Mvb12a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression Mvb12a 0.3 0.16 3.0e-03 0.07 0.04 0.08 0.07 7.5e-03 3.5e-02 7.3e-03 7.7e-03
2 LHb alternative TSS XM_063275152.1 0.28 0.16 7.8e-03 0.02 0.08 0.02 0.02 1.2e-01 6.5e-03 9.0e-02 9.0e-02
3 BLA mRNA stability Mvb12a 0.08 0.06 9.8e-04 0.05 0.05 0.05 0.04 7.9e-04 1.5e-03 1.9e-03 3.6e-03
4 NAcc mRNA stability Mvb12a 0.05 0.04 1.8e-05 0.03 0.03 0.03 0.02 8.1e-05 1.8e-05 5.2e-05 3.0e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.22.15.1-2.31.70.3-0.4
Area under the delay curve0.80.91.61.2-0.7-1.10.7
BMI with tail1.34.68.9-3.03.00.70.2
BMI without tail1.54.711.3-2.43.4-0.41.3
Body weight3.716.235.4-5.35.90.60.9
Weight adjusted by age1.01.63.9-1.42.00.00.7
Bone surface1.12.04.5-2.11.30.9-1.0
Bone volume1.32.35.3-2.31.90.5-0.4
Breakpoint value in progressive ratio session0.70.81.2-1.00.41.0-1.1
Number of licking bursts0.10.10.30.5-0.4-0.20.1
Context. condit. distance diff. score0.10.10.1-0.30.3-0.30.1
Locomotion velocity, session 13.94.26.4-2.10.62.5-2.3
Locomotion distance, session 13.13.96.7-1.4-0.62.5-2.6
Locomotion velocity, session 21.21.53.0-1.61.70.30.0
Locomotion distance, session 22.63.76.5-1.2-0.92.4-2.5
Locomotion velocity, session 30.10.10.4-0.3-0.20.3-0.6
Locomotion distance, session 30.80.81.5-0.8-0.31.1-1.2
Stereotopy head waving bouts, day 30.10.20.4-0.5-0.20.3-0.6
Stereotopy head waving duration, day 30.00.00.1-0.30.2-0.1-0.2
Locomotion velocity, session 70.70.81.60.9-1.30.7-0.6
Locomotion distance, session 71.11.43.31.5-1.80.1-0.4
Stereotopy head waving bouts, day 71.61.84.1-2.01.30.9-0.9
Stereotopy head waving duration, day 71.41.73.8-2.01.70.4-0.3
Locomotion velocity, session 81.82.23.9-1.2-0.22.0-1.8
Locomotion distance, session 81.72.53.9-1.5-0.12.0-1.9
Degree of sensitization distance1.31.33.01.7-1.2-0.80.6
Degree of sensitization stereotypy1.92.14.5-2.11.51.1-0.8
Conditioned locomotion0.10.10.20.5-0.3-0.20.1
Cocaine response after cond. corrected3.03.65.22.2-0.7-2.31.9
Cocaine response after cond. not corrected1.92.23.81.9-1.0-1.61.2
Cocaine response before conditioning1.61.93.3-0.8-0.51.8-1.8
Saline control response1.11.52.5-1.60.41.3-1.3
Bone: connectivity density0.71.12.5-1.61.10.5-0.6
Bone: cortical apparent density0.00.00.10.1-0.30.0-0.2
Bone: cortical area4.36.615.0-3.23.90.10.9
Bone: cortical porosity1.31.53.2-0.90.11.8-1.3
Bone: cortical porosity1.51.63.4-1.00.21.8-1.4
Bone: cortical thickness4.16.713.3-3.63.60.70.2
Bone: cortical thickness2.02.44.8-2.12.20.20.3
Bone: cortical tissue density0.10.10.20.3-0.50.0-0.3
Condit. Reinf. active minus inactive responses1.41.63.2-1.81.31.1-0.7
Condit. Reinf. active-inactive response ratio0.20.30.5-0.70.70.00.1
Condit. Reinf. active responses1.82.34.4-2.11.51.3-0.8
Condit. Reinf. inactive responses0.30.40.6-0.80.80.6-0.2
Incentive salience index mean4.04.99.6-3.12.02.0-1.5
