Nutf2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Nutf2 0.03 0.03 3.3e-04 0.02 0.02 0.02 0.02 1.7e-03 2.2e-03 1.0e-03 2.9e-03
2 Brain mRNA stability Nutf2 0.11 0.06 1.0e-10 0.13 0.09 0.12 0.12 6.6e-12 2.7e-08 5.5e-11 2.3e-11
3 PL mRNA stability Nutf2 0.02 0.02 1.4e-03 0.01 0.01 0.01 0.01 1.3e-02 1.1e-02 1.3e-02 2.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.20.5-0.3-0.4
Area under the delay curve0.20.20.5-0.70.1-0.0
BMI with tail0.10.20.60.2-0.7-0.2
BMI without tail0.00.10.1-0.3-0.20.2
Body weight0.31.31.61.3-1.2-0.9
Weight adjusted by age0.00.00.0-0.1-0.1-0.1
Bone surface1.22.12.71.6-1.2-1.5
Bone volume1.01.82.21.5-1.0-1.5
Breakpoint value in progressive ratio session1.61.92.1-1.31.41.4
Number of licking bursts0.40.70.80.9-0.9-0.6
Context. condit. distance diff. score0.20.20.4-0.30.60.3
Locomotion velocity, session 10.00.00.10.1-0.3-0.1
Locomotion distance, session 10.20.20.3-0.40.50.5
Locomotion velocity, session 21.31.51.8-1.11.31.3
Locomotion distance, session 20.30.40.7-0.40.60.8
Locomotion velocity, session 30.30.30.4-0.60.30.6
Locomotion distance, session 30.10.10.1-0.20.40.2
Stereotopy head waving bouts, day 30.10.10.20.2-0.5-0.3
Stereotopy head waving duration, day 30.50.60.70.8-0.8-0.7
Locomotion velocity, session 70.10.10.2-0.20.4-0.2
Locomotion distance, session 70.10.10.2-0.30.40.0
Stereotopy head waving bouts, day 70.20.30.40.5-0.6-0.5
Stereotopy head waving duration, day 70.80.91.30.9-1.1-0.8
Locomotion velocity, session 80.00.00.1-0.10.10.3
Locomotion distance, session 80.71.01.1-0.91.11.0
Degree of sensitization distance0.00.00.10.0-0.1-0.3
Degree of sensitization stereotypy0.50.50.60.7-0.8-0.7
Conditioned locomotion1.61.82.41.6-1.1-1.3
Cocaine response after cond. corrected0.91.11.50.8-1.2-1.1
Cocaine response after cond. not corrected0.30.30.70.2-0.8-0.5
Cocaine response before conditioning1.31.62.1-1.21.11.4
Saline control response3.64.75.22.3-2.3-2.0
Bone: connectivity density0.00.00.1-0.10.20.2
Bone: cortical apparent density0.50.71.3-1.10.60.8
Bone: cortical area0.30.50.90.6-0.4-0.9
Bone: cortical porosity0.60.61.2-0.61.10.6
Bone: cortical porosity0.40.50.9-0.51.00.5
Bone: cortical thickness0.10.20.40.4-0.3-0.6
Bone: cortical thickness0.10.10.40.00.6-0.2
Bone: cortical tissue density0.60.81.4-1.20.60.8
Condit. Reinf. active minus inactive responses4.04.45.2-2.32.21.7
Condit. Reinf. active-inactive response ratio3.43.64.4-2.12.01.6
Condit. Reinf. active responses3.13.84.6-2.12.11.6
Condit. Reinf. inactive responses0.20.20.3-0.40.60.4
Incentive salience index mean2.32.93.6-1.81.91.4
Condit. Reinf. lever presses0.20.30.5-0.60.70.4
Condit. Reinf. active minus inactive responses0.71.01.20.8-1.0-1.1
Condit. Reinf. active-inactive response ratio0.80.91.00.8-1.0-1.0
Condit. Reinf. active responses0.30.40.50.5-0.6-0.7
Condit. Reinf. inactive responses0.30.40.5-0.60.70.6
Condit. Reinf. lever presses3.24.44.9-1.92.22.2
Condit. Reinf. lever reinforcers received0.00.00.00.0-0.0-0.1
Conditioned reinforcement - actives0.71.21.7-1.31.01.0
