Myo7a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Myo7a 0.16 0.09 6.0e-06 0.05 0.04 0.04 0.04 7.3e-06 1.1e-05 5.2e-05 1.5e-05
2 Eye alternative polyA NM_153473.2 0.46 0.16 1.2e-03 0.11 0.06 0.06 0.11 8.9e-03 4.1e-02 4.7e-02 9.9e-03
3 Eye alternative polyA XM_006229744.4 0.48 0.18 2.2e-03 0.11 0.06 0.08 0.09 8.9e-03 3.9e-02 2.6e-02 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.1-0.2-0.20.2
Area under the delay curve1.11.21.70.4-1.31.3
BMI with tail1.75.46.7-1.72.6-2.6
BMI without tail8.217.022.4-2.54.7-4.7
Body weight2.811.915.4-2.23.9-3.9
Weight adjusted by age0.30.40.6-0.80.5-0.5
Bone surface0.61.01.20.8-1.11.1
Bone volume0.10.20.40.2-0.60.6
Breakpoint value in progressive ratio session0.00.00.0-0.1-0.10.1
Number of licking bursts3.23.86.1-2.51.6-1.6
Context. condit. distance diff. score2.02.42.81.2-1.71.7
Locomotion velocity, session 11.21.31.60.9-1.31.3
Locomotion distance, session 10.60.71.41.2-0.60.6
Locomotion velocity, session 20.70.91.00.7-1.01.0
Locomotion distance, session 20.10.20.60.80.0-0.0
Locomotion velocity, session 30.30.30.40.6-0.50.5
Locomotion distance, session 32.02.22.61.2-1.61.6
Stereotopy head waving bouts, day 31.41.72.3-0.51.5-1.5
Stereotopy head waving duration, day 30.20.20.70.8-0.00.0
Locomotion velocity, session 70.30.30.3-0.5-0.60.6
Locomotion distance, session 70.20.20.4-0.6-0.40.4
Stereotopy head waving bouts, day 71.21.32.91.7-0.70.7
Stereotopy head waving duration, day 71.31.63.31.8-0.80.8
Locomotion velocity, session 85.36.38.21.6-2.92.9
Locomotion distance, session 81.31.92.41.5-1.31.3
Degree of sensitization distance2.12.12.2-1.41.5-1.5
Degree of sensitization stereotypy4.24.66.52.6-1.91.9
Conditioned locomotion0.30.30.40.4-0.70.7
Cocaine response after cond. corrected0.50.61.8-1.3-0.10.1
Cocaine response after cond. not corrected0.10.20.2-0.5-0.40.4
Cocaine response before conditioning0.81.02.71.7-0.30.3
Saline control response0.40.51.21.10.4-0.4
Bone: connectivity density0.60.91.20.7-1.11.1
Bone: cortical apparent density0.70.91.1-1.00.9-0.9
Bone: cortical area0.30.50.6-0.60.8-0.8
Bone: cortical porosity1.11.22.31.5-0.80.8
Bone: cortical porosity1.01.02.21.5-0.70.7
Bone: cortical thickness0.61.01.2-1.10.9-0.9
Bone: cortical thickness0.30.40.50.0-0.70.7
Bone: cortical tissue density0.60.70.9-1.00.8-0.8
Condit. Reinf. active minus inactive responses1.82.02.6-1.01.6-1.6
Condit. Reinf. active-inactive response ratio1.41.52.1-0.61.5-1.5
Condit. Reinf. active responses1.41.82.1-1.01.5-1.5
Condit. Reinf. inactive responses0.00.10.1-0.40.1-0.1
Incentive salience index mean0.60.80.8-0.80.9-0.9
Condit. Reinf. lever presses0.20.20.3-0.0-0.60.6
Condit. Reinf. active minus inactive responses0.60.81.91.4-0.40.4
Condit. Reinf. active-inactive response ratio0.20.20.20.3-0.50.5
Condit. Reinf. active responses0.81.13.01.7-0.40.4
Condit. Reinf. inactive responses0.60.82.31.50.1-0.1
Condit. Reinf. lever presses8.411.418.44.3-2.82.8
Condit. Reinf. lever reinforcers received1.21.63.92.0-0.70.7
