Noct

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Noct 0.06 0.04 3.0e-05 0.03 0.03 0.03 0.03 2.4e-04 7.0e-04 7.6e-04 6.0e-04
2 LHb gene expression Noct 0.17 0.11 1.7e-03 0.09 0.07 0.08 0.08 3.9e-03 1.0e-02 7.4e-03 5.7e-03
3 Liver gene expression Noct 0.05 0.03 2.1e-04 0.03 0.03 0.02 0.02 6.7e-04 4.4e-04 1.3e-03 8.8e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.52.30.5-1.5-1.4
Area under the delay curve0.40.51.0-0.2-0.7-1.0
BMI with tail0.82.95.2-2.31.8-0.5
BMI without tail0.10.40.9-0.4-0.5-1.0
Body weight0.62.44.7-2.21.5-0.6
Weight adjusted by age0.10.10.2-0.30.40.2
Bone surface0.61.22.3-1.50.7-0.8
Bone volume0.30.61.0-1.00.3-0.8
Breakpoint value in progressive ratio session0.40.50.9-0.2-0.7-1.0
Number of licking bursts0.10.20.3-0.30.50.3
Context. condit. distance diff. score1.72.13.51.9-1.60.4
Locomotion velocity, session 13.33.65.3-2.32.30.1
Locomotion distance, session 12.12.64.1-1.82.00.5
Locomotion velocity, session 25.36.211.1-2.53.31.1
Locomotion distance, session 23.85.29.2-1.63.02.0
Locomotion velocity, session 31.21.42.61.20.31.6
Locomotion distance, session 30.80.91.51.1-0.11.2
Stereotopy head waving bouts, day 30.60.71.2-0.61.10.7
Stereotopy head waving duration, day 30.81.01.7-0.91.30.7
Locomotion velocity, session 70.40.40.90.7-0.9-0.2
Locomotion distance, session 71.01.32.31.2-1.5-0.2
Stereotopy head waving bouts, day 70.60.71.3-0.20.91.1
Stereotopy head waving duration, day 70.50.61.50.00.71.2
Locomotion velocity, session 80.91.11.8-1.21.30.4
Locomotion distance, session 81.21.83.70.01.31.9
Degree of sensitization distance1.01.11.70.3-1.3-1.2
Degree of sensitization stereotypy0.10.20.40.10.30.6
Conditioned locomotion1.11.22.21.5-0.41.2
Cocaine response after cond. corrected0.30.40.70.8-0.60.4
Cocaine response after cond. not corrected0.20.20.30.5-0.60.1
Cocaine response before conditioning1.11.31.9-1.40.3-1.4
Saline control response0.50.71.1-0.10.91.1
Bone: connectivity density1.42.34.7-0.4-1.4-2.2
Bone: cortical apparent density0.60.81.51.2-0.41.0
Bone: cortical area1.62.54.2-2.11.7-0.5
Bone: cortical porosity0.20.20.3-0.60.5-0.3
Bone: cortical porosity0.60.71.2-1.10.7-0.6
Bone: cortical thickness0.20.40.6-0.80.3-0.7
Bone: cortical thickness0.10.10.1-0.30.3-0.1
Bone: cortical tissue density0.60.91.41.2-0.41.0
Condit. Reinf. active minus inactive responses0.10.10.20.00.10.4
Condit. Reinf. active-inactive response ratio0.60.61.01.0-0.90.3
Condit. Reinf. active responses0.91.11.9-0.91.40.8
Condit. Reinf. inactive responses2.93.66.5-1.92.60.8
Incentive salience index mean1.62.03.3-1.41.80.9
Condit. Reinf. lever presses4.86.811.4-2.83.41.1
Condit. Reinf. active minus inactive responses0.10.10.10.2-0.4-0.2
Condit. Reinf. active-inactive response ratio1.61.83.31.8-1.30.7
Condit. Reinf. active responses1.11.52.7-1.61.4-0.3
Condit. Reinf. inactive responses4.35.610.0-3.22.5-0.7
Condit. Reinf. lever presses1.11.52.7-0.21.41.6
Condit. Reinf. lever reinforcers received1.21.62.8-1.71.4-0.3
