Nop14

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL intron excision ratio chr14_80322010_80324091 0.03 0.03 5.0e-03 0.02 0.01 0.02 0.02 1.8e-03 9.4e-03 2.0e-03 3.6e-03
2 PL intron excision ratio chr14_80322010_80324116 0.03 0.03 6.3e-03 0.02 0.01 0.02 0.02 2.3e-03 1.1e-02 3.8e-03 4.7e-03
3 Liver gene expression Nop14 0.06 0.05 7.5e-05 0.04 0.04 0.04 0.04 2.6e-05 4.9e-05 1.9e-05 5.9e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.31.91.4-1.40.1
Area under the delay curve0.40.40.6-0.60.6-0.8
BMI with tail2.17.210.7-3.33.30.3
BMI without tail1.75.17.3-2.72.70.8
Body weight5.021.730.2-5.55.5-2.2
Weight adjusted by age2.43.64.8-2.22.2-1.1
Bone surface0.40.72.1-0.10.1-1.4
Bone volume0.10.10.20.3-0.3-0.5
Breakpoint value in progressive ratio session0.10.10.10.3-0.30.2
Number of licking bursts0.91.41.5-1.21.2-1.1
Context. condit. distance diff. score0.30.30.40.5-0.50.6
Locomotion velocity, session 11.01.11.41.2-1.20.8
Locomotion distance, session 10.30.40.60.8-0.80.2
Locomotion velocity, session 24.75.57.92.8-2.80.8
Locomotion distance, session 22.43.45.02.2-2.20.3
Locomotion velocity, session 30.30.40.50.6-0.6-0.7
Locomotion distance, session 30.00.00.0-0.00.0-0.1
Stereotopy head waving bouts, day 32.02.46.70.5-0.52.6
Stereotopy head waving duration, day 31.61.95.40.4-0.42.3
Locomotion velocity, session 71.21.33.2-0.60.6-1.8
Locomotion distance, session 70.50.61.20.6-0.6-1.1
Stereotopy head waving bouts, day 71.61.82.2-1.51.51.0
Stereotopy head waving duration, day 72.02.43.6-1.91.90.3
Locomotion velocity, session 81.41.72.51.6-1.60.1
Locomotion distance, session 81.82.63.41.8-1.80.9
Degree of sensitization distance1.01.01.51.2-1.2-0.4
Degree of sensitization stereotypy1.71.92.8-1.71.70.1
Conditioned locomotion0.70.82.3-0.10.1-1.5
Cocaine response after cond. corrected1.21.41.41.2-1.21.2
Cocaine response after cond. not corrected0.50.60.70.7-0.70.8
Cocaine response before conditioning0.70.80.8-0.90.9-0.9
Saline control response0.20.20.30.5-0.50.3
Bone: connectivity density0.60.91.31.1-1.1-0.3
Bone: cortical apparent density0.81.11.6-0.90.91.3
Bone: cortical area4.26.58.3-2.92.9-1.7
Bone: cortical porosity0.30.30.50.7-0.70.2
Bone: cortical porosity0.10.10.20.1-0.10.5
Bone: cortical thickness2.84.76.7-2.62.6-0.8
Bone: cortical thickness0.20.20.5-0.30.3-0.7
Bone: cortical tissue density0.91.22.1-0.90.91.4
Condit. Reinf. active minus inactive responses1.01.11.21.0-1.01.1
Condit. Reinf. active-inactive response ratio2.32.52.81.7-1.71.4
Condit. Reinf. active responses0.40.50.60.6-0.60.8
Condit. Reinf. inactive responses1.01.21.4-1.21.2-0.9
Incentive salience index mean0.00.00.10.2-0.20.3
Condit. Reinf. lever presses0.71.01.0-1.01.0-1.0
Condit. Reinf. active minus inactive responses0.20.30.4-0.50.5-0.6
Condit. Reinf. active-inactive response ratio0.00.00.00.2-0.2-0.0
Condit. Reinf. active responses0.10.20.20.3-0.3-0.5
Condit. Reinf. inactive responses0.10.10.20.5-0.5-0.0
Condit. Reinf. lever presses0.20.30.5-0.70.7-0.2