Conditioned reinforcement - actives3.83.83.81.9-2.02.0
Conditioned reinforcement - inactives0.10.10.1-0.0-0.40.4
Conditioned locomotion3.13.73.71.9-1.91.9
Patch foraging indifference point 0 sec1.62.56.32.5-0.80.8
Patch foraging indifference point AUC0.10.10.2-0.30.4-0.4
Delay disc. indifference point, 0s delay0.10.10.30.6-0.20.2
Delay disc. indifference point, 16s delay1.61.62.30.6-1.51.5
Delay disc. indifference point, 2s delay0.80.91.51.2-0.80.8
Delay disc. indifference point, 24s delay0.30.30.5-0.7-0.40.4
Delay disc. indifference point, 4s delay0.50.50.70.4-0.80.8
Delay disc. indifference point, 8s delay1.71.82.40.7-1.61.6
Indifference point function ln k1.92.73.41.8-1.51.5
Indifference point function log k1.92.73.41.8-1.51.5
Patch foraging total patch changes 0 sec1.42.25.42.3-0.80.8
Patch foraging total patch changes 12 sec0.10.10.10.30.3-0.3
Patch foraging total patch changes 18 sec0.20.20.50.7-0.30.3
Patch foraging total patch changes 24 sec0.10.10.10.30.3-0.3
Patch foraging total patch changes 6 sec0.30.51.41.2-0.00.0
Patch foraging time to switch 0 sec1.21.94.2-2.10.9-0.9
Patch foraging water rate 0 sec1.62.64.42.1-1.31.3
Patch foraging water rate 12 sec1.82.84.32.1-1.41.4
Patch foraging water rate 18 sec0.40.50.70.8-0.70.7
Patch foraging water rate 24 sec2.12.93.11.6-1.81.8
Patch foraging water rate 6 sec1.62.42.71.3-1.61.6
Seeking ratio, delayed vs. immediate footshock0.60.61.8-1.3-0.20.2
Distance traveled before self-admin0.30.30.3-0.50.6-0.6
Distance traveled after self-admin0.10.10.1-0.20.4-0.4
Extensor digitorum longus weight0.31.23.0-1.70.6-0.6
Bone: elastic displacement0.40.41.2-1.1-0.10.1
Bone: elastic work0.70.91.1-0.7-1.01.0
Bone: endosteal estimation0.00.00.00.10.1-0.1
Bone: endosteal perimeter0.30.61.21.1-0.50.5
Epididymis fat weight4.310.011.1-2.83.3-3.3
Delta time in closed arm before/after self-admin0.80.82.0-1.40.4-0.4
Delta time in open arm before/after self-admin0.50.41.21.1-0.20.2
Diff in mean of infusions in LGA sessions2.93.24.0-2.01.7-1.7
Delay discount exponential model param1.01.11.5-0.51.2-1.2
Extinction: sum of active levers before priming0.10.10.2-0.50.2-0.2
Active lever presses in extinction session 62.82.76.72.6-0.90.9
Bone: final force0.00.10.1-0.0-0.30.3
Bone: final moment0.00.10.10.1-0.30.3
Food consumed during 24 hour testing period4.75.77.52.7-2.22.2
Glucose0.20.30.40.4-0.60.6
Heart weight0.70.91.21.1-0.90.9
Delay discount hyperbolic model param1.01.11.4-0.61.2-1.2
Intermittent access intake day 1-15 change4.54.54.91.9-2.22.2
Intermittent access intake escalation5.04.95.22.1-2.32.3
Intermittent access intake escalation 20.80.80.80.9-0.90.9
Intermitt. access day 1 inactive lever presses0.20.20.5-0.70.2-0.2
Intermitt. access day 15 inactive lever presses0.30.30.40.2-0.60.6
Intermitt. access escalation Index0.00.00.00.10.0-0.0
Intermittent access day 1 total infusions0.30.40.40.5-0.70.7
Intermittent access day 15 total infusions5.15.76.62.0-2.62.6
Intermittent access terminal intake (last 3 days)2.52.83.31.3-1.81.8