Conditioned reinforcement - inactives0.30.40.50.5-0.7-0.6
Conditioned locomotion0.91.21.21.0-1.1-1.1
Patch foraging indifference point 0 sec2.64.84.92.2-2.2-2.2
Patch foraging indifference point AUC1.31.92.81.7-1.3-1.2
Delay disc. indifference point, 0s delay0.80.91.5-1.20.60.9
Delay disc. indifference point, 16s delay0.00.00.1-0.10.1-0.3
Delay disc. indifference point, 2s delay0.10.10.30.1-0.4-0.6
Delay disc. indifference point, 24s delay0.00.00.1-0.10.40.0
Delay disc. indifference point, 4s delay0.40.41.1-1.10.10.3
Delay disc. indifference point, 8s delay0.20.20.6-0.8-0.1-0.2
Indifference point function ln k0.10.20.4-0.70.30.2
Indifference point function log k0.10.20.4-0.70.30.2
Patch foraging total patch changes 0 sec2.54.85.02.2-2.2-2.1
Patch foraging total patch changes 12 sec2.43.14.32.1-1.6-1.5
Patch foraging total patch changes 18 sec2.23.44.72.2-1.5-1.9
Patch foraging total patch changes 24 sec0.10.20.60.8-0.3-0.2
Patch foraging total patch changes 6 sec1.72.63.01.7-1.7-1.4
Patch foraging time to switch 0 sec0.91.81.9-1.41.31.4
Patch foraging water rate 0 sec1.63.34.72.2-1.7-1.6
Patch foraging water rate 12 sec0.20.50.80.9-0.7-0.5
Patch foraging water rate 18 sec0.10.20.30.5-0.3-0.4
Patch foraging water rate 24 sec0.00.10.10.3-0.1-0.3
Patch foraging water rate 6 sec1.11.62.11.5-1.0-1.3
Seeking ratio, delayed vs. immediate footshock2.43.03.61.7-1.6-1.9
Distance traveled before self-admin0.60.71.80.5-0.5-1.3
Distance traveled after self-admin0.10.10.20.0-0.2-0.4
Extensor digitorum longus weight0.83.35.1-1.32.31.7
Bone: elastic displacement2.32.73.11.5-1.8-1.7
Bone: elastic work0.91.21.51.0-1.1-1.2
Bone: endosteal estimation0.10.10.20.3-0.1-0.5
Bone: endosteal perimeter0.10.20.40.6-0.0-0.7
Epididymis fat weight2.17.38.73.0-2.3-2.8
Delta time in closed arm before/after self-admin0.00.00.00.1-0.2-0.2
Delta time in open arm before/after self-admin0.10.10.20.1-0.5-0.2
Diff in mean of infusions in LGA sessions0.60.80.9-0.81.00.9
Delay discount exponential model param0.20.20.60.8-0.2-0.1
Extinction: sum of active levers before priming0.40.50.9-0.60.51.0
Active lever presses in extinction session 60.00.00.1-0.30.1-0.1
Bone: final force1.21.92.7-1.31.71.1
Bone: final moment0.50.81.2-0.81.10.6
Food consumed during 24 hour testing period0.10.10.20.5-0.0-0.2
Glucose1.32.02.9-1.71.01.4
Heart weight0.00.00.1-0.1-0.30.0
Delay discount hyperbolic model param0.30.30.90.9-0.2-0.2
Intermittent access intake day 1-15 change1.32.73.7-1.91.31.6
Intermittent access intake escalation1.42.93.8-2.01.41.7
Intermittent access intake escalation 21.11.21.8-1.30.81.1
Intermitt. access day 1 inactive lever presses0.00.10.2-0.3-0.10.4
Intermitt. access day 15 inactive lever presses0.00.10.1-0.20.40.1
Intermitt. access escalation Index0.30.40.70.8-0.6-0.5
Intermittent access day 1 total infusions0.00.00.1-0.3-0.10.2
Intermittent access day 15 total infusions1.72.53.9-2.01.11.6
Intermittent access terminal intake (last 3 days)2.93.85.2-2.31.61.9
