
Bone: minimum diameter0.20.30.60.4-0.40.4-0.8
Time in familiar zone, hab. session 10.30.31.30.2-0.20.21.1
Time in novel zone, hab. session 10.40.40.9-0.50.5-0.5-0.9
Total zone transitions, hab. session 11.31.82.2-1.51.5-1.50.6
Total locomotion distance, hab. session 10.60.92.0-0.70.7-0.71.4
Locomotion velocity, hab. session 10.50.70.7-0.80.8-0.80.7
Time in familiar zone, hab. session 20.20.20.2-0.40.4-0.4-0.4
Time in novel zone, hab. session 20.90.91.21.1-1.11.1-0.1
Total zone transitions, hab. session 21.01.32.1-1.01.0-1.01.5
Total locomotion distance, hab. session 21.01.44.1-0.70.7-0.72.0
Locomotion velocity, hab. session 21.11.44.7-0.60.6-0.62.2
Novel to familiar place preference ratio0.50.51.10.6-0.60.6-1.0
Novelty place preference0.60.61.40.6-0.60.6-1.2
Time in novel zone, NPP test0.40.41.10.5-0.50.5-1.0
Total zone transitions, NPP test0.50.83.0-0.00.0-0.01.7
Total locomotion distance, NPP test0.70.93.30.3-0.30.31.8
Locomotion velocity, NPP test0.50.72.60.2-0.20.21.6
Intraocular pressure0.20.30.40.6-0.60.60.5
Delta distance traveled before/after self-admin3.33.53.8-1.91.9-1.9-1.7
Delta ambulatory time before/after self-admin2.63.33.9-1.71.7-1.7-2.0
Parametrial fat weight0.71.62.01.4-1.41.40.7
Pavlov. Cond. lever latency1.31.62.21.5-1.51.5-0.1
Pavlov. Cond. magazine entry latency0.30.40.6-0.60.6-0.60.8
Pavlov. Cond. change in total contacts3.03.24.0-2.02.0-2.00.9
Pavlov. Cond. index score1.41.82.3-1.51.5-1.50.2
Pavlov. Cond. latency score1.21.52.0-1.41.4-1.40.1
Pavlov. Cond. lever contacts1.31.52.0-1.41.4-1.40.3
Pavlov. Cond. magazine entry number1.01.21.61.3-1.31.3-0.2
Pavlov. Cond. intertrial magazine entries0.91.11.41.2-1.21.2-0.4
Pavlov. Cond. lever-magazine prob. diff.1.41.82.4-1.51.5-1.50.2
Pavlov. Cond. response bias1.82.32.9-1.71.7-1.70.6
Pavlov. Cond. lever latency0.70.91.21.1-1.11.10.3
Pavlov. Cond. magazine entry latency3.74.58.5-1.81.8-1.8-2.9
Pavlov. Cond. change in total contacts2.53.94.9-2.22.2-2.2-1.1
Pavlov. Cond. index score3.24.34.9-2.22.2-2.2-1.7
Pavlov. Cond. latency score3.34.34.9-2.22.2-2.2-1.6
Pavlov. Cond. lever contacts0.71.01.2-1.11.1-1.1-0.5
Pavlov. Cond. magazine entry number2.32.84.31.5-1.51.52.1
Pavlov. Cond. intertrial magazine entries1.92.93.51.9-1.91.91.0
Pavlov. Cond. lever-magazine prob. diff.3.64.85.3-2.32.3-2.3-1.8
Pavlov. Cond. response bias1.41.82.0-1.31.3-1.3-1.4
Time in closed arm before self-admin0.20.20.3-0.50.5-0.5-0.1
Time in closed arm after self-admin0.30.30.70.4-0.40.40.8
Time in open arm before self-admin0.10.10.4-0.20.2-0.20.6
Time in open arm after self-admin0.20.20.40.4-0.40.4-0.6
Bone: periosteal estimation0.51.02.8-0.60.6-0.6-1.7
Bone: periosteal perimeter0.30.61.0-0.60.6-0.6-1.0
Bone: post-yield work0.20.20.9-0.10.1-0.1-0.9
Progressive ratio test 1 active lever presses0.40.51.2-0.50.5-0.51.1
Progressive ratio test 1 breakpoint0.40.51.3-0.50.5-0.51.1
Progressive ratio test 1 inactive lever presses0.81.21.4-1.21.2-1.20.6
Progressive ratio test 2 active lever presses0.10.10.10.3-0.30.30.4
Progressive ratio test 2 breakpoint0.10.10.10.3-0.30.30.4
Progressive ratio test 2 inactive lever presses0.10.20.4-0.40.4-0.40.6
Incentive Sensitization - Responses0.91.21.31.1-1.11.1-1.1
Incentive Sensitization - Breakpoint0.91.21.61.0-1.01.0-1.3
Sum of active levers in priming session hrs 5-60.60.60.70.9-0.90.90.1
Progressive ratio1.82.95.7-1.41.4-1.4-2.4
