Nlk

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Nlk 0.11 0.07 5.5e-13 0.1 0.1 0.09 0.1 1.8e-11 2.0e-11 1.5e-10 8.7e-11
2 IL isoform ratio XM_039086614.2 0.13 0.12 5.7e-03 0.05 0.06 0.04 0.06 3.0e-02 1.5e-02 3.2e-02 1.7e-02
3 NAcc gene expression Nlk 0.01 0.01 5.4e-03 0.02 0.01 0.01 0.01 4.8e-04 1.2e-02 1.3e-02 5.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.93.53.71.9-1.9-1.8
Area under the delay curve0.60.91.3-0.91.10.8
BMI with tail2.07.17.82.6-2.6-2.8
BMI without tail1.15.76.12.4-2.5-2.3
Body weight2.812.313.23.6-3.6-3.3
Weight adjusted by age0.00.10.30.2-0.2-0.5
Bone surface1.42.72.91.6-1.7-1.7
Bone volume1.32.52.61.6-1.6-1.6
Breakpoint value in progressive ratio session0.10.20.30.4-0.5-0.5
Number of licking bursts0.20.50.6-0.70.70.8
Context. condit. distance diff. score0.60.70.70.9-0.8-0.8
Locomotion velocity, session 12.02.22.51.6-1.6-1.3
Locomotion distance, session 10.20.20.30.6-0.6-0.3
Locomotion velocity, session 20.00.00.00.1-0.1-0.1
Locomotion distance, session 21.31.82.31.2-1.3-1.5
Locomotion velocity, session 33.43.94.3-2.12.01.8
Locomotion distance, session 30.30.40.4-0.60.60.6
Stereotopy head waving bouts, day 30.00.00.0-0.1-0.0-0.1
Stereotopy head waving duration, day 30.70.91.1-1.10.90.8
Locomotion velocity, session 70.10.10.20.3-0.4-0.3
Locomotion distance, session 70.30.40.40.6-0.7-0.6
Stereotopy head waving bouts, day 70.50.60.90.7-0.7-0.9
Stereotopy head waving duration, day 70.10.20.30.3-0.4-0.5
Locomotion velocity, session 80.00.10.10.2-0.2-0.3
Locomotion distance, session 80.91.31.51.1-1.1-1.2
Degree of sensitization distance2.72.93.11.7-1.8-1.7
Degree of sensitization stereotypy0.60.70.80.7-0.8-0.9
Conditioned locomotion1.82.12.5-1.61.51.3
Cocaine response after cond. corrected1.32.02.01.4-1.4-1.4
Cocaine response after cond. not corrected1.82.62.71.6-1.6-1.7
Cocaine response before conditioning0.20.20.20.5-0.5-0.4
Saline control response0.00.00.0-0.10.10.1
Bone: connectivity density3.45.45.82.3-2.4-2.3
Bone: cortical apparent density0.50.81.0-0.90.91.0
Bone: cortical area1.21.92.0-1.41.41.4
Bone: cortical porosity0.20.20.30.5-0.5-0.3
Bone: cortical porosity0.10.10.10.3-0.3-0.2
Bone: cortical thickness2.84.74.8-2.12.22.2
Bone: cortical thickness0.10.10.2-0.30.30.4
Bone: cortical tissue density0.30.50.6-0.70.70.8
Condit. Reinf. active minus inactive responses0.80.91.0-1.01.00.9
Condit. Reinf. active-inactive response ratio0.20.20.2-0.40.40.4
Condit. Reinf. active responses0.00.00.0-0.20.10.2
Condit. Reinf. inactive responses0.20.30.40.5-0.6-0.6
Incentive salience index mean0.20.30.4-0.60.60.4
Condit. Reinf. lever presses0.10.20.40.3-0.4-0.6
Condit. Reinf. active minus inactive responses0.60.91.1-1.00.90.9
Condit. Reinf. active-inactive response ratio0.50.81.0-1.00.90.8
Condit. Reinf. active responses0.40.60.7-0.90.70.7
Condit. Reinf. inactive responses0.00.00.0-0.0-0.00.0
Condit. Reinf. lever presses2.43.53.8-1.91.91.7
Condit. Reinf. lever reinforcers received0.70.91.1-1.10.90.9