Intermittent access total infusions2.32.73.6-1.91.41.6
Intermittent access day 1 locomotion1.41.82.51.2-1.6-1.2
Intermittent access day 15 total locomotion0.40.71.40.4-1.2-0.7
Intermittent access total locomotion0.20.30.50.1-0.7-0.5
Intermittent access standard deviation0.20.40.60.5-0.8-0.6
Left kidney weight1.78.19.5-2.53.13.0
Right kidney weight1.88.49.9-2.53.23.0
Cocaine induced anxiety2.94.15.02.0-2.2-1.9
Post-drug Anxiety0.70.81.30.8-1.1-0.7
Baseline Anxiety1.72.02.1-1.41.31.4
Tail length0.00.10.20.10.40.2
Length with tail0.10.51.21.1-0.3-0.5
Length without tail0.51.62.11.5-1.2-1.0
Times rat made contact with spout1.01.11.31.1-1.0-1.1
Lifetime Intake1.82.22.9-1.71.31.4
Liver weight, left0.20.40.60.8-0.5-0.4
Liver weight, right0.30.61.11.0-0.6-0.5
Locomotor activity2.64.14.72.1-1.8-2.2
Locomotor testing distance2.03.54.21.8-1.7-2.1
Locomotor testing rearing0.30.70.80.9-0.6-0.9
Locomotion in novel chamber2.43.03.51.6-1.7-1.9
Locomotion in novel chamber post-restriction1.42.32.71.3-1.6-1.7
Fecal boli incidents, locomotor time 10.71.01.31.1-1.1-0.7
Change in fecal boli incidents, locomotor task0.50.50.8-0.80.40.9
Time >=10cm from walls, locomotor time 10.20.30.60.2-0.8-0.3
Bouts of movement, locomotor time 10.10.20.30.4-0.6-0.0
Total resting periods, locomotor time 10.00.10.10.1-0.30.2
Rest time, locomotor task time 10.10.10.3-0.2-0.20.6
Distance moved, locomotor task time 10.10.20.40.2-0.3-0.6
Vertical activity count, locomotor time 10.40.91.70.9-0.6-1.3
Time >=10cm from walls, locomotor time 20.30.40.7-0.80.30.7
Bouts of movement, locomotor time 20.61.01.2-0.91.11.0
Total resting periods, locomotor time 20.71.31.5-1.01.21.1
Rest time, locomotor task time 20.50.71.2-0.70.51.1
Distance moved, locomotor task time 21.01.21.80.9-1.0-1.3
Vertical activity count, locomotor time 21.11.62.21.2-1.0-1.5
Light reinforcement 12.05.06.12.5-1.7-2.4
Light reinforcement 22.03.14.21.6-1.6-2.0
Bone: marrow area0.00.10.20.3-0.1-0.4
Bone: maximum diameter0.30.71.00.7-0.6-1.0
Bone: maximum force0.30.50.8-0.60.90.5
Bone: maximum moment0.00.00.1-0.20.30.0
Mean time between licks in bursts0.00.00.10.1-0.1-0.4
Mean num. licks in bursts0.00.00.1-0.00.3-0.2
Cd content in liver0.00.00.0-0.20.20.1
Co content in liver0.00.00.0-0.20.1-0.1
Cu content in liver1.01.11.3-0.91.11.1
Fe content in liver2.22.63.01.6-1.7-1.6
K content in liver0.20.20.3-0.5-0.10.4
Mg content in liver0.40.50.80.6-0.9-0.5
Mn content in liver0.91.01.40.9-1.2-0.9
Na content in liver0.30.31.0-0.2-1.0-0.0
Rb content in liver0.40.40.8-0.30.90.6
Se content in liver0.10.10.2-0.10.5-0.2
Sr content in liver1.00.81.31.1-0.7-0.9
Zn content in liver1.71.92.5-1.61.31.2
Bone: minimum diameter0.20.30.60.5-0.3-0.8
Time in familiar zone, hab. session 10.60.60.70.8-0.8-0.7
Time in novel zone, hab. session 10.40.40.6-0.80.60.5
Total zone transitions, hab. session 10.70.91.41.2-0.9-0.8
Total locomotion distance, hab. session 10.81.11.51.2-0.9-1.0
Locomotion velocity, hab. session 10.91.31.81.3-1.0-1.0
