Nol11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Nol11 0.1 0.05 1.9e-05 0.05 0.07 0.06 0.05 3.0e-05 6.8e-07 2.4e-06 8.0e-06
2 PL gene expression Nol11 0.03 0.02 4.3e-03 0.02 0.02 0.02 0.02 1.0e-03 6.5e-03 1.7e-03 2.2e-03
3 Brain mRNA stability Nol11 0.09 0.05 5.8e-05 0.01 0.04 0.04 0.02 6.0e-02 1.5e-04 1.2e-04 5.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.3-0.30.5-0.5
Area under the delay curve0.60.61.1-1.1-0.4-0.8
BMI with tail1.96.713.8-2.5-0.2-3.7
BMI without tail2.98.914.8-3.40.7-3.8
Body weight1.67.09.2-2.91.8-3.0
Weight adjusted by age0.20.20.5-0.4-0.70.1
Bone surface1.32.45.9-0.22.41.1
Bone volume0.81.33.5-0.71.90.3
Breakpoint value in progressive ratio session0.10.20.40.2-0.20.6
Number of licking bursts0.00.10.20.00.10.4
Context. condit. distance diff. score0.10.10.2-0.4-0.20.1
Locomotion velocity, session 10.20.20.3-0.60.3-0.4
Locomotion distance, session 11.11.42.4-1.6-0.6-1.1
Locomotion velocity, session 20.81.02.50.00.71.6
Locomotion distance, session 20.40.51.0-1.0-0.70.0
Locomotion velocity, session 31.71.92.5-1.5-1.6-1.0
Locomotion distance, session 30.20.20.4-0.6-0.30.5
Stereotopy head waving bouts, day 30.80.91.6-0.3-1.0-1.2
Stereotopy head waving duration, day 30.91.11.4-0.7-1.1-1.2
Locomotion velocity, session 70.10.10.30.5-0.4-0.2
Locomotion distance, session 70.10.10.2-0.2-0.20.5
Stereotopy head waving bouts, day 70.60.61.7-0.4-1.3-0.3
Stereotopy head waving duration, day 70.70.82.20.2-1.50.2
Locomotion velocity, session 80.81.01.30.81.11.1
Locomotion distance, session 80.10.20.4-0.6-0.10.3
Degree of sensitization distance0.10.20.30.40.60.1
Degree of sensitization stereotypy0.80.92.4-0.6-1.60.0
Conditioned locomotion0.10.10.30.10.50.2
Cocaine response after cond. corrected0.30.40.60.7-0.30.8
Cocaine response after cond. not corrected0.91.02.00.9-0.31.4
Cocaine response before conditioning0.10.20.2-0.4-0.40.4
Saline control response0.20.30.3-0.50.6-0.5
Bone: connectivity density0.30.41.1-0.11.10.2
Bone: cortical apparent density4.56.19.2-1.3-2.7-3.0
Bone: cortical area2.53.96.8-2.6-0.5-2.1
Bone: cortical porosity1.71.83.1-0.01.61.8
Bone: cortical porosity0.70.81.1-1.00.90.7
Bone: cortical thickness11.919.824.7-3.5-4.8-5.0
Bone: cortical thickness5.16.08.1-1.9-2.8-2.5
Bone: cortical tissue density4.15.68.6-1.2-2.6-2.9
Condit. Reinf. active minus inactive responses1.01.12.2-1.50.80.7
Condit. Reinf. active-inactive response ratio0.50.61.0-0.50.71.0
Condit. Reinf. active responses1.11.32.4-1.51.10.6
Condit. Reinf. inactive responses0.40.51.0-1.00.7-0.1
Incentive salience index mean0.70.81.0-1.00.90.8
Condit. Reinf. lever presses0.10.10.3-0.20.20.5
Condit. Reinf. active minus inactive responses1.62.14.5-2.11.10.7
Condit. Reinf. active-inactive response ratio1.01.22.1-0.51.11.4
Condit. Reinf. active responses1.82.54.7-2.21.60.3
Condit. Reinf. inactive responses1.72.24.8-2.20.7-1.1
Condit. Reinf. lever presses0.91.23.3-1.80.60.1
Condit. Reinf. lever reinforcers received1.52.13.7-1.91.60.3
Conditioned reinforcement - actives0.30.61.1-1.00.0-0.8