Conditioned reinforcement - actives0.10.40.50.6-0.7-0.7
Conditioned reinforcement - inactives0.10.20.30.4-0.5-0.2
Conditioned locomotion0.71.01.60.8-0.8-1.3
Patch foraging indifference point 0 sec0.30.90.9-1.00.90.9
Patch foraging indifference point AUC1.23.03.3-1.81.81.6
Delay disc. indifference point, 0s delay0.40.40.7-0.50.80.5
Delay disc. indifference point, 16s delay0.30.40.6-0.50.80.4
Delay disc. indifference point, 2s delay2.22.42.7-1.61.71.4
Delay disc. indifference point, 24s delay0.50.80.80.9-0.9-0.9
Delay disc. indifference point, 4s delay0.10.10.3-0.10.30.6
Delay disc. indifference point, 8s delay0.20.40.6-0.70.80.3
Indifference point function ln k0.20.60.80.9-0.9-0.5
Indifference point function log k0.20.60.80.9-0.9-0.5
Patch foraging total patch changes 0 sec0.30.70.8-0.90.80.9
Patch foraging total patch changes 12 sec0.10.20.2-0.40.40.4
Patch foraging total patch changes 18 sec1.12.62.7-1.61.71.6
Patch foraging total patch changes 24 sec1.03.43.8-2.01.91.7
Patch foraging total patch changes 6 sec2.64.44.9-2.22.21.9
Patch foraging time to switch 0 sec0.82.93.01.7-1.7-1.7
Patch foraging water rate 0 sec0.93.33.4-1.81.81.8
Patch foraging water rate 12 sec0.00.10.20.4-0.4-0.2
Patch foraging water rate 18 sec0.30.80.90.9-0.8-0.8
Patch foraging water rate 24 sec0.10.20.3-0.30.40.5
Patch foraging water rate 6 sec1.31.92.3-1.21.31.5
Seeking ratio, delayed vs. immediate footshock1.31.82.1-1.41.41.3
Distance traveled before self-admin2.24.74.8-2.12.22.2
Distance traveled after self-admin0.00.10.1-0.20.30.2
Extensor digitorum longus weight0.93.64.31.8-1.8-2.1
Bone: elastic displacement2.73.53.5-1.91.91.8
Bone: elastic work9.111.913.0-3.43.43.6
Bone: endosteal estimation0.00.00.00.1-0.1-0.1
Bone: endosteal perimeter0.00.10.10.3-0.3-0.3
Epididymis fat weight5.829.431.05.6-5.4-5.3
Delta time in closed arm before/after self-admin3.53.33.4-1.81.81.8
Delta time in open arm before/after self-admin6.27.47.62.8-2.7-2.7
Diff in mean of infusions in LGA sessions0.40.80.90.9-0.9-0.9
Delay discount exponential model param0.50.60.90.7-0.9-0.7
Extinction: sum of active levers before priming0.61.01.01.0-1.0-1.0
Active lever presses in extinction session 60.00.00.10.1-0.3-0.2
Bone: final force0.20.40.5-0.60.60.7
Bone: final moment0.30.50.6-0.60.70.8
Food consumed during 24 hour testing period0.30.60.9-0.70.61.0
Glucose1.42.12.3-1.51.51.4
Heart weight1.21.92.21.3-1.5-1.3
Delay discount hyperbolic model param0.81.11.41.0-1.2-0.9
Intermittent access intake day 1-15 change0.00.00.00.1-0.10.0
Intermittent access intake escalation0.00.10.10.3-0.3-0.2
Intermittent access intake escalation 20.10.20.3-0.40.40.5
Intermitt. access day 1 inactive lever presses0.00.20.2-0.40.40.4
Intermitt. access day 15 inactive lever presses0.20.80.9-0.90.80.9
Intermitt. access escalation Index0.72.12.51.5-1.2-1.6
Intermittent access day 1 total infusions0.20.71.20.6-0.6-1.1
Intermittent access day 15 total infusions0.71.82.41.2-1.2-1.6
Intermittent access terminal intake (last 3 days)1.01.82.21.3-1.3-1.5