Time in familiar zone, hab. session 21.31.41.90.8-1.2-1.4
Time in novel zone, hab. session 24.64.65.1-2.12.12.3
Total zone transitions, hab. session 21.41.82.71.6-1.2-1.2
Total locomotion distance, hab. session 20.81.01.51.2-0.8-1.0
Locomotion velocity, hab. session 20.60.91.41.2-0.7-0.8
Novel to familiar place preference ratio1.71.82.2-1.51.11.4
Novelty place preference2.73.03.6-1.91.51.8
Time in novel zone, NPP test2.52.73.4-1.91.41.6
Total zone transitions, NPP test1.42.12.91.7-1.3-1.3
Total locomotion distance, NPP test0.60.81.31.2-0.6-0.8
Locomotion velocity, NPP test0.50.71.21.1-0.5-0.7
Intraocular pressure0.50.81.6-0.51.30.7
Delta distance traveled before/after self-admin0.30.30.8-0.20.40.9
Delta ambulatory time before/after self-admin0.70.91.5-0.90.61.2
Parametrial fat weight7.417.519.44.4-4.2-4.0
Pavlov. Cond. lever latency0.20.20.30.3-0.6-0.4
Pavlov. Cond. magazine entry latency1.11.42.4-1.01.50.9
Pavlov. Cond. change in total contacts1.11.21.5-1.01.21.1
Pavlov. Cond. index score0.91.21.9-0.81.41.0
Pavlov. Cond. latency score0.70.91.5-0.71.20.8
Pavlov. Cond. lever contacts0.81.01.3-0.81.11.0
Pavlov. Cond. magazine entry number1.11.42.11.0-1.4-1.0
Pavlov. Cond. intertrial magazine entries0.30.40.80.4-0.5-0.9
Pavlov. Cond. lever-magazine prob. diff.1.01.21.9-0.91.41.0
Pavlov. Cond. response bias0.60.81.3-0.71.10.8
Pavlov. Cond. lever latency1.72.32.61.5-1.6-1.5
Pavlov. Cond. magazine entry latency4.15.05.7-2.32.41.9
Pavlov. Cond. change in total contacts2.13.44.8-1.72.21.6
Pavlov. Cond. index score4.15.66.4-2.42.52.2
Pavlov. Cond. latency score4.25.66.3-2.42.52.2
Pavlov. Cond. lever contacts2.23.03.6-1.61.91.7
Pavlov. Cond. magazine entry number6.17.68.62.9-2.9-2.4
Pavlov. Cond. intertrial magazine entries4.36.56.82.6-2.4-2.6
Pavlov. Cond. lever-magazine prob. diff.4.66.16.9-2.52.62.2
Pavlov. Cond. response bias3.85.16.0-2.32.42.0
Time in closed arm before self-admin3.34.35.92.4-2.1-1.5
Time in closed arm after self-admin2.62.83.21.6-1.8-1.5
Time in open arm before self-admin2.62.93.8-1.81.91.3
Time in open arm after self-admin0.40.40.6-0.80.70.4
Bone: periosteal estimation0.20.50.90.7-0.3-1.0
Bone: periosteal perimeter0.61.01.51.1-0.6-1.2
Bone: post-yield work0.60.91.00.9-1.0-1.0
Progressive ratio test 1 active lever presses3.54.34.9-2.12.21.9
Progressive ratio test 1 breakpoint3.13.84.4-2.02.11.8
Progressive ratio test 1 inactive lever presses0.10.10.3-0.50.00.4
Progressive ratio test 2 active lever presses2.52.94.0-2.01.41.7
Progressive ratio test 2 breakpoint2.73.04.0-2.01.41.8
Progressive ratio test 2 inactive lever presses0.00.10.2-0.50.00.2
Incentive Sensitization - Responses0.81.11.7-1.30.61.2
Incentive Sensitization - Breakpoint1.01.41.9-1.40.71.3
Sum of active levers in priming session hrs 5-60.20.20.3-0.50.60.3
Progressive ratio0.20.30.8-0.10.9-0.1
Food seeking constrained by brief footshock1.72.12.5-1.41.41.6
Seeking ratio, punishment vs. effort0.40.61.2-0.70.21.1
Retroperitoneal fat weight7.029.931.25.5-5.3-5.6