Conditioned reinforcement - inactives0.20.20.4-0.50.6-0.4
Conditioned locomotion0.70.81.6-0.81.3-0.5
Patch foraging indifference point 0 sec1.73.16.5-2.61.0-1.3
Patch foraging indifference point AUC0.50.71.8-0.51.3-0.1
Delay disc. indifference point, 0s delay0.10.10.20.3-0.5-0.1
Delay disc. indifference point, 16s delay1.11.21.9-1.3-0.3-1.4
Delay disc. indifference point, 2s delay0.20.20.3-0.60.5-0.0
Delay disc. indifference point, 24s delay1.82.13.1-1.70.3-1.8
Delay disc. indifference point, 4s delay0.20.20.7-0.2-0.80.1
Delay disc. indifference point, 8s delay0.50.60.8-0.7-0.7-0.9
Indifference point function ln k1.32.33.6-1.4-1.9-1.2
Indifference point function log k1.32.33.6-1.4-1.9-1.2
Patch foraging total patch changes 0 sec1.52.75.7-2.41.1-1.2
Patch foraging total patch changes 12 sec1.92.46.4-0.82.50.4
Patch foraging total patch changes 18 sec0.71.01.6-1.31.2-0.3
Patch foraging total patch changes 24 sec1.52.65.0-2.21.2-1.2
Patch foraging total patch changes 6 sec1.21.83.4-1.81.2-0.8
Patch foraging time to switch 0 sec0.51.02.11.4-0.10.9
Patch foraging water rate 0 sec0.71.52.6-1.60.8-1.1
Patch foraging water rate 12 sec1.73.64.3-1.5-2.1-2.0
Patch foraging water rate 18 sec1.62.52.8-1.7-1.7-1.4
Patch foraging water rate 24 sec0.30.40.8-0.7-0.90.1
Patch foraging water rate 6 sec1.31.92.6-1.3-1.2-1.6
Seeking ratio, delayed vs. immediate footshock0.30.30.5-0.6-0.3-0.7
Distance traveled before self-admin0.20.30.7-0.1-0.80.4
Distance traveled after self-admin0.30.30.8-0.3-0.00.9
Extensor digitorum longus weight0.62.43.41.8-0.8-1.9
Bone: elastic displacement2.02.34.2-0.9-2.0-1.4
Bone: elastic work1.31.73.4-1.0-0.8-1.9
Bone: endosteal estimation8.117.835.70.96.04.1
Bone: endosteal perimeter6.714.332.20.25.73.3
Epididymis fat weight0.10.40.7-0.20.7-0.8
Delta time in closed arm before/after self-admin0.60.60.91.00.40.8
Delta time in open arm before/after self-admin0.20.20.4-0.5-0.3-0.6
Diff in mean of infusions in LGA sessions1.01.33.10.2-1.8-0.8
Delay discount exponential model param0.40.50.91.00.20.7
Extinction: sum of active levers before priming0.30.30.6-0.5-0.4-0.8
Active lever presses in extinction session 60.30.30.7-0.50.8-0.0
Bone: final force0.71.12.5-1.6-0.0-1.0
Bone: final moment0.71.22.5-1.6-0.1-1.0
Food consumed during 24 hour testing period0.70.91.4-0.31.2-1.1
Glucose0.50.82.2-0.1-1.5-0.3
Heart weight1.32.02.1-1.4-1.4-1.4
Delay discount hyperbolic model param0.30.30.60.80.10.5
Intermittent access intake day 1-15 change0.61.32.51.60.90.7
Intermittent access intake escalation0.51.01.41.21.10.6
Intermittent access intake escalation 22.32.63.61.91.81.0
Intermitt. access day 1 inactive lever presses0.20.71.9-0.11.40.2
Intermitt. access day 15 inactive lever presses0.30.61.00.81.00.1
Intermitt. access escalation Index0.81.13.30.3-1.80.0
Intermittent access day 1 total infusions1.42.35.5-2.3-0.7-1.0
Intermittent access day 15 total infusions0.40.61.2-1.10.3-0.7
Intermittent access terminal intake (last 3 days)0.40.61.4-0.51.2-0.1