Condit. Reinf. lever reinforcers received0.10.20.50.1-0.1-0.7
Conditioned reinforcement - actives0.30.60.7-0.80.8-0.6
Conditioned reinforcement - inactives0.50.70.9-1.01.0-0.5
Conditioned locomotion0.91.11.4-1.21.2-0.7
Patch foraging indifference point 0 sec0.10.10.30.0-0.00.6
Patch foraging indifference point AUC0.30.40.50.6-0.60.7
Delay disc. indifference point, 0s delay0.80.91.7-0.70.7-1.3
Delay disc. indifference point, 16s delay0.00.00.00.2-0.20.2
Delay disc. indifference point, 2s delay0.10.20.40.1-0.1-0.7
Delay disc. indifference point, 24s delay0.20.20.2-0.40.4-0.4
Delay disc. indifference point, 4s delay0.20.20.20.4-0.4-0.5
Delay disc. indifference point, 8s delay0.60.70.9-0.90.9-0.7
Indifference point function ln k0.10.20.30.5-0.50.2
Indifference point function log k0.10.20.30.5-0.50.2
Patch foraging total patch changes 0 sec0.10.10.4-0.00.00.7
Patch foraging total patch changes 12 sec0.20.30.4-0.60.6-0.2
Patch foraging total patch changes 18 sec0.10.10.30.1-0.10.6
Patch foraging total patch changes 24 sec0.10.20.6-0.20.20.8
Patch foraging total patch changes 6 sec0.20.20.7-0.20.20.8
Patch foraging time to switch 0 sec0.81.62.0-1.41.4-0.9
Patch foraging water rate 0 sec0.10.10.2-0.40.4-0.2
Patch foraging water rate 12 sec0.30.61.90.1-0.11.4
Patch foraging water rate 18 sec0.50.82.1-0.40.41.4
Patch foraging water rate 24 sec0.60.81.1-0.80.81.1
Patch foraging water rate 6 sec0.71.01.4-1.21.20.6
Seeking ratio, delayed vs. immediate footshock1.82.22.91.7-1.71.0
Distance traveled before self-admin0.91.21.81.3-1.30.2
Distance traveled after self-admin0.10.10.20.2-0.2-0.5
Extensor digitorum longus weight2.18.112.1-3.53.5-0.1
Bone: elastic displacement0.70.80.9-0.90.9-0.9
Bone: elastic work2.63.54.8-2.22.2-0.9
Bone: endosteal estimation0.81.73.1-1.01.0-1.7
Bone: endosteal perimeter0.91.93.3-1.11.1-1.8
Epididymis fat weight1.75.97.6-2.72.7-1.6
Delta time in closed arm before/after self-admin0.60.50.80.9-0.90.2
Delta time in open arm before/after self-admin1.31.31.7-1.31.3-0.6
Diff in mean of infusions in LGA sessions0.70.81.21.1-1.10.4
Delay discount exponential model param0.20.30.50.4-0.40.7
Extinction: sum of active levers before priming0.70.80.9-1.01.0-0.7
Active lever presses in extinction session 60.00.00.0-0.10.1-0.1
Bone: final force3.65.76.7-2.62.6-1.9
Bone: final moment2.74.45.7-2.42.4-1.3
Food consumed during 24 hour testing period0.00.10.10.2-0.20.3
Glucose0.20.30.70.3-0.3-0.8
Heart weight0.91.41.7-1.31.3-0.9
Delay discount hyperbolic model param0.20.30.60.3-0.30.7
Intermittent access intake day 1-15 change1.93.95.32.3-2.31.0
Intermittent access intake escalation1.32.63.61.9-1.90.8
Intermittent access intake escalation 22.12.43.21.8-1.80.9
Intermitt. access day 1 inactive lever presses0.10.50.60.8-0.80.5
Intermitt. access day 15 inactive lever presses0.30.60.80.9-0.90.5
Intermitt. access escalation Index0.50.71.01.0-1.00.5
Intermittent access day 1 total infusions0.61.01.2-1.11.1-0.8
Intermittent access day 15 total infusions0.00.00.00.0-0.0-0.1