Intermittent access total infusions0.81.01.70.7-0.8-1.3
Intermittent access day 1 locomotion0.10.30.60.3-0.3-0.8
Intermittent access day 15 total locomotion0.20.81.20.7-0.8-1.1
Intermittent access total locomotion0.91.11.60.9-0.9-1.3
Intermittent access standard deviation0.00.00.10.2-0.1-0.3
Left kidney weight0.00.30.30.6-0.5-0.4
Right kidney weight0.10.80.80.9-0.9-0.9
Cocaine induced anxiety0.00.10.2-0.40.40.3
Post-drug Anxiety0.10.10.10.3-0.3-0.3
Baseline Anxiety0.10.10.20.3-0.4-0.2
Tail length0.31.41.81.4-1.3-0.8
Length with tail0.62.43.21.8-1.7-1.2
Length without tail0.31.62.01.4-1.2-1.1
Times rat made contact with spout0.20.20.4-0.40.30.6
Lifetime Intake1.01.31.81.0-1.0-1.4
Liver weight, left4.78.28.62.9-2.9-2.8
Liver weight, right3.96.87.12.6-2.7-2.6
Locomotor activity0.00.00.0-0.10.20.2
Locomotor testing distance0.00.10.1-0.30.30.2
Locomotor testing rearing0.10.20.2-0.40.40.5
Locomotion in novel chamber2.02.72.9-1.71.71.5
Locomotion in novel chamber post-restriction0.00.00.0-0.0-0.00.2
Fecal boli incidents, locomotor time 10.71.82.01.2-1.4-1.4
Change in fecal boli incidents, locomotor task0.00.00.10.00.20.2
Time >=10cm from walls, locomotor time 10.00.10.10.1-0.2-0.3
Bouts of movement, locomotor time 10.30.40.5-0.60.70.6
Total resting periods, locomotor time 10.10.10.1-0.40.40.3
Rest time, locomotor task time 10.00.00.10.2-0.30.0
Distance moved, locomotor task time 10.10.20.2-0.40.50.4
Vertical activity count, locomotor time 10.00.00.00.00.1-0.2
Time >=10cm from walls, locomotor time 20.51.51.61.2-1.2-1.3
Bouts of movement, locomotor time 20.20.71.3-0.70.71.1
Total resting periods, locomotor time 20.10.40.8-0.40.40.9
Rest time, locomotor task time 20.20.30.4-0.60.40.5
Distance moved, locomotor task time 20.00.00.1-0.00.3-0.0
Vertical activity count, locomotor time 20.00.00.00.20.2-0.1
Light reinforcement 10.00.00.00.00.1-0.2
Light reinforcement 20.20.50.5-0.70.70.7
Bone: marrow area0.00.00.00.1-0.1-0.0
Bone: maximum diameter0.20.40.5-0.60.70.6
Bone: maximum force0.40.70.8-0.80.90.9
Bone: maximum moment0.40.91.0-0.80.91.0
Mean time between licks in bursts0.21.01.11.0-1.0-0.9
Mean num. licks in bursts0.10.30.40.6-0.6-0.5
Cd content in liver0.50.50.6-0.80.80.6
Co content in liver0.30.30.4-0.70.70.3
Cu content in liver1.92.32.4-1.61.51.5
Fe content in liver2.22.72.81.6-1.7-1.6
K content in liver0.20.20.30.5-0.4-0.4
Mg content in liver0.70.80.9-0.90.81.0
Mn content in liver0.30.30.3-0.60.60.5
Na content in liver0.30.30.50.7-0.4-0.6
Rb content in liver0.10.10.20.5-0.3-0.4
Se content in liver0.80.91.0-1.00.91.0
Sr content in liver0.30.30.30.6-0.6-0.5
Zn content in liver0.30.30.50.6-0.7-0.4
Bone: minimum diameter0.00.10.1-0.30.30.2
Time in familiar zone, hab. session 10.20.20.3-0.40.50.4
Time in novel zone, hab. session 10.10.10.10.3-0.3-0.2
Total zone transitions, hab. session 10.00.00.0-0.00.1-0.0
Total locomotion distance, hab. session 10.10.10.2-0.30.40.4
Locomotion velocity, hab. session 10.30.40.4-0.60.70.7