Intermittent access total infusions1.11.33.4-1.80.3-0.6
Intermittent access day 1 locomotion1.92.56.2-2.50.0-1.1
Intermittent access day 15 total locomotion1.01.82.7-1.71.4-0.7
Intermittent access total locomotion3.03.68.3-2.91.0-1.2
Intermittent access standard deviation0.10.30.80.10.90.1
Left kidney weight0.83.64.6-2.1-1.8-1.7
Right kidney weight0.62.93.7-1.9-1.5-1.7
Cocaine induced anxiety0.30.50.8-0.7-0.9-0.3
Post-drug Anxiety0.30.40.7-0.5-0.8-0.3
Baseline Anxiety0.20.20.50.2-0.3-0.7
Tail length0.83.07.0-1.42.6-0.3
Length with tail0.73.18.9-0.63.00.2
Length without tail0.20.61.50.71.20.1
Times rat made contact with spout0.30.30.70.40.80.1
Lifetime Intake1.82.15.3-2.30.2-1.0
Liver weight, left1.11.83.5-0.31.91.3
Liver weight, right1.62.83.5-1.5-1.9-1.7
Locomotor activity2.03.27.5-2.7-0.8-1.2
Locomotor testing distance1.52.77.0-2.6-0.4-1.0
Locomotor testing rearing0.10.30.4-0.40.60.5
Locomotion in novel chamber0.40.51.20.3-0.41.1
Locomotion in novel chamber post-restriction0.71.12.10.11.51.1
Fecal boli incidents, locomotor time 10.30.50.70.80.30.8
Change in fecal boli incidents, locomotor task0.40.41.1-0.10.1-1.1
Time >=10cm from walls, locomotor time 10.70.81.30.5-1.10.9
Bouts of movement, locomotor time 10.40.41.00.2-0.5-1.0
Total resting periods, locomotor time 10.30.40.80.5-0.2-0.9
Rest time, locomotor task time 10.81.02.51.60.60.4
Distance moved, locomotor task time 10.10.20.4-0.5-0.0-0.6
Vertical activity count, locomotor time 10.10.10.2-0.4-0.3-0.3
Time >=10cm from walls, locomotor time 21.01.43.01.70.11.1
Bouts of movement, locomotor time 20.50.71.70.2-0.7-1.3
Total resting periods, locomotor time 20.40.71.3-0.1-0.9-1.2
Rest time, locomotor task time 20.70.91.61.0-1.30.2
Distance moved, locomotor task time 20.30.40.70.90.70.1
Vertical activity count, locomotor time 20.20.31.00.21.0-0.2
Light reinforcement 12.15.28.5-2.4-1.2-2.9
Light reinforcement 21.62.44.4-1.7-0.4-2.1
Bone: marrow area8.117.735.01.05.94.2
Bone: maximum diameter1.22.34.5-1.42.10.6
Bone: maximum force1.73.16.7-2.60.0-1.6
Bone: maximum moment1.62.96.0-2.50.1-1.6
Mean time between licks in bursts0.10.20.20.20.4-0.5
Mean num. licks in bursts0.10.20.50.00.3-0.7
Cd content in liver2.32.56.22.50.11.2
Co content in liver0.20.30.70.8-0.4-0.0
Cu content in liver0.30.30.60.60.80.3
Fe content in liver0.40.51.0-0.70.01.0
K content in liver0.10.10.2-0.30.40.4
Mg content in liver0.20.20.40.60.10.2
Mn content in liver0.40.41.0-1.0-0.5-0.1
Na content in liver0.20.20.3-0.60.00.6
Rb content in liver0.60.71.9-0.0-1.40.4
Se content in liver2.12.43.2-1.8-1.7-1.2
Sr content in liver0.30.30.40.20.6-0.7
Zn content in liver0.10.10.4-0.1-0.6-0.2
Bone: minimum diameter3.36.015.9-0.94.01.2
Time in familiar zone, hab. session 11.31.32.00.91.41.0
Time in novel zone, hab. session 11.71.72.6-0.7-1.6-1.5
Total zone transitions, hab. session 11.01.42.3-1.5-0.6-1.2
Total locomotion distance, hab. session 11.62.24.0-2.0-0.4-1.6
Locomotion velocity, hab. session 11.01.32.8-1.70.1-1.1