Conditioned reinforcement - actives2.13.66.0-2.1-0.7-2.5
Conditioned reinforcement - inactives1.21.74.1-2.00.8-0.6
Conditioned locomotion1.62.04.2-2.01.4-0.2
Patch foraging indifference point 0 sec0.91.83.1-0.71.71.3
Patch foraging indifference point AUC0.10.10.30.20.00.5
Delay disc. indifference point, 0s delay1.51.73.5-0.8-1.0-1.9
Delay disc. indifference point, 16s delay0.30.30.7-0.4-0.3-0.8
Delay disc. indifference point, 2s delay0.40.40.8-0.7-0.2-0.9
Delay disc. indifference point, 24s delay2.32.54.01.8-2.0-0.7
Delay disc. indifference point, 4s delay0.50.60.9-0.9-0.0-0.9
Delay disc. indifference point, 8s delay1.11.32.00.5-1.4-1.2
Indifference point function ln k0.00.10.1-0.30.3-0.2
Indifference point function log k0.00.10.1-0.30.3-0.2
Patch foraging total patch changes 0 sec0.61.22.2-0.81.50.9
Patch foraging total patch changes 12 sec0.20.30.3-0.30.60.6
Patch foraging total patch changes 18 sec0.60.91.6-0.61.30.9
Patch foraging total patch changes 24 sec0.61.01.5-0.51.21.2
Patch foraging total patch changes 6 sec1.82.74.5-1.32.11.4
Patch foraging time to switch 0 sec0.10.20.30.6-0.60.1
Patch foraging water rate 0 sec0.20.40.5-0.70.3-0.7
Patch foraging water rate 12 sec0.30.71.3-1.20.5-0.7
Patch foraging water rate 18 sec0.10.10.2-0.40.3-0.2
Patch foraging water rate 24 sec0.20.30.5-0.70.70.2
Patch foraging water rate 6 sec0.20.30.4-0.60.2-0.7
Seeking ratio, delayed vs. immediate footshock0.81.01.9-0.1-1.0-1.4
Distance traveled before self-admin0.50.61.31.1-0.30.8
Distance traveled after self-admin2.42.96.10.81.42.5
Extensor digitorum longus weight1.76.610.8-1.63.32.6
Bone: elastic displacement4.65.39.83.1-1.61.9
Bone: elastic work0.91.22.70.60.81.6
Bone: endosteal estimation1.94.16.5-2.62.4-0.0
Bone: endosteal perimeter0.61.22.1-1.51.0-0.6
Epididymis fat weight0.10.20.3-0.50.2-0.6
Delta time in closed arm before/after self-admin1.61.52.50.1-1.4-1.6
Delta time in open arm before/after self-admin2.52.44.01.80.32.0
Diff in mean of infusions in LGA sessions0.30.30.70.50.30.8
Delay discount exponential model param0.50.50.9-0.00.80.9
Extinction: sum of active levers before priming0.91.01.51.2-1.1-0.3
Active lever presses in extinction session 60.40.40.7-0.2-0.6-0.8
Bone: final force1.52.53.9-2.01.9-0.1
Bone: final moment1.93.04.9-2.02.20.2
Food consumed during 24 hour testing period0.50.71.70.30.61.3
Glucose0.40.71.31.2-0.80.3
Heart weight1.62.45.6-1.0-0.8-2.4
Delay discount hyperbolic model param0.60.61.20.10.81.1
Intermittent access intake day 1-15 change0.40.81.70.70.71.3
Intermittent access intake escalation0.40.71.40.60.61.2
Intermittent access intake escalation 22.22.54.41.70.52.1
Intermitt. access day 1 inactive lever presses0.41.63.5-1.91.0-0.5
Intermitt. access day 15 inactive lever presses0.20.30.50.6-0.7-0.4
Intermitt. access escalation Index1.52.13.61.1-1.9-1.3
Intermittent access day 1 total infusions1.72.75.7-2.40.6-1.4
Intermittent access day 15 total infusions0.50.71.5-1.20.2-0.8
Intermittent access terminal intake (last 3 days)0.71.02.0-1.41.0-0.1