Intermittent access total infusions1.21.31.70.8-1.31.3
Intermittent access day 1 locomotion0.30.30.50.3-0.70.7
Intermittent access day 15 total locomotion1.71.82.11.5-1.31.3
Intermittent access total locomotion0.40.50.60.6-0.80.8
Intermittent access standard deviation0.10.10.10.1-0.40.4
Left kidney weight0.20.60.9-0.20.9-0.9
Right kidney weight0.30.81.2-0.11.1-1.1
Cocaine induced anxiety1.11.32.1-1.50.9-0.9
Post-drug Anxiety0.10.10.3-0.5-0.00.0
Baseline Anxiety2.72.92.91.7-1.71.7
Tail length2.47.110.2-1.03.2-3.2
Length with tail1.76.18.4-1.22.9-2.9
Length without tail0.00.00.1-0.1-0.20.2
Times rat made contact with spout0.91.01.3-0.71.1-1.1
Lifetime Intake1.61.82.21.0-1.51.5
Liver weight, left1.32.12.6-1.11.6-1.6
Liver weight, right6.210.312.0-2.63.5-3.5
Locomotor activity0.40.61.11.10.6-0.6
Locomotor testing distance0.30.40.80.90.5-0.5
Locomotor testing rearing1.62.53.7-0.41.9-1.9
Locomotion in novel chamber1.72.12.41.5-1.41.4
Locomotion in novel chamber post-restriction4.85.88.73.0-2.12.1
Fecal boli incidents, locomotor time 12.52.83.51.2-1.91.9
Change in fecal boli incidents, locomotor task0.50.50.6-0.50.8-0.8
Time >=10cm from walls, locomotor time 12.02.13.21.8-1.21.2
Bouts of movement, locomotor time 10.10.10.20.4-0.20.2
Total resting periods, locomotor time 10.30.30.40.5-0.60.6
Rest time, locomotor task time 10.60.70.90.6-0.90.9
Distance moved, locomotor task time 10.40.40.6-0.80.6-0.6
Vertical activity count, locomotor time 10.10.10.1-0.40.4-0.4
Time >=10cm from walls, locomotor time 20.30.30.80.9-0.30.3
Bouts of movement, locomotor time 20.20.30.40.7-0.40.4
Total resting periods, locomotor time 20.20.20.30.6-0.50.5
Rest time, locomotor task time 20.50.61.1-1.10.5-0.5
Distance moved, locomotor task time 20.20.30.60.8-0.40.4
Vertical activity count, locomotor time 20.00.00.0-0.00.1-0.1
Light reinforcement 13.25.87.0-1.92.6-2.6
Light reinforcement 20.50.71.00.31.0-1.0
Bone: marrow area0.00.00.00.00.2-0.2
Bone: maximum diameter0.10.20.50.7-0.10.1
Bone: maximum force0.20.40.50.3-0.70.7
Bone: maximum moment0.20.40.50.4-0.70.7
Mean time between licks in bursts0.40.61.31.1-0.50.5
Mean num. licks in bursts2.12.54.42.1-1.31.3
Cd content in liver1.61.72.7-1.61.1-1.1
Co content in liver0.00.00.0-0.1-0.10.1
Cu content in liver0.10.10.10.30.3-0.3
Fe content in liver0.20.20.3-0.2-0.60.6
K content in liver0.10.10.1-0.30.3-0.3
Mg content in liver0.10.10.20.4-0.30.3
Mn content in liver0.00.00.1-0.2-0.20.2
Na content in liver1.21.32.21.5-0.90.9
Rb content in liver0.10.10.20.5-0.10.1
Se content in liver0.60.71.9-1.40.3-0.3
Sr content in liver0.70.60.90.3-1.01.0
Zn content in liver1.11.22.91.7-0.60.6
Bone: minimum diameter1.12.02.3-1.21.5-1.5
Time in familiar zone, hab. session 10.00.00.1-0.3-0.10.1
Time in novel zone, hab. session 10.60.60.6-0.70.8-0.8
Total zone transitions, hab. session 10.20.30.90.90.0-0.0
Total locomotion distance, hab. session 16.69.412.0-2.13.5-3.5
Locomotion velocity, hab. session 15.57.810.3-1.73.2-3.2