Time in familiar zone, hab. session 20.20.30.3-0.50.50.5
Time in novel zone, hab. session 20.00.10.1-0.20.20.3
Total zone transitions, hab. session 20.40.50.80.6-0.6-0.9
Total locomotion distance, hab. session 20.10.10.2-0.40.30.2
Locomotion velocity, hab. session 20.10.10.2-0.40.40.2
Novel to familiar place preference ratio0.71.01.01.0-1.0-1.0
Novelty place preference1.01.31.31.1-1.1-1.1
Time in novel zone, NPP test1.11.31.41.2-1.2-1.1
Total zone transitions, NPP test0.00.00.10.1-0.1-0.3
Total locomotion distance, NPP test0.91.21.4-1.21.11.0
Locomotion velocity, NPP test1.01.41.6-1.31.21.1
Intraocular pressure1.01.71.8-1.31.31.2
Delta distance traveled before/after self-admin3.23.53.61.9-1.8-1.9
Delta ambulatory time before/after self-admin1.83.03.21.8-1.7-1.8
Parametrial fat weight6.114.414.53.8-3.8-3.8
Pavlov. Cond. lever latency0.00.00.00.1-0.10.1
Pavlov. Cond. magazine entry latency0.00.10.10.2-0.2-0.3
Pavlov. Cond. change in total contacts0.20.30.4-0.60.60.3
Pavlov. Cond. index score0.00.00.0-0.10.1-0.2
Pavlov. Cond. latency score0.00.00.10.0-0.0-0.2
Pavlov. Cond. lever contacts0.00.00.10.1-0.0-0.4
Pavlov. Cond. magazine entry number0.10.10.10.4-0.4-0.2
Pavlov. Cond. intertrial magazine entries0.30.40.4-0.60.60.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.20.2-0.1
Pavlov. Cond. response bias0.00.00.00.0-0.0-0.2
Pavlov. Cond. lever latency2.53.53.71.9-1.9-1.8
Pavlov. Cond. magazine entry latency0.20.30.3-0.50.50.6
Pavlov. Cond. change in total contacts0.92.22.2-1.51.51.5
Pavlov. Cond. index score2.03.23.2-1.81.81.8
Pavlov. Cond. latency score2.33.73.8-1.91.91.9
Pavlov. Cond. lever contacts1.42.12.2-1.51.51.4
Pavlov. Cond. magazine entry number0.00.00.00.1-0.1-0.2
Pavlov. Cond. intertrial magazine entries0.30.60.60.7-0.8-0.8
Pavlov. Cond. lever-magazine prob. diff.1.52.42.4-1.61.61.5
Pavlov. Cond. response bias1.21.71.7-1.31.31.3
Time in closed arm before self-admin1.42.42.61.6-1.5-1.6
Time in closed arm after self-admin0.40.40.5-0.60.70.7
Time in open arm before self-admin2.53.03.2-1.81.71.8
Time in open arm after self-admin0.91.01.01.0-1.0-1.0
Bone: periosteal estimation0.20.60.6-0.70.80.8
Bone: periosteal perimeter0.10.20.3-0.40.50.5
Bone: post-yield work0.30.60.70.7-0.7-0.9
Progressive ratio test 1 active lever presses0.10.20.4-0.50.60.3
Progressive ratio test 1 breakpoint0.20.30.4-0.60.70.3
Progressive ratio test 1 inactive lever presses0.51.31.5-1.21.21.0
Progressive ratio test 2 active lever presses0.20.30.4-0.60.60.3
Progressive ratio test 2 breakpoint0.20.30.4-0.60.60.3
Progressive ratio test 2 inactive lever presses0.00.10.1-0.40.30.3
Incentive Sensitization - Responses0.00.00.0-0.2-0.0-0.1
Incentive Sensitization - Breakpoint0.00.00.0-0.1-0.1-0.2
Sum of active levers in priming session hrs 5-61.51.41.51.2-1.2-1.2
Progressive ratio0.00.00.1-0.0-0.00.2
Food seeking constrained by brief footshock0.10.10.10.3-0.3-0.2
Seeking ratio, punishment vs. effort0.00.00.0-0.00.1-0.1
Retroperitoneal fat weight0.62.73.11.8-1.6-1.6