Intermittent access total infusions1.61.93.8-2.00.3-1.3
Intermittent access day 1 locomotion1.82.35.1-2.20.7-1.1
Intermittent access day 15 total locomotion1.01.93.9-2.01.3-0.1
Intermittent access total locomotion2.12.55.1-2.31.6-0.1
Intermittent access standard deviation0.00.00.00.10.10.2
Left kidney weight0.10.40.70.10.70.8
Right kidney weight0.31.32.51.10.41.6
Cocaine induced anxiety0.10.20.30.6-0.40.1
Post-drug Anxiety0.91.02.00.90.51.4
Baseline Anxiety1.21.42.50.11.31.6
Tail length0.10.50.80.0-0.8-0.9
Length with tail0.10.50.9-0.90.80.0
Length without tail1.13.56.3-1.92.50.7
Times rat made contact with spout0.70.81.80.60.41.3
Lifetime Intake2.53.15.7-2.40.1-1.9
Liver weight, left0.60.91.5-1.11.20.4
Liver weight, right1.32.23.7-1.41.90.9
Locomotor activity1.82.84.9-1.82.20.5
Locomotor testing distance0.81.42.2-1.41.50.1
Locomotor testing rearing0.30.71.1-1.01.00.0
Locomotion in novel chamber0.50.61.30.30.81.1
Locomotion in novel chamber post-restriction0.91.52.7-1.4-0.1-1.6
Fecal boli incidents, locomotor time 10.10.20.40.6-0.30.2
Change in fecal boli incidents, locomotor task0.10.10.2-0.40.3-0.0
Time >=10cm from walls, locomotor time 10.00.00.10.00.20.2
Bouts of movement, locomotor time 12.63.05.9-1.5-0.8-2.4
Total resting periods, locomotor time 13.13.46.8-1.7-0.8-2.6
Rest time, locomotor task time 12.02.54.9-1.5-0.7-2.2
Distance moved, locomotor task time 11.92.85.82.4-0.71.4
Vertical activity count, locomotor time 12.25.28.02.80.22.8
Time >=10cm from walls, locomotor time 20.10.20.4-0.3-0.2-0.6
Bouts of movement, locomotor time 23.55.611.7-1.3-1.8-3.4
Total resting periods, locomotor time 22.84.910.3-1.5-1.5-3.2
Rest time, locomotor task time 20.60.81.8-1.30.7-0.5
Distance moved, locomotor task time 21.21.42.71.7-1.20.2
Vertical activity count, locomotor time 21.31.82.81.70.01.6
Light reinforcement 10.10.10.2-0.40.50.2
Light reinforcement 22.23.35.0-2.22.20.3
Bone: marrow area2.04.36.6-2.62.50.1
Bone: maximum diameter2.34.36.9-2.42.60.3
Bone: maximum force1.01.82.9-1.61.70.1
Bone: maximum moment1.32.34.1-1.62.00.4
Mean time between licks in bursts0.40.91.6-0.71.20.9
Mean num. licks in bursts0.30.50.91.0-0.60.3
Cd content in liver0.20.20.3-0.4-0.0-0.6
Co content in liver0.30.30.70.4-0.8-0.2
Cu content in liver0.10.10.2-0.10.20.5
Fe content in liver1.72.03.11.8-1.7-0.2
K content in liver3.02.95.2-2.31.8-0.5
Mg content in liver2.42.54.8-2.21.5-0.7
Mn content in liver1.11.32.9-0.4-0.8-1.7
Na content in liver1.71.82.8-1.71.70.1
Rb content in liver0.10.10.1-0.00.30.3
Se content in liver0.30.30.8-0.3-0.3-0.9
Sr content in liver1.91.72.50.6-1.5-1.6
Zn content in liver0.70.71.4-0.9-0.0-1.2
Bone: minimum diameter1.83.35.9-2.41.4-1.4
Time in familiar zone, hab. session 11.51.52.4-0.41.51.4
Time in novel zone, hab. session 12.22.23.60.5-1.9-1.7
Total zone transitions, hab. session 11.72.43.7-1.91.90.2
Total locomotion distance, hab. session 10.30.40.8-0.60.9-0.1
Locomotion velocity, hab. session 10.10.20.5-0.30.70.0
