Nol11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Nol11 0.1 0.05 1.9e-05 0.05 0.07 0.06 0.06 3.0e-05 6.8e-07 2.3e-06 7.8e-06
2 PL gene expression Nol11 0.03 0.02 4.3e-03 0.02 0.02 0.02 0.02 1.0e-03 6.5e-03 1.7e-03 2.3e-03
3 Brain mRNA stability Nol11 0.09 0.05 5.8e-05 0.01 0.04 0.04 0.02 6.0e-02 1.5e-04 1.2e-04 5.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.3-0.3-0.50.5
Area under the delay curve0.40.61.1-1.10.40.8
BMI with tail2.06.814.1-2.50.23.8
BMI without tail1.79.015.4-3.4-0.73.9
Body weight1.67.19.6-2.9-1.83.1
Weight adjusted by age0.10.20.5-0.40.7-0.1
Bone surface1.22.45.9-0.2-2.4-1.1
Bone volume0.71.33.5-0.7-1.9-0.2
Breakpoint value in progressive ratio session0.10.20.40.20.2-0.6
Number of licking bursts0.00.10.20.0-0.1-0.4
Context. condit. distance diff. score0.10.10.2-0.40.2-0.1
Locomotion velocity, session 10.20.20.3-0.6-0.30.4
Locomotion distance, session 11.11.42.4-1.60.61.2
Locomotion velocity, session 20.80.92.30.0-0.7-1.5
Locomotion distance, session 20.40.51.0-1.00.7-0.0
Locomotion velocity, session 31.72.02.5-1.51.61.1
Locomotion distance, session 30.20.20.4-0.60.3-0.5
Stereotopy head waving bouts, day 30.70.91.5-0.31.01.2
Stereotopy head waving duration, day 30.81.01.4-0.71.11.2
Locomotion velocity, session 70.10.10.30.50.40.2
Locomotion distance, session 70.10.10.2-0.20.2-0.5
Stereotopy head waving bouts, day 70.60.61.7-0.41.30.3
Stereotopy head waving duration, day 70.60.82.20.21.5-0.3
Locomotion velocity, session 80.81.01.20.8-1.1-1.1
Locomotion distance, session 80.10.20.4-0.60.1-0.3
Degree of sensitization distance0.10.20.30.4-0.6-0.1
Degree of sensitization stereotypy0.80.92.4-0.61.6-0.0
Conditioned locomotion0.10.10.30.1-0.5-0.2
Cocaine response after cond. corrected0.30.40.70.70.3-0.8
Cocaine response after cond. not corrected0.71.02.10.90.3-1.5
Cocaine response before conditioning0.10.20.2-0.40.4-0.4
Saline control response0.20.30.3-0.5-0.60.6
Bone: connectivity density0.20.41.1-0.1-1.1-0.2
Bone: cortical apparent density3.86.19.0-1.32.73.0
Bone: cortical area2.43.96.8-2.60.52.2
Bone: cortical porosity1.61.82.9-0.0-1.6-1.7
Bone: cortical porosity0.70.81.1-1.0-0.9-0.6
Bone: cortical thickness11.919.925.0-3.54.85.0
Bone: cortical thickness4.96.08.1-1.92.82.5
Bone: cortical tissue density3.55.68.4-1.22.62.9
Condit. Reinf. active minus inactive responses1.01.12.2-1.5-0.8-0.7
Condit. Reinf. active-inactive response ratio0.50.61.0-0.5-0.7-1.0
Condit. Reinf. active responses1.01.32.4-1.5-1.1-0.6
Condit. Reinf. inactive responses0.40.51.0-1.0-0.70.2
Incentive salience index mean0.60.81.0-1.0-0.9-0.7
Condit. Reinf. lever presses0.10.10.2-0.2-0.2-0.5
Condit. Reinf. active minus inactive responses1.32.04.5-2.1-1.1-0.6
Condit. Reinf. active-inactive response ratio0.71.12.0-0.5-1.1-1.4
Condit. Reinf. active responses1.72.54.7-2.2-1.6-0.2
Condit. Reinf. inactive responses1.52.24.8-2.2-0.71.2
Condit. Reinf. lever presses0.81.23.3-1.8-0.6-0.0
Condit. Reinf. lever reinforcers received1.52.13.7-1.9-1.6-0.2