Reaction time number correct0.41.41.61.3-1.2-1.1
Reaction time mean minus median0.00.20.30.4-0.5-0.4
Reaction time mean minus median AUC0.42.42.51.5-1.6-1.5
Reaction time num false alarms4.88.28.4-2.92.92.8
Reaction time num false alarms AUC3.68.38.6-2.92.92.8
Reaction time trials correct on left0.41.41.61.3-1.2-1.1
Reaction time trials on left0.41.41.61.3-1.2-1.1
Reaction time mean0.30.71.00.9-1.0-0.7
Reaction time mean AUC0.20.60.80.8-0.9-0.6
Median of all reaction times0.30.50.60.7-0.8-0.5
Reaction time omissions1.22.02.11.4-1.4-1.4
Reaction time false alarm rate6.28.68.8-3.03.02.9
Reaction time premature initiation rate0.20.40.40.6-0.6-0.6
Reaction time premature initiations0.30.80.90.9-0.9-0.8
Std. dev. reaction times0.31.11.21.1-1.1-1.0
Reaction time trials completed0.41.41.61.3-1.2-1.1
Reaction time trials AUC0.31.11.31.1-1.1-1.0
Run reversals in cocaine runway, females0.10.10.10.3-0.3-0.3
Run reversals in cocaine runway, males0.10.10.20.4-0.3-0.3
Latency to leave start box in cocaine runway0.91.31.5-1.20.91.2
Latency to leave start box in cocaine runway, F0.20.20.3-0.60.40.4
Latency to leave start box in cocaine runway, M0.70.70.9-0.90.61.0
Std. dev. time between licks in bursts0.00.00.00.2-0.2-0.1
Total sessions with >9 infusions0.81.01.21.0-0.9-1.1
Short access day 1 total inactive lever presses2.85.55.72.3-2.3-2.4
Short access day 10 total inactive lever presses0.00.00.10.00.00.2
Short access day 1 total infusions0.71.41.51.2-1.1-1.2
Short access day 10 total infusions0.50.80.90.9-0.8-0.9
Short access total infusions0.40.60.70.8-0.7-0.9
Short access day 1 locomotion0.00.10.20.2-0.1-0.4
Short access day 10 total locomotion0.10.50.6-0.70.80.6
Short access total locomotion0.10.20.3-0.50.50.1
One hour access (0.3 mA shock)0.00.00.0-0.20.2-0.2
Compulsive drug intake0.91.31.41.1-1.1-1.2
One hour access (shock baseline)0.00.10.2-0.40.40.1
Social response proportion2.63.23.51.9-1.8-1.7
Social responses2.02.62.81.7-1.6-1.5
Social time1.82.83.31.6-1.6-1.8
Soleus weight2.47.07.52.5-2.6-2.7
Bone: stiffness1.83.33.61.9-1.8-1.8
Tibialis anterior weight2.89.710.23.0-3.1-3.2
Time to tail flick, vehicle, before self-admin0.20.20.30.5-0.4-0.5
Time to tail flick, vehicle, after self-admin0.10.30.4-0.50.60.5
Time to tail flick, test, before self-admin0.00.00.0-0.1-0.00.1
Time to tail flick, test, after self-admin1.31.41.6-1.20.91.3
Delta time to tail flick, vehicle, before/after SA0.70.70.8-0.90.80.9
Delta time to tail flick, test, before/after SA0.50.70.7-0.80.80.8
Tibia length0.00.00.0-0.10.20.2
Ambulatory time before self-admin0.51.61.8-1.21.41.2
Ambulatory time after self-admin0.00.00.00.2-0.1-0.2
Bone: tissue strength1.51.61.7-1.21.31.3
Total heroin consumption2.12.52.91.5-1.7-1.5
Bone: trabecular number2.34.34.82.1-2.2-2.0
Bone: trabecular spacing0.20.20.3-0.50.60.4
Bone: trabecular thickness0.00.00.0-0.00.00.1
Bone: trabecular tissue density1.11.91.9-1.41.41.4
Water consumed over 24 hours0.00.10.2-0.20.20.4
Number of responses in last shaping day0.91.11.3-1.01.01.1