Food seeking constrained by brief footshock1.41.82.3-1.51.5-1.50.4
Seeking ratio, punishment vs. effort1.01.55.9-0.10.1-0.12.4
Retroperitoneal fat weight6.427.436.56.0-6.06.00.2
Reaction time number correct0.30.51.40.4-0.40.4-1.2
Reaction time mean minus median0.61.51.91.4-1.41.4-0.0
Reaction time mean minus median AUC0.10.20.30.4-0.40.4-0.6
Reaction time num false alarms0.00.00.00.1-0.10.10.1
Reaction time num false alarms AUC0.00.10.10.3-0.30.30.1
Reaction time trials correct on left0.30.51.40.4-0.40.4-1.2
Reaction time trials on left0.30.51.40.5-0.50.5-1.2
Reaction time mean0.60.91.21.1-1.11.10.5
Reaction time mean AUC0.71.11.41.2-1.21.20.6
Median of all reaction times0.60.81.01.0-1.01.00.5
Reaction time omissions1.62.33.01.7-1.71.70.1
Reaction time false alarm rate0.10.10.4-0.00.0-0.00.6
Reaction time premature initiation rate0.81.11.2-1.01.0-1.01.1
Reaction time premature initiations0.20.30.3-0.60.6-0.60.4
Std. dev. reaction times0.71.31.71.3-1.31.3-0.0
Reaction time trials completed0.30.51.40.5-0.50.5-1.2
Reaction time trials AUC0.20.51.40.4-0.40.4-1.2
Run reversals in cocaine runway, females0.10.10.1-0.40.4-0.4-0.2
Run reversals in cocaine runway, males2.22.34.3-1.31.3-1.32.1
Latency to leave start box in cocaine runway0.50.50.70.8-0.80.8-0.2
Latency to leave start box in cocaine runway, F0.00.00.00.1-0.10.10.0
Latency to leave start box in cocaine runway, M1.00.91.11.1-1.11.1-0.4
Std. dev. time between licks in bursts0.81.11.51.2-1.21.20.3
Total sessions with >9 infusions0.50.60.7-0.80.8-0.80.4
Short access day 1 total inactive lever presses0.81.11.4-1.21.2-1.20.5
Short access day 10 total inactive lever presses0.00.00.10.2-0.20.20.2
Short access day 1 total infusions0.50.60.6-0.80.8-0.80.7
Short access day 10 total infusions0.50.72.60.3-0.30.31.6
Short access total infusions0.30.31.3-0.10.1-0.11.1
Short access day 1 locomotion1.21.51.6-1.31.3-1.3-1.0
Short access day 10 total locomotion0.10.10.10.4-0.40.4-0.2
Short access total locomotion0.20.30.5-0.50.5-0.5-0.7
One hour access (0.3 mA shock)1.31.64.00.9-0.90.92.0
Compulsive drug intake0.30.40.5-0.70.7-0.7-0.3
One hour access (shock baseline)0.71.02.10.8-0.80.81.5
Social response proportion0.40.40.50.7-0.70.7-0.4
Social responses0.60.80.91.0-1.01.0-0.5
Social time0.10.10.40.2-0.20.2-0.6
Soleus weight3.510.312.5-3.53.5-3.5-1.9
Bone: stiffness2.13.46.1-1.61.6-1.6-2.5
Tibialis anterior weight0.00.10.10.3-0.30.30.2
Time to tail flick, vehicle, before self-admin0.20.20.9-0.10.1-0.1-1.0
Time to tail flick, vehicle, after self-admin2.33.14.12.0-2.02.00.3
Time to tail flick, test, before self-admin0.10.10.2-0.30.3-0.30.4
Time to tail flick, test, after self-admin0.20.21.0-0.10.1-0.1-1.0
Delta time to tail flick, vehicle, before/after SA2.01.92.51.6-1.61.60.5
Delta time to tail flick, test, before/after SA1.11.12.2-0.90.9-0.9-1.5
Tibia length0.61.72.21.5-1.51.5-0.4
Ambulatory time before self-admin0.91.43.70.8-0.80.81.9
Ambulatory time after self-admin1.21.41.9-1.41.4-1.40.1
Bone: tissue strength0.20.20.30.6-0.60.6-0.2
Total heroin consumption3.33.84.92.2-2.22.2-0.9
Bone: trabecular number0.81.33.1-0.90.9-0.9-1.8
Bone: trabecular spacing0.50.72.10.5-0.50.51.5
Bone: trabecular thickness0.20.30.40.6-0.60.60.0
Bone: trabecular tissue density0.40.62.2-0.10.1-0.1-1.5
Water consumed over 24 hours1.01.31.6-1.31.3-1.3-0.6
Number of responses in last shaping day0.60.70.9-0.90.9-0.9-0.4