Conditioned reinforcement - actives0.20.61.1-1.0-0.00.9
Conditioned reinforcement - inactives0.10.30.4-0.5-0.60.4
Conditioned locomotion0.60.91.6-0.8-1.30.5
Patch foraging indifference point 0 sec1.13.16.5-2.6-1.01.3
Patch foraging indifference point AUC0.30.71.8-0.5-1.30.2
Delay disc. indifference point, 0s delay0.10.10.20.30.50.0
Delay disc. indifference point, 16s delay0.91.21.8-1.30.31.4
Delay disc. indifference point, 2s delay0.20.20.3-0.6-0.50.0
Delay disc. indifference point, 24s delay1.32.13.2-1.7-0.31.8
Delay disc. indifference point, 4s delay0.20.20.7-0.20.8-0.1
Delay disc. indifference point, 8s delay0.40.60.8-0.70.70.9
Indifference point function ln k0.82.33.6-1.41.91.2
Indifference point function log k0.82.33.6-1.41.91.2
Patch foraging total patch changes 0 sec0.92.85.7-2.4-1.11.2
Patch foraging total patch changes 12 sec1.82.46.4-0.8-2.5-0.4
Patch foraging total patch changes 18 sec0.41.11.6-1.3-1.20.3
Patch foraging total patch changes 24 sec0.82.75.0-2.2-1.21.2
Patch foraging total patch changes 6 sec1.11.83.4-1.8-1.20.8
Patch foraging time to switch 0 sec0.31.02.11.40.1-0.9
Patch foraging water rate 0 sec0.41.52.6-1.6-0.81.1
Patch foraging water rate 12 sec0.93.64.3-1.52.12.0
Patch foraging water rate 18 sec1.12.52.8-1.71.71.4
Patch foraging water rate 24 sec0.30.40.8-0.70.9-0.1
Patch foraging water rate 6 sec1.31.92.6-1.31.21.6
Seeking ratio, delayed vs. immediate footshock0.20.30.5-0.60.30.7
Distance traveled before self-admin0.10.30.7-0.10.8-0.4
Distance traveled after self-admin0.20.30.8-0.30.0-0.9
Extensor digitorum longus weight0.62.33.11.80.81.8
Bone: elastic displacement1.82.34.2-0.92.01.4
Bone: elastic work1.31.73.6-1.00.81.9
Bone: endosteal estimation7.217.735.70.9-6.0-4.1
Bone: endosteal perimeter5.814.132.20.2-5.7-3.2
Epididymis fat weight0.10.40.8-0.2-0.70.9
Delta time in closed arm before/after self-admin0.60.60.91.0-0.4-0.8
Delta time in open arm before/after self-admin0.20.20.4-0.50.30.6
Diff in mean of infusions in LGA sessions0.71.33.10.21.80.8
Delay discount exponential model param0.30.50.91.0-0.2-0.6
Extinction: sum of active levers before priming0.20.30.6-0.50.40.8
Active lever presses in extinction session 60.30.30.7-0.5-0.80.1
Bone: final force0.71.22.5-1.60.01.0
Bone: final moment0.71.22.5-1.60.11.0
Food consumed during 24 hour testing period0.50.91.4-0.3-1.21.2
Glucose0.50.82.2-0.11.50.3
Heart weight1.22.02.1-1.41.41.4
Delay discount hyperbolic model param0.20.30.60.8-0.1-0.5
Intermittent access intake day 1-15 change0.21.32.51.6-0.9-0.7
Intermittent access intake escalation0.21.01.41.2-1.1-0.6
Intermittent access intake escalation 21.62.63.61.9-1.8-1.0
Intermitt. access day 1 inactive lever presses0.10.71.9-0.1-1.4-0.2
Intermitt. access day 15 inactive lever presses0.10.61.00.8-1.0-0.1
Intermitt. access escalation Index0.41.13.30.31.8-0.1
Intermittent access day 1 total infusions0.82.35.5-2.30.71.0
Intermittent access day 15 total infusions0.20.61.2-1.1-0.30.7
Intermittent access terminal intake (last 3 days)0.30.61.4-0.5-1.20.1