Intermittent access terminal intake (last 3 days)0.00.00.10.3-0.30.1
Intermittent access total infusions0.10.10.2-0.40.4-0.3
Intermittent access day 1 locomotion0.50.70.8-0.90.9-0.6
Intermittent access day 15 total locomotion0.20.30.3-0.60.6-0.5
Intermittent access total locomotion0.00.00.0-0.10.1-0.2
Intermittent access standard deviation0.30.50.70.8-0.80.4
Left kidney weight3.516.424.2-4.94.9-0.8
Right kidney weight2.812.718.7-4.34.3-0.9
Cocaine induced anxiety0.40.60.70.8-0.80.6
Post-drug Anxiety0.10.10.20.4-0.40.0
Baseline Anxiety1.61.82.0-1.41.4-1.2
Tail length0.62.33.2-1.81.8-0.7
Length with tail2.711.915.4-3.93.9-2.2
Length without tail2.58.09.8-3.13.1-2.1
Times rat made contact with spout0.91.11.41.2-1.20.7
Lifetime Intake0.10.10.2-0.40.4-0.2
Liver weight, left0.40.70.9-0.90.9-0.7
Liver weight, right2.64.56.8-2.62.6-0.2
Locomotor activity0.10.10.30.1-0.1-0.6
Locomotor testing distance0.40.70.9-0.90.9-0.5
Locomotor testing rearing0.71.52.1-1.51.5-0.5
Locomotion in novel chamber0.40.60.70.8-0.80.6
Locomotion in novel chamber post-restriction0.10.10.10.3-0.3-0.2
Fecal boli incidents, locomotor time 10.30.50.60.8-0.80.6
Change in fecal boli incidents, locomotor task0.50.50.60.8-0.80.4
Time >=10cm from walls, locomotor time 11.61.62.0-1.41.4-1.0
Bouts of movement, locomotor time 10.10.10.2-0.40.40.2
Total resting periods, locomotor time 10.10.10.2-0.40.40.1
Rest time, locomotor task time 11.01.21.7-1.31.3-0.5
Distance moved, locomotor task time 10.20.30.50.4-0.40.7
Vertical activity count, locomotor time 10.41.11.51.2-1.20.4
Time >=10cm from walls, locomotor time 20.60.91.1-0.90.9-1.0
Bouts of movement, locomotor time 20.00.00.00.1-0.10.2
Total resting periods, locomotor time 20.00.00.0-0.20.2-0.0
Rest time, locomotor task time 20.70.91.2-1.11.1-0.6
Distance moved, locomotor task time 20.40.50.60.8-0.80.5
Vertical activity count, locomotor time 20.91.31.91.4-1.40.1
Light reinforcement 11.64.06.0-2.52.5-0.2
Light reinforcement 22.33.65.3-2.32.3-0.2
Bone: marrow area0.81.73.2-0.90.9-1.8
Bone: maximum diameter2.85.37.7-2.82.8-0.5
Bone: maximum force2.54.55.4-2.32.3-1.6
Bone: maximum moment1.93.34.4-2.12.1-1.0
Mean time between licks in bursts0.71.62.11.4-1.40.8
Mean num. licks in bursts2.23.54.12.0-2.01.5
Cd content in liver0.20.20.30.4-0.4-0.5
Co content in liver0.60.61.8-0.20.2-1.3
Cu content in liver1.01.11.71.3-1.30.1
Fe content in liver3.13.75.22.3-2.30.9
K content in liver0.30.30.80.1-0.1-0.9
Mg content in liver1.01.01.2-1.11.1-0.8
Mn content in liver0.40.50.70.8-0.8-0.4
Na content in liver0.50.60.80.7-0.7-0.9
Rb content in liver0.20.30.6-0.30.3-0.8
Se content in liver0.60.72.1-0.00.01.4
Sr content in liver1.61.42.0-1.41.4-0.0
Zn content in liver0.91.02.4-0.50.51.5
Bone: minimum diameter1.01.82.7-1.11.1-1.7
Time in familiar zone, hab. session 10.90.91.30.8-0.81.2
Time in novel zone, hab. session 10.40.40.6-0.80.8-0.1
Total zone transitions, hab. session 10.10.20.20.5-0.5-0.2
Total locomotion distance, hab. session 10.60.81.11.1-1.1-0.3
Locomotion velocity, hab. session 10.60.91.30.8-0.8-1.1