Reaction time number correct1.12.22.5-1.61.41.4
Reaction time mean minus median0.71.82.8-1.21.71.0
Reaction time mean minus median AUC0.61.52.9-1.01.70.9
Reaction time num false alarms0.10.10.2-0.20.10.5
Reaction time num false alarms AUC0.00.00.00.1-0.20.1
Reaction time trials correct on left1.12.22.5-1.61.41.4
Reaction time trials on left1.22.32.6-1.61.51.5
Reaction time mean0.00.00.10.00.4-0.1
Reaction time mean AUC0.10.10.3-0.20.60.2
Median of all reaction times0.10.10.20.5-0.1-0.4
Reaction time omissions0.10.10.3-0.10.5-0.1
Reaction time false alarm rate0.50.70.80.9-0.9-0.6
Reaction time premature initiation rate1.21.62.0-1.11.41.3
Reaction time premature initiations2.34.24.6-1.92.12.0
Std. dev. reaction times0.20.30.6-0.60.80.3
Reaction time trials completed1.22.32.6-1.61.51.5
Reaction time trials AUC1.22.32.6-1.61.51.5
Run reversals in cocaine runway, females2.42.43.11.5-1.8-1.3
Run reversals in cocaine runway, males0.40.50.60.8-0.7-0.5
Latency to leave start box in cocaine runway0.10.10.20.4-0.10.4
Latency to leave start box in cocaine runway, F0.60.71.2-0.90.31.1
Latency to leave start box in cocaine runway, M2.12.04.32.1-0.7-1.0
Std. dev. time between licks in bursts1.72.32.71.6-1.3-1.7
Total sessions with >9 infusions1.51.92.5-1.61.41.1
Short access day 1 total inactive lever presses0.00.10.10.0-0.2-0.4
Short access day 10 total inactive lever presses0.10.20.30.5-0.6-0.4
Short access day 1 total infusions0.30.40.6-0.80.50.6
Short access day 10 total infusions0.30.40.4-0.60.60.6
Short access total infusions1.82.32.6-1.61.51.4
Short access day 1 locomotion0.30.30.6-0.80.40.5
Short access day 10 total locomotion1.93.54.21.8-1.8-2.0
Short access total locomotion0.50.60.80.7-0.7-0.9
One hour access (0.3 mA shock)1.41.62.0-1.41.11.3
Compulsive drug intake0.10.10.20.4-0.3-0.4
One hour access (shock baseline)1.01.62.1-1.50.91.3
Social response proportion0.60.71.0-1.00.70.8
Social responses0.00.10.1-0.40.2-0.0
Social time0.00.00.1-0.20.1-0.1
Soleus weight0.20.60.70.8-0.6-0.9
Bone: stiffness3.86.17.7-2.42.82.3
Tibialis anterior weight0.41.52.7-0.71.61.1
Time to tail flick, vehicle, before self-admin0.60.71.0-1.00.60.8
Time to tail flick, vehicle, after self-admin0.70.91.20.7-1.0-1.1
Time to tail flick, test, before self-admin2.52.63.51.9-1.5-1.5
Time to tail flick, test, after self-admin0.10.10.20.40.1-0.3
Delta time to tail flick, vehicle, before/after SA1.01.01.41.0-0.7-1.2
Delta time to tail flick, test, before/after SA1.31.31.7-1.21.30.9
Tibia length0.00.10.2-0.00.40.3
Ambulatory time before self-admin0.91.42.60.9-0.9-1.6
Ambulatory time after self-admin0.20.20.4-0.0-0.6-0.7
Bone: tissue strength0.10.10.1-0.4-0.30.2
Total heroin consumption0.81.01.2-1.00.81.1
Bone: trabecular number0.30.60.70.8-0.7-0.7
Bone: trabecular spacing0.10.10.10.4-0.2-0.2
Bone: trabecular thickness0.50.60.8-0.80.90.7
Bone: trabecular tissue density0.71.01.2-1.00.91.1
Water consumed over 24 hours0.10.20.30.6-0.3-0.3
Number of responses in last shaping day0.50.60.8-0.70.90.7