Intermittent access total infusions1.11.33.4-1.8-0.30.7
Intermittent access day 1 locomotion1.42.56.2-2.5-0.01.2
Intermittent access day 15 total locomotion0.51.82.7-1.7-1.40.8
Intermittent access total locomotion3.13.78.3-2.9-1.01.3
Intermittent access standard deviation0.10.30.80.1-0.9-0.1
Left kidney weight0.43.64.6-2.11.81.7
Right kidney weight0.42.93.7-1.91.51.7
Cocaine induced anxiety0.20.50.8-0.70.90.3
Post-drug Anxiety0.30.40.7-0.50.80.3
Baseline Anxiety0.10.20.50.20.30.7
Tail length0.63.07.0-1.4-2.60.4
Length with tail0.73.18.9-0.6-3.0-0.2
Length without tail0.10.71.50.7-1.2-0.1
Times rat made contact with spout0.30.30.70.4-0.8-0.1
Lifetime Intake1.82.25.3-2.3-0.21.1
Liver weight, left1.01.73.5-0.3-1.9-1.3
Liver weight, right1.62.83.5-1.51.91.7
Locomotor activity2.13.27.5-2.70.81.3
Locomotor testing distance1.12.87.0-2.60.41.1
Locomotor testing rearing0.10.30.4-0.4-0.6-0.5
Locomotion in novel chamber0.40.51.20.30.4-1.1
Locomotion in novel chamber post-restriction0.41.12.10.1-1.5-1.1
Fecal boli incidents, locomotor time 10.20.50.70.8-0.3-0.8
Change in fecal boli incidents, locomotor task0.40.41.1-0.1-0.11.1
Time >=10cm from walls, locomotor time 10.60.81.30.51.1-0.9
Bouts of movement, locomotor time 10.30.40.90.20.51.0
Total resting periods, locomotor time 10.30.30.80.50.20.9
Rest time, locomotor task time 10.61.02.51.6-0.6-0.4
Distance moved, locomotor task time 10.10.20.4-0.50.00.7
Vertical activity count, locomotor time 10.00.10.2-0.40.30.4
Time >=10cm from walls, locomotor time 20.51.43.01.7-0.1-1.1
Bouts of movement, locomotor time 20.20.71.60.20.71.3
Total resting periods, locomotor time 20.20.71.3-0.10.91.1
Rest time, locomotor task time 20.50.91.61.01.3-0.2
Distance moved, locomotor task time 20.30.40.70.9-0.7-0.1
Vertical activity count, locomotor time 20.10.31.00.2-1.00.3
Light reinforcement 11.25.28.6-2.41.22.9
Light reinforcement 21.12.44.4-1.70.42.1
Bone: marrow area7.217.635.01.0-5.9-4.1
Bone: maximum diameter1.12.24.5-1.4-2.1-0.5
Bone: maximum force1.63.26.7-2.6-0.01.7
Bone: maximum moment1.52.96.0-2.5-0.11.7
Mean time between licks in bursts0.00.20.20.2-0.40.5
Mean num. licks in bursts0.10.20.50.0-0.30.7
Cd content in liver2.32.66.22.5-0.1-1.2
Co content in liver0.20.30.70.80.40.0
Cu content in liver0.30.30.60.6-0.8-0.3
Fe content in liver0.40.50.9-0.7-0.0-1.0
K content in liver0.10.10.2-0.3-0.4-0.4
Mg content in liver0.10.20.40.6-0.1-0.2
Mn content in liver0.40.41.0-1.00.50.1
Na content in liver0.20.20.3-0.6-0.0-0.5
Rb content in liver0.60.71.9-0.01.4-0.4
Se content in liver2.12.43.2-1.81.71.1
Sr content in liver0.30.30.50.2-0.60.7
Zn content in liver0.10.10.4-0.10.60.1
Bone: minimum diameter3.16.015.9-0.9-4.0-1.1
Time in familiar zone, hab. session 11.21.32.00.9-1.4-1.0
Time in novel zone, hab. session 11.51.72.6-0.71.61.5
Total zone transitions, hab. session 11.01.42.3-1.50.61.2
Total locomotion distance, hab. session 11.62.34.0-2.00.41.6
Locomotion velocity, hab. session 11.01.42.8-1.7-0.11.1