Time in familiar zone, hab. session 22.82.93.51.9-1.91.3
Time in novel zone, hab. session 24.84.97.2-2.72.7-0.6
Total zone transitions, hab. session 20.20.20.5-0.20.20.7
Total locomotion distance, hab. session 20.20.30.8-0.10.10.9
Locomotion velocity, hab. session 20.10.20.5-0.00.00.7
Novel to familiar place preference ratio0.20.20.20.4-0.4-0.5
Novelty place preference0.10.10.20.2-0.2-0.4
Time in novel zone, NPP test0.00.00.10.1-0.1-0.3
Total zone transitions, NPP test0.00.00.10.2-0.2-0.2
Total locomotion distance, NPP test0.20.30.50.7-0.70.2
Locomotion velocity, NPP test0.40.60.91.0-1.00.1
Intraocular pressure0.40.50.7-0.80.80.5
Delta distance traveled before/after self-admin0.70.70.8-0.90.9-0.7
Delta ambulatory time before/after self-admin0.00.00.00.1-0.1-0.1
Parametrial fat weight0.10.30.30.5-0.50.6
Pavlov. Cond. lever latency0.91.21.51.0-1.01.2
Pavlov. Cond. magazine entry latency0.50.70.80.8-0.80.9
Pavlov. Cond. change in total contacts0.10.10.40.1-0.1-0.6
Pavlov. Cond. index score0.10.10.20.2-0.2-0.4
Pavlov. Cond. latency score0.10.10.30.0-0.0-0.6
Pavlov. Cond. lever contacts0.70.81.4-0.70.7-1.2
Pavlov. Cond. magazine entry number0.81.01.3-1.11.1-0.6
Pavlov. Cond. intertrial magazine entries0.50.60.6-0.80.80.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.1-0.1-0.4
Pavlov. Cond. response bias0.10.10.20.4-0.40.0
Pavlov. Cond. lever latency0.40.50.8-0.90.9-0.1
Pavlov. Cond. magazine entry latency1.01.21.8-1.31.3-0.5
Pavlov. Cond. change in total contacts0.00.00.0-0.10.10.1
Pavlov. Cond. index score0.00.00.0-0.10.10.1
Pavlov. Cond. latency score0.00.00.0-0.10.10.0
Pavlov. Cond. lever contacts0.71.01.41.2-1.20.2
Pavlov. Cond. magazine entry number1.41.72.51.6-1.60.5
Pavlov. Cond. intertrial magazine entries0.71.01.51.2-1.2-0.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.20.20.1
Pavlov. Cond. response bias0.00.00.10.2-0.2-0.1
Time in closed arm before self-admin0.10.10.1-0.30.30.2
Time in closed arm after self-admin0.30.40.50.7-0.70.4
Time in open arm before self-admin0.10.20.2-0.40.4-0.4
Time in open arm after self-admin1.41.52.0-1.41.4-0.8
Bone: periosteal estimation2.65.45.5-2.42.4-2.3
Bone: periosteal perimeter3.15.45.5-2.32.3-2.4
Bone: post-yield work0.50.71.10.7-0.71.1
Progressive ratio test 1 active lever presses0.70.91.1-1.11.1-0.6
Progressive ratio test 1 breakpoint0.70.91.1-1.01.0-0.7
Progressive ratio test 1 inactive lever presses0.10.20.3-0.50.5-0.2
Progressive ratio test 2 active lever presses0.00.00.0-0.20.2-0.2
Progressive ratio test 2 breakpoint0.00.10.1-0.20.2-0.2
Progressive ratio test 2 inactive lever presses0.30.50.6-0.80.8-0.5
Incentive Sensitization - Responses0.00.00.10.2-0.20.1
Incentive Sensitization - Breakpoint0.00.00.00.2-0.20.0
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.1-0.1
Progressive ratio0.10.10.1-0.20.2-0.4
Food seeking constrained by brief footshock1.41.72.2-1.21.2-1.5
Seeking ratio, punishment vs. effort0.00.10.2-0.10.1-0.4
Retroperitoneal fat weight0.41.72.1-1.41.4-1.0