Time in familiar zone, hab. session 21.61.72.60.71.41.6
Time in novel zone, hab. session 21.31.32.1-0.6-1.2-1.5
Total zone transitions, hab. session 20.30.40.7-0.7-0.4-0.8
Total locomotion distance, hab. session 20.91.12.2-1.1-0.1-1.5
Locomotion velocity, hab. session 20.81.12.2-1.0-0.1-1.5
Novel to familiar place preference ratio0.40.50.6-0.70.5-0.7
Novelty place preference0.30.30.5-0.60.3-0.7
Time in novel zone, NPP test0.30.30.5-0.70.2-0.6
Total zone transitions, NPP test2.13.04.9-2.2-1.3-1.6
Total locomotion distance, NPP test0.50.71.6-1.3-0.0-0.8
Locomotion velocity, NPP test1.31.93.1-1.7-0.4-1.5
Intraocular pressure1.11.62.7-1.6-0.2-1.5
Delta distance traveled before/after self-admin0.40.40.9-0.9-0.4-0.5
Delta ambulatory time before/after self-admin0.20.20.5-0.70.1-0.5
Parametrial fat weight0.81.83.31.81.11.0
Pavlov. Cond. lever latency0.60.71.91.40.20.4
Pavlov. Cond. magazine entry latency0.70.91.7-1.31.00.2
Pavlov. Cond. change in total contacts0.50.51.2-1.10.60.1
Pavlov. Cond. index score0.60.82.1-1.40.6-0.0
Pavlov. Cond. latency score0.60.82.1-1.50.4-0.2
Pavlov. Cond. lever contacts0.10.20.3-0.50.40.2
Pavlov. Cond. magazine entry number0.60.81.71.3-0.7-0.4
Pavlov. Cond. intertrial magazine entries1.51.84.8-2.20.2-0.7
Pavlov. Cond. lever-magazine prob. diff.0.70.82.2-1.50.6-0.0
Pavlov. Cond. response bias0.70.91.9-1.40.80.4
Pavlov. Cond. lever latency0.30.41.01.0-0.2-0.5
Pavlov. Cond. magazine entry latency0.60.81.20.5-1.10.9
Pavlov. Cond. change in total contacts0.50.81.9-0.20.71.4
Pavlov. Cond. index score0.30.41.1-0.4-0.21.0
Pavlov. Cond. latency score0.40.51.3-0.4-0.41.1
Pavlov. Cond. lever contacts0.30.51.3-1.2-0.10.1
Pavlov. Cond. magazine entry number1.01.22.7-0.31.6-0.9
Pavlov. Cond. intertrial magazine entries3.14.613.60.33.7-0.5
Pavlov. Cond. lever-magazine prob. diff.0.30.51.2-0.3-0.21.1
Pavlov. Cond. response bias0.20.30.7-0.8-0.20.4
Time in closed arm before self-admin0.60.81.3-1.2-0.7-0.7
Time in closed arm after self-admin0.40.40.80.90.10.6
Time in open arm before self-admin0.40.40.60.7-0.80.2
Time in open arm after self-admin0.00.00.0-0.10.0-0.0
Bone: periosteal estimation2.45.012.5-1.13.51.2
Bone: periosteal perimeter1.01.83.6-1.31.90.5
Bone: post-yield work0.71.01.9-0.21.41.1
Progressive ratio test 1 active lever presses1.92.45.4-2.3-0.1-1.3
Progressive ratio test 1 breakpoint1.92.45.2-2.30.0-1.4
Progressive ratio test 1 inactive lever presses1.31.84.1-2.00.3-1.1
Progressive ratio test 2 active lever presses1.21.42.9-1.71.0-0.3
Progressive ratio test 2 breakpoint1.21.32.6-1.61.2-0.1
Progressive ratio test 2 inactive lever presses1.52.44.6-2.20.1-1.6
Incentive Sensitization - Responses0.50.81.8-0.41.30.6
Incentive Sensitization - Breakpoint0.70.92.0-0.31.40.7
Sum of active levers in priming session hrs 5-61.11.02.4-0.7-1.6-0.4
Progressive ratio0.30.51.20.50.41.1
Food seeking constrained by brief footshock4.35.38.21.82.92.1
Seeking ratio, punishment vs. effort0.50.72.1-0.01.40.2
Retroperitoneal fat weight0.20.81.70.21.3-0.8
Reaction time number correct0.61.11.6-1.1-1.3-0.6