Time in familiar zone, hab. session 21.51.72.50.7-1.4-1.6
Time in novel zone, hab. session 21.21.32.0-0.61.21.4
Total zone transitions, hab. session 20.30.40.7-0.70.40.9
Total locomotion distance, hab. session 20.91.22.3-1.10.11.5
Locomotion velocity, hab. session 20.81.12.3-1.00.11.5
Novel to familiar place preference ratio0.30.50.5-0.7-0.50.7
Novelty place preference0.30.30.5-0.6-0.30.7
Time in novel zone, NPP test0.20.30.5-0.7-0.20.6
Total zone transitions, NPP test2.03.04.9-2.21.31.6
Total locomotion distance, NPP test0.50.71.6-1.30.00.8
Locomotion velocity, NPP test1.31.93.1-1.70.41.6
Intraocular pressure1.01.62.7-1.60.21.5
Delta distance traveled before/after self-admin0.40.40.9-0.90.40.5
Delta ambulatory time before/after self-admin0.10.20.5-0.7-0.10.5
Parametrial fat weight0.81.83.31.8-1.1-1.0
Pavlov. Cond. lever latency0.60.71.91.4-0.2-0.5
Pavlov. Cond. magazine entry latency0.70.91.7-1.3-1.0-0.2
Pavlov. Cond. change in total contacts0.50.51.2-1.1-0.6-0.0
Pavlov. Cond. index score0.60.82.1-1.4-0.60.1
Pavlov. Cond. latency score0.60.82.1-1.5-0.40.3
Pavlov. Cond. lever contacts0.10.20.3-0.5-0.4-0.2
Pavlov. Cond. magazine entry number0.60.81.71.30.70.3
Pavlov. Cond. intertrial magazine entries1.51.84.8-2.2-0.20.7
Pavlov. Cond. lever-magazine prob. diff.0.70.82.2-1.5-0.60.1
Pavlov. Cond. response bias0.70.91.9-1.4-0.8-0.3
Pavlov. Cond. lever latency0.30.41.01.00.20.4
Pavlov. Cond. magazine entry latency0.50.81.20.51.1-0.9
Pavlov. Cond. change in total contacts0.30.81.8-0.2-0.7-1.3
Pavlov. Cond. index score0.30.41.0-0.40.2-1.0
Pavlov. Cond. latency score0.30.51.3-0.40.4-1.1
Pavlov. Cond. lever contacts0.30.51.3-1.20.1-0.1
Pavlov. Cond. magazine entry number0.91.22.7-0.3-1.61.0
Pavlov. Cond. intertrial magazine entries2.14.713.60.3-3.70.5
Pavlov. Cond. lever-magazine prob. diff.0.30.41.2-0.30.2-1.1
Pavlov. Cond. response bias0.20.30.7-0.80.2-0.4
Time in closed arm before self-admin0.50.81.3-1.20.70.8
Time in closed arm after self-admin0.30.40.80.9-0.1-0.6
Time in open arm before self-admin0.30.40.60.70.8-0.2
Time in open arm after self-admin0.00.00.0-0.1-0.00.0
Bone: periosteal estimation2.15.012.5-1.1-3.5-1.1
Bone: periosteal perimeter0.91.83.6-1.3-1.9-0.5
Bone: post-yield work0.61.01.9-0.2-1.4-1.0
Progressive ratio test 1 active lever presses1.42.55.4-2.30.11.4
Progressive ratio test 1 breakpoint1.42.45.2-2.3-0.01.4
Progressive ratio test 1 inactive lever presses0.71.94.1-2.0-0.31.2
Progressive ratio test 2 active lever presses1.01.42.9-1.7-1.00.3
Progressive ratio test 2 breakpoint1.01.32.6-1.6-1.20.2
Progressive ratio test 2 inactive lever presses0.82.44.6-2.2-0.11.6
Incentive Sensitization - Responses0.30.81.8-0.4-1.3-0.6
Incentive Sensitization - Breakpoint0.40.92.0-0.3-1.4-0.7
Sum of active levers in priming session hrs 5-61.11.02.4-0.71.60.4
Progressive ratio0.20.51.20.5-0.4-1.1
Food seeking constrained by brief footshock4.25.28.21.8-2.9-2.0
Seeking ratio, punishment vs. effort0.30.72.1-0.0-1.4-0.2
Retroperitoneal fat weight0.20.81.70.2-1.30.8