Time in familiar zone, hab. session 20.30.30.30.4-0.60.6
Time in novel zone, hab. session 20.00.00.0-0.10.1-0.1
Total zone transitions, hab. session 20.60.82.31.50.1-0.1
Total locomotion distance, hab. session 25.26.99.3-1.53.0-3.0
Locomotion velocity, hab. session 25.98.010.7-1.63.3-3.3
Novel to familiar place preference ratio0.10.10.20.40.3-0.3
Novelty place preference0.00.00.10.30.1-0.1
Time in novel zone, NPP test0.10.10.20.5-0.10.1
Total zone transitions, NPP test0.40.50.70.9-0.60.6
Total locomotion distance, NPP test4.15.76.4-2.02.5-2.5
Locomotion velocity, NPP test5.07.18.2-2.22.9-2.9
Intraocular pressure3.24.46.11.1-2.52.5
Delta distance traveled before/after self-admin0.20.30.40.7-0.40.4
Delta ambulatory time before/after self-admin0.60.70.90.9-0.70.7
Parametrial fat weight3.16.08.0-1.42.8-2.8
Pavlov. Cond. lever latency1.01.21.4-0.91.2-1.2
Pavlov. Cond. magazine entry latency0.30.30.80.9-0.40.4
Pavlov. Cond. change in total contacts0.70.81.00.6-1.01.0
Pavlov. Cond. index score0.70.80.90.9-0.90.9
Pavlov. Cond. latency score0.60.70.80.9-0.80.8
Pavlov. Cond. lever contacts0.60.71.00.4-1.01.0
Pavlov. Cond. magazine entry number0.80.91.2-1.10.9-0.9
Pavlov. Cond. intertrial magazine entries0.70.91.2-1.10.8-0.8
Pavlov. Cond. lever-magazine prob. diff.0.70.91.00.8-1.01.0
Pavlov. Cond. response bias0.20.30.40.3-0.60.6
Pavlov. Cond. lever latency10.013.518.9-4.33.3-3.3
Pavlov. Cond. magazine entry latency4.45.15.32.3-2.22.2
Pavlov. Cond. change in total contacts5.88.012.63.5-2.42.4
Pavlov. Cond. index score8.510.913.83.7-3.13.1
Pavlov. Cond. latency score8.410.413.23.6-3.03.0
Pavlov. Cond. lever contacts9.613.119.94.5-3.13.1
Pavlov. Cond. magazine entry number7.49.010.2-2.63.2-3.2
Pavlov. Cond. intertrial magazine entries2.83.65.0-0.92.2-2.2
Pavlov. Cond. lever-magazine prob. diff.7.79.812.43.5-2.92.9
Pavlov. Cond. response bias10.414.119.34.4-3.43.4
Time in closed arm before self-admin2.52.93.21.8-1.61.6
Time in closed arm after self-admin1.81.82.70.4-1.61.6
Time in open arm before self-admin2.22.43.3-1.81.4-1.4
Time in open arm after self-admin1.31.52.0-0.61.4-1.4
Bone: periosteal estimation0.00.00.0-0.10.2-0.2
Bone: periosteal perimeter0.10.20.50.70.0-0.0
Bone: post-yield work0.20.30.80.9-0.10.1
Progressive ratio test 1 active lever presses0.00.00.0-0.1-0.20.2
Progressive ratio test 1 breakpoint0.00.00.0-0.2-0.00.0
Progressive ratio test 1 inactive lever presses0.20.20.30.1-0.60.6
Progressive ratio test 2 active lever presses0.60.70.70.8-0.90.9
Progressive ratio test 2 breakpoint0.40.40.40.6-0.60.6
Progressive ratio test 2 inactive lever presses0.80.91.20.5-1.11.1
Incentive Sensitization - Responses0.80.81.01.0-0.90.9
Incentive Sensitization - Breakpoint0.90.91.11.1-0.90.9
Sum of active levers in priming session hrs 5-60.40.40.6-0.00.8-0.8
Progressive ratio0.60.71.00.5-1.01.0
Food seeking constrained by brief footshock0.50.61.01.00.7-0.7
Seeking ratio, punishment vs. effort1.11.32.00.21.4-1.4
Retroperitoneal fat weight10.133.334.9-5.55.9-5.9