Reaction time number correct0.51.01.1-1.01.01.0
Reaction time mean minus median0.51.21.71.3-1.30.5
Reaction time mean minus median AUC0.00.10.1-0.30.30.1
Reaction time num false alarms0.91.31.6-1.21.2-0.9
Reaction time num false alarms AUC1.32.12.8-1.71.7-0.7
Reaction time trials correct on left0.51.01.1-1.01.01.0
Reaction time trials on left0.51.01.1-1.01.01.0
Reaction time mean0.81.32.01.4-1.40.1
Reaction time mean AUC0.71.21.81.3-1.30.2
Median of all reaction times0.81.11.71.3-1.3-0.1
Reaction time omissions0.50.71.40.6-0.61.2
Reaction time false alarm rate0.81.11.1-1.11.1-1.0
Reaction time premature initiation rate0.10.10.2-0.40.40.4
Reaction time premature initiations0.50.81.0-0.90.91.0
Std. dev. reaction times0.40.70.90.9-0.90.6
Reaction time trials completed0.51.01.1-1.01.01.0
Reaction time trials AUC0.50.91.0-0.90.91.0
Run reversals in cocaine runway, females0.90.91.41.2-1.2-0.1
Run reversals in cocaine runway, males0.20.20.3-0.50.5-0.3
Latency to leave start box in cocaine runway0.80.91.3-1.11.1-0.5
Latency to leave start box in cocaine runway, F2.32.63.3-1.81.8-1.1
Latency to leave start box in cocaine runway, M0.10.10.20.2-0.20.5
Std. dev. time between licks in bursts0.40.50.50.7-0.7-0.7
Total sessions with >9 infusions0.10.10.1-0.40.4-0.3
Short access day 1 total inactive lever presses0.00.00.0-0.20.20.0
Short access day 10 total inactive lever presses0.41.11.21.1-1.10.9
Short access day 1 total infusions0.00.10.1-0.20.2-0.3
Short access day 10 total infusions0.00.00.0-0.10.10.0
Short access total infusions0.00.00.0-0.00.0-0.0
Short access day 1 locomotion0.30.40.5-0.70.7-0.4
Short access day 10 total locomotion1.12.02.61.6-1.60.9
Short access total locomotion0.40.50.60.8-0.80.5
One hour access (0.3 mA shock)0.00.00.0-0.20.20.0
Compulsive drug intake0.10.10.20.4-0.40.1
One hour access (shock baseline)0.00.00.0-0.20.2-0.0
Social response proportion1.11.31.51.1-1.11.2
Social responses0.30.41.0-0.20.21.0
Social time0.71.01.41.2-1.20.4
Soleus weight2.16.39.1-3.03.00.8
Bone: stiffness1.32.14.8-0.90.9-2.2
Tibialis anterior weight1.13.95.8-2.42.4-0.2
Time to tail flick, vehicle, before self-admin0.40.40.50.7-0.70.3
Time to tail flick, vehicle, after self-admin0.30.40.50.6-0.60.7
Time to tail flick, test, before self-admin0.00.10.1-0.30.30.1
Time to tail flick, test, after self-admin0.20.20.3-0.60.6-0.1
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.40.40.1
Delta time to tail flick, test, before/after SA0.00.00.1-0.10.10.3
Tibia length1.02.94.2-1.51.5-2.1
Ambulatory time before self-admin0.50.81.21.1-1.10.0
Ambulatory time after self-admin0.70.81.21.1-1.1-0.1
Bone: tissue strength0.90.91.4-1.21.20.2
Total heroin consumption0.20.30.4-0.60.6-0.2
Bone: trabecular number0.30.50.70.7-0.70.8
Bone: trabecular spacing1.11.41.5-1.21.2-1.1
Bone: trabecular thickness0.70.91.31.1-1.10.3
Bone: trabecular tissue density0.30.50.50.7-0.7-0.6
Water consumed over 24 hours1.01.31.81.3-1.30.7
Number of responses in last shaping day0.10.10.20.0-0.0-0.4