Time in familiar zone, hab. session 20.10.10.1-0.00.30.2
Time in novel zone, hab. session 21.11.11.71.2-1.30.0
Total zone transitions, hab. session 24.25.38.7-2.63.00.6
Total locomotion distance, hab. session 20.81.12.1-1.01.50.4
Locomotion velocity, hab. session 21.31.83.1-1.51.80.1
Novel to familiar place preference ratio0.00.00.0-0.1-0.0-0.1
Novelty place preference0.00.00.0-0.0-0.1-0.0
Time in novel zone, NPP test0.00.00.10.3-0.20.2
Total zone transitions, NPP test1.52.23.6-1.91.70.0
Total locomotion distance, NPP test1.11.52.5-1.61.3-0.4
Locomotion velocity, NPP test1.11.62.7-1.61.4-0.3
Intraocular pressure0.60.81.30.1-1.1-1.1
Delta distance traveled before/after self-admin2.12.23.7-0.11.71.9
Delta ambulatory time before/after self-admin1.31.62.90.21.31.7
Parametrial fat weight0.51.32.2-0.71.51.1
Pavlov. Cond. lever latency5.36.611.52.5-3.4-1.5
Pavlov. Cond. magazine entry latency0.10.20.3-0.20.60.4
Pavlov. Cond. change in total contacts1.61.72.6-1.61.60.1
Pavlov. Cond. index score2.22.74.8-1.42.21.2
Pavlov. Cond. latency score2.73.46.0-1.82.51.0
Pavlov. Cond. lever contacts4.65.69.6-2.43.11.2
Pavlov. Cond. magazine entry number0.50.60.90.1-0.9-1.0
Pavlov. Cond. intertrial magazine entries0.70.81.21.1-1.1-0.1
Pavlov. Cond. lever-magazine prob. diff.2.02.54.4-1.32.11.1
Pavlov. Cond. response bias1.92.34.1-1.12.01.3
Pavlov. Cond. lever latency2.43.25.22.0-2.3-0.8
Pavlov. Cond. magazine entry latency3.03.66.1-0.52.12.5
Pavlov. Cond. change in total contacts1.82.94.6-2.22.00.2
Pavlov. Cond. index score2.63.65.8-1.42.41.7
Pavlov. Cond. latency score2.63.45.6-1.52.41.5
Pavlov. Cond. lever contacts2.83.86.4-2.02.51.1
Pavlov. Cond. magazine entry number3.23.96.20.7-2.3-2.5
Pavlov. Cond. intertrial magazine entries0.40.71.00.8-1.0-0.5
Pavlov. Cond. lever-magazine prob. diff.2.22.94.7-1.22.21.6
Pavlov. Cond. response bias3.34.57.6-2.02.81.3
Time in closed arm before self-admin0.50.71.1-0.81.00.6
Time in closed arm after self-admin0.60.71.3-0.7-0.4-1.1
Time in open arm before self-admin0.40.40.9-0.90.6-0.2
Time in open arm after self-admin1.31.52.81.7-0.21.3
Bone: periosteal estimation2.45.18.3-2.92.7-0.2
Bone: periosteal perimeter1.32.34.1-2.01.3-1.1
Bone: post-yield work0.10.20.3-0.50.60.1
Progressive ratio test 1 active lever presses2.02.44.7-2.20.3-1.6
Progressive ratio test 1 breakpoint1.92.34.9-2.20.5-1.4
Progressive ratio test 1 inactive lever presses1.01.43.1-1.80.8-0.6
Progressive ratio test 2 active lever presses2.52.96.0-2.50.5-1.5
Progressive ratio test 2 breakpoint2.42.75.8-2.40.5-1.5
Progressive ratio test 2 inactive lever presses1.83.05.9-2.40.3-1.7
Incentive Sensitization - Responses0.91.32.9-1.70.9-0.3
Incentive Sensitization - Breakpoint0.71.02.2-1.50.8-0.3
Sum of active levers in priming session hrs 5-60.10.10.10.20.20.4
Progressive ratio2.33.66.7-0.2-2.0-2.6
Food seeking constrained by brief footshock1.41.73.5-0.7-1.1-1.9
Seeking ratio, punishment vs. effort0.40.61.20.10.81.1
Retroperitoneal fat weight0.00.20.4-0.40.60.2
Reaction time number correct0.00.10.1-0.20.3-0.0