Reaction time number correct0.31.11.6-1.11.30.6
Reaction time mean minus median0.10.71.71.3-0.0-0.5
Reaction time mean minus median AUC0.10.51.4-0.01.20.3
Reaction time num false alarms0.91.52.9-1.7-1.2-0.2
Reaction time num false alarms AUC0.61.42.2-1.4-1.5-0.3
Reaction time trials correct on left0.31.11.6-1.11.30.6
Reaction time trials on left0.31.11.5-1.11.20.6
Reaction time mean0.40.81.50.60.8-1.2
Reaction time mean AUC0.41.01.50.80.9-1.2
Median of all reaction times0.50.81.40.31.0-1.2
Reaction time omissions0.20.30.50.6-0.7-0.1
Reaction time false alarm rate1.01.43.5-0.4-1.9-0.8
Reaction time premature initiation rate0.81.32.0-1.4-0.21.4
Reaction time premature initiations0.61.82.7-1.60.31.6
Std. dev. reaction times0.51.52.91.7-0.2-1.3
Reaction time trials completed0.31.11.5-1.11.20.6
Reaction time trials AUC0.30.91.5-1.01.20.6
Run reversals in cocaine runway, females0.70.81.61.30.40.8
Run reversals in cocaine runway, males0.00.00.10.10.1-0.3
Latency to leave start box in cocaine runway0.10.20.6-0.10.70.0
Latency to leave start box in cocaine runway, F0.60.81.3-1.01.10.1
Latency to leave start box in cocaine runway, M0.60.61.61.3-0.1-0.5
Std. dev. time between licks in bursts0.00.10.10.3-0.10.3
Total sessions with >9 infusions3.64.46.9-2.61.42.1
Short access day 1 total inactive lever presses0.91.83.8-2.0-0.11.3
Short access day 10 total inactive lever presses0.00.20.6-0.2-0.10.8
Short access day 1 total infusions3.67.113.3-3.71.72.2
Short access day 10 total infusions1.52.54.7-2.2-0.11.7
Short access total infusions2.23.16.8-2.60.61.5
Short access day 1 locomotion5.08.314.2-3.80.93.1
Short access day 10 total locomotion0.41.72.3-1.4-1.50.9
Short access total locomotion2.74.17.4-2.7-0.02.2
One hour access (0.3 mA shock)0.20.20.4-0.4-0.7-0.4
Compulsive drug intake0.40.50.80.70.6-0.9
One hour access (shock baseline)0.20.50.8-0.7-0.90.4
Social response proportion0.10.10.2-0.30.40.3
Social responses0.50.61.1-1.10.50.6
Social time0.91.42.41.2-0.3-1.6
Soleus weight0.51.42.7-1.60.81.0
Bone: stiffness0.50.92.4-1.6-0.20.4
Tibialis anterior weight0.51.64.50.2-0.42.1
Time to tail flick, vehicle, before self-admin1.51.94.11.2-0.4-2.0
Time to tail flick, vehicle, after self-admin0.10.10.3-0.50.20.1
Time to tail flick, test, before self-admin0.60.71.01.0-0.4-1.0
Time to tail flick, test, after self-admin0.00.00.0-0.2-0.20.1
Delta time to tail flick, vehicle, before/after SA0.50.51.30.2-1.20.4
Delta time to tail flick, test, before/after SA0.10.10.2-0.5-0.1-0.2
Tibia length1.13.15.5-2.31.51.2
Ambulatory time before self-admin0.10.20.30.00.5-0.5
Ambulatory time after self-admin0.10.20.5-0.70.1-0.1
Bone: tissue strength1.61.72.7-1.41.60.7
Total heroin consumption0.40.50.9-0.70.1-0.9
Bone: trabecular number0.20.40.6-0.6-0.80.1
Bone: trabecular spacing0.30.40.70.8-0.1-0.7
Bone: trabecular thickness0.50.61.0-0.6-0.81.0
Bone: trabecular tissue density2.44.24.9-1.92.02.2
Water consumed over 24 hours0.30.51.3-0.30.21.1
Number of responses in last shaping day0.60.71.2-1.10.50.9