Reaction time mean minus median0.30.71.71.30.00.5
Reaction time mean minus median AUC0.20.51.4-0.0-1.2-0.3
Reaction time num false alarms1.11.52.9-1.71.20.3
Reaction time num false alarms AUC0.91.42.2-1.41.50.3
Reaction time trials correct on left0.61.11.6-1.1-1.3-0.6
Reaction time trials on left0.61.11.5-1.1-1.2-0.6
Reaction time mean0.50.81.40.6-0.81.2
Reaction time mean AUC0.61.01.50.8-0.91.2
Median of all reaction times0.60.81.40.3-1.01.2
Reaction time omissions0.20.30.50.60.70.0
Reaction time false alarm rate1.11.53.5-0.41.90.9
Reaction time premature initiation rate0.91.31.9-1.40.2-1.4
Reaction time premature initiations1.01.82.7-1.6-0.3-1.6
Std. dev. reaction times0.81.52.91.70.21.2
Reaction time trials completed0.61.11.5-1.1-1.2-0.6
Reaction time trials AUC0.50.91.5-1.0-1.2-0.6
Run reversals in cocaine runway, females0.80.81.61.3-0.4-0.8
Run reversals in cocaine runway, males0.00.00.10.1-0.10.3
Latency to leave start box in cocaine runway0.20.20.6-0.1-0.7-0.0
Latency to leave start box in cocaine runway, F0.70.81.3-1.0-1.1-0.1
Latency to leave start box in cocaine runway, M0.70.61.61.30.10.5
Std. dev. time between licks in bursts0.00.10.10.30.1-0.3
Total sessions with >9 infusions3.64.46.9-2.6-1.4-2.0
Short access day 1 total inactive lever presses1.31.83.8-2.00.1-1.2
Short access day 10 total inactive lever presses0.10.20.6-0.20.1-0.8
Short access day 1 total infusions5.37.013.3-3.7-1.7-2.2
Short access day 10 total infusions1.92.44.7-2.20.1-1.6
Short access total infusions2.43.06.8-2.6-0.6-1.4
Short access day 1 locomotion6.68.214.2-3.8-0.9-3.1
Short access day 10 total locomotion0.91.72.3-1.41.5-0.9
Short access total locomotion3.34.07.4-2.70.0-2.2
One hour access (0.3 mA shock)0.20.20.4-0.40.70.4
Compulsive drug intake0.40.50.80.7-0.60.9
One hour access (shock baseline)0.30.50.8-0.70.9-0.4
Social response proportion0.10.10.2-0.3-0.4-0.3
Social responses0.50.61.1-1.1-0.5-0.6
Social time1.01.32.31.20.31.5
Soleus weight0.51.42.7-1.6-0.8-1.0
Bone: stiffness0.50.92.4-1.60.2-0.4
Tibialis anterior weight0.51.64.60.20.4-2.1
Time to tail flick, vehicle, before self-admin1.81.84.01.20.42.0
Time to tail flick, vehicle, after self-admin0.10.10.3-0.5-0.2-0.1
Time to tail flick, test, before self-admin0.70.71.01.00.41.0
Time to tail flick, test, after self-admin0.00.00.0-0.20.2-0.1
Delta time to tail flick, vehicle, before/after SA0.50.51.30.21.2-0.4
Delta time to tail flick, test, before/after SA0.10.10.2-0.50.10.2
Tibia length1.13.05.5-2.3-1.5-1.2
Ambulatory time before self-admin0.10.20.30.0-0.50.5
Ambulatory time after self-admin0.10.20.5-0.7-0.10.1
Bone: tissue strength1.71.72.7-1.4-1.6-0.7
Total heroin consumption0.40.50.9-0.7-0.11.0
Bone: trabecular number0.20.30.6-0.60.8-0.1
Bone: trabecular spacing0.30.40.70.80.10.7
Bone: trabecular thickness0.50.61.0-0.60.8-1.0
Bone: trabecular tissue density2.84.24.9-1.9-2.0-2.2
Water consumed over 24 hours0.40.51.3-0.3-0.2-1.1
Number of responses in last shaping day0.70.71.2-1.1-0.5-0.9