Reaction time mean minus median1.84.48.42.20.22.9
Reaction time mean minus median AUC1.02.44.11.8-0.12.0
Reaction time num false alarms2.02.84.20.5-2.0-2.0
Reaction time num false alarms AUC1.52.33.50.5-1.9-1.8
Reaction time trials correct on left0.00.10.1-0.20.3-0.0
Reaction time trials on left0.00.00.1-0.20.3-0.0
Reaction time mean2.43.87.22.7-1.01.8
Reaction time mean AUC1.93.15.42.3-0.71.8
Median of all reaction times2.43.46.82.6-1.41.2
Reaction time omissions1.31.83.21.8-1.50.1
Reaction time false alarm rate2.33.14.80.6-2.2-2.1
Reaction time premature initiation rate3.14.37.21.0-2.7-2.2
Reaction time premature initiations1.52.74.20.7-2.0-1.8
Std. dev. reaction times1.42.53.81.9-0.31.9
Reaction time trials completed0.00.00.1-0.20.3-0.0
Reaction time trials AUC0.00.10.1-0.30.3-0.1
Run reversals in cocaine runway, females0.10.10.20.4-0.20.2
Run reversals in cocaine runway, males1.21.21.8-1.31.30.4
Latency to leave start box in cocaine runway0.70.81.81.3-0.90.1
Latency to leave start box in cocaine runway, F0.30.40.91.0-0.40.2
Latency to leave start box in cocaine runway, M0.50.40.70.9-0.7-0.0
Std. dev. time between licks in bursts1.41.93.7-1.91.0-1.1
Total sessions with >9 infusions6.27.511.4-3.3-0.4-3.4
Short access day 1 total inactive lever presses1.52.03.8-1.0-1.1-1.9
Short access day 10 total inactive lever presses0.30.61.0-0.00.91.0
Short access day 1 total infusions6.38.314.9-3.90.2-3.2
Short access day 10 total infusions2.02.64.5-2.10.1-1.8
Short access total infusions3.64.67.4-2.7-0.2-2.6
Short access day 1 locomotion4.45.512.1-3.51.2-1.7
Short access day 10 total locomotion1.01.84.1-2.01.0-0.5
Short access total locomotion4.25.09.9-3.10.4-2.3
One hour access (0.3 mA shock)0.70.81.2-1.11.10.3
Compulsive drug intake0.70.81.50.30.91.2
One hour access (shock baseline)0.71.12.5-1.60.4-0.9
Social response proportion0.40.40.70.8-0.8-0.1
Social responses0.30.40.7-0.80.6-0.3
Social time2.43.35.12.3-2.20.1
Soleus weight0.82.43.7-0.71.91.8
Bone: stiffness1.32.24.2-2.01.4-0.6
Tibialis anterior weight4.515.127.5-3.45.22.5
Time to tail flick, vehicle, before self-admin0.20.20.40.6-0.30.3
Time to tail flick, vehicle, after self-admin1.21.62.80.7-1.7-1.2
Time to tail flick, test, before self-admin0.70.81.3-1.1-0.0-1.0
Time to tail flick, test, after self-admin0.50.50.80.9-0.9-0.1
Delta time to tail flick, vehicle, before/after SA0.70.61.2-0.3-0.8-1.1
Delta time to tail flick, test, before/after SA0.90.91.91.4-1.00.1
Tibia length1.74.67.2-2.62.70.4
Ambulatory time before self-admin0.50.71.20.90.11.1
Ambulatory time after self-admin3.54.18.61.31.52.9
Bone: tissue strength0.50.50.9-0.20.90.7
Total heroin consumption0.80.91.4-1.1-0.2-1.2
Bone: trabecular number1.11.82.60.3-1.6-1.6
Bone: trabecular spacing0.00.00.00.2-0.1-0.1
Bone: trabecular thickness0.20.20.5-0.70.4-0.3
Bone: trabecular tissue density0.71.02.20.50.81.5
Water consumed over 24 hours1.62.13.4-0.41.71.8
Number of responses in last shaping day6.57.115.7-4.01.5-1.9