Reaction time number correct0.30.41.21.10.1-0.1
Reaction time mean minus median0.20.30.40.70.5-0.5
Reaction time mean minus median AUC0.40.51.31.20.3-0.3
Reaction time num false alarms2.43.25.5-2.31.5-1.5
Reaction time num false alarms AUC0.81.12.6-1.60.6-0.6
Reaction time trials correct on left0.30.41.21.10.1-0.1
Reaction time trials on left0.30.41.31.10.0-0.0
Reaction time mean0.50.80.9-0.71.0-1.0
Reaction time mean AUC0.40.60.6-0.70.7-0.7
Median of all reaction times0.30.50.7-0.80.6-0.6
Reaction time omissions0.10.10.3-0.5-0.00.0
Reaction time false alarm rate1.21.74.5-2.10.6-0.6
Reaction time premature initiation rate0.91.31.7-0.61.3-1.3
Reaction time premature initiations0.40.60.90.20.9-0.9
Std. dev. reaction times0.50.71.0-0.31.0-1.0
Reaction time trials completed0.30.41.31.10.0-0.0
Reaction time trials AUC0.30.41.11.10.2-0.2
Run reversals in cocaine runway, females3.53.44.5-2.11.7-1.7
Run reversals in cocaine runway, males2.12.02.90.5-1.71.7
Latency to leave start box in cocaine runway0.91.01.4-1.20.9-0.9
Latency to leave start box in cocaine runway, F1.31.42.0-1.41.1-1.1
Latency to leave start box in cocaine runway, M0.00.00.10.2-0.10.1
Std. dev. time between licks in bursts1.01.21.7-0.01.3-1.3
Total sessions with >9 infusions2.12.32.81.7-1.41.4
Short access day 1 total inactive lever presses0.40.50.70.1-0.80.8
Short access day 10 total inactive lever presses0.40.40.6-0.20.8-0.8
Short access day 1 total infusions1.41.42.31.5-1.01.0
Short access day 10 total infusions0.30.30.40.4-0.60.6
Short access total infusions0.40.50.60.6-0.80.8
Short access day 1 locomotion4.34.65.12.2-2.12.1
Short access day 10 total locomotion0.00.00.00.2-0.20.2
Short access total locomotion0.10.10.30.5-0.20.2
One hour access (0.3 mA shock)1.21.31.51.0-1.21.2
Compulsive drug intake0.00.00.00.10.0-0.0
One hour access (shock baseline)1.21.41.41.1-1.21.2
Social response proportion1.41.52.0-0.81.4-1.4
Social responses2.63.33.6-1.71.9-1.9
Social time1.52.02.0-1.41.4-1.4
Soleus weight1.13.33.3-1.81.8-1.8
Bone: stiffness0.00.00.1-0.20.2-0.2
Tibialis anterior weight0.20.60.8-0.40.9-0.9
Time to tail flick, vehicle, before self-admin0.60.61.2-1.10.6-0.6
Time to tail flick, vehicle, after self-admin2.52.72.81.6-1.71.7
Time to tail flick, test, before self-admin0.20.20.3-0.20.6-0.6
Time to tail flick, test, after self-admin0.00.00.0-0.10.2-0.2
Delta time to tail flick, vehicle, before/after SA5.55.55.92.4-2.32.3
Delta time to tail flick, test, before/after SA0.00.00.00.1-0.10.1
Tibia length0.92.54.22.0-1.31.3
Ambulatory time before self-admin0.00.00.1-0.3-0.00.0
Ambulatory time after self-admin0.00.10.10.2-0.20.2
Bone: tissue strength0.10.10.20.5-0.30.3
Total heroin consumption0.00.00.10.3-0.10.1
Bone: trabecular number0.20.30.8-0.9-0.20.2
Bone: trabecular spacing0.81.02.51.6-0.60.6
Bone: trabecular thickness0.50.71.3-1.10.6-0.6
Bone: trabecular tissue density3.04.25.3-1.42.3-2.3
Water consumed over 24 hours0.20.30.6-0.80.3-0.3
Number of responses in last shaping day1.01.01.1-0.91.1-1.1