Condit. Reinf. lever presses6.38.917.2-4.12.42.8-2.2
Condit. Reinf. active minus inactive responses0.50.60.9-0.8-0.00.9-1.0
Condit. Reinf. active-inactive response ratio0.30.40.7-0.80.80.20.0
Condit. Reinf. active responses0.60.91.6-0.1-0.91.1-1.2
Condit. Reinf. inactive responses1.31.74.21.4-2.00.4-0.8
Condit. Reinf. lever presses0.00.00.1-0.10.2-0.30.2
Condit. Reinf. lever reinforcers received0.10.20.30.1-0.60.4-0.5
Conditioned reinforcement - actives0.50.91.7-0.11.1-0.81.3
Conditioned reinforcement - inactives3.14.58.5-0.82.9-1.52.6
Conditioned locomotion1.41.83.60.50.9-1.61.9
Patch foraging indifference point 0 sec1.22.35.7-1.42.4-0.51.0
Patch foraging indifference point AUC0.30.41.00.6-0.3-1.00.3
Delay disc. indifference point, 0s delay1.11.23.21.2-1.80.1-0.6
Delay disc. indifference point, 16s delay3.23.56.52.6-1.8-1.81.0
Delay disc. indifference point, 2s delay0.40.40.90.0-0.50.7-0.9
Delay disc. indifference point, 24s delay0.60.71.10.8-0.1-1.01.1
Delay disc. indifference point, 4s delay0.20.30.4-0.70.20.6-0.5
Delay disc. indifference point, 8s delay1.92.24.11.6-0.4-2.01.5
Indifference point function ln k0.20.30.6-0.60.80.50.4
Indifference point function log k0.20.30.6-0.60.80.50.4
Patch foraging total patch changes 0 sec1.73.38.0-1.62.8-0.81.4
Patch foraging total patch changes 12 sec0.70.91.5-0.21.0-1.21.0
Patch foraging total patch changes 18 sec0.20.30.60.6-0.3-0.80.2
Patch foraging total patch changes 24 sec0.20.30.7-0.60.8-0.30.2
Patch foraging total patch changes 6 sec1.01.53.4-1.21.8-0.80.8
Patch foraging time to switch 0 sec0.40.91.50.1-1.20.8-1.2
Patch foraging water rate 0 sec0.61.33.2-1.31.80.30.5
Patch foraging water rate 12 sec0.20.40.7-0.70.80.60.2
Patch foraging water rate 18 sec0.81.33.0-0.7-0.01.7-1.2
Patch foraging water rate 24 sec1.92.74.4-2.01.22.1-1.1
Patch foraging water rate 6 sec0.40.61.3-0.31.2-0.01.0
Seeking ratio, delayed vs. immediate footshock0.40.51.0-0.4-0.71.0-0.6
Distance traveled before self-admin0.60.81.9-1.11.40.30.2
Distance traveled after self-admin1.51.83.5-1.91.80.8-0.2
Extensor digitorum longus weight0.51.94.2-2.01.80.10.1
Bone: elastic displacement1.01.22.2-1.00.11.5-1.3
Bone: elastic work1.21.63.8-1.52.00.10.5
Bone: endosteal estimation0.51.22.01.4-0.3-1.21.1
Bone: endosteal perimeter0.40.81.60.21.0-0.81.3
Epididymis fat weight0.51.83.7-1.71.90.70.1
Delta time in closed arm before/after self-admin1.11.11.61.2-0.2-1.31.0
Delta time in open arm before/after self-admin0.40.40.70.0-0.70.5-0.8
Diff in mean of infusions in LGA sessions0.40.51.4-0.31.2-0.30.7
Delay discount exponential model param0.50.61.0-0.90.31.0-0.7
Extinction: sum of active levers before priming1.61.82.9-1.1-0.21.7-1.7
Active lever presses in extinction session 60.10.10.10.1-0.30.3-0.2
Bone: final force3.96.214.8-2.33.9-1.01.9
Bone: final moment3.45.512.7-1.93.6-1.22.1
Food consumed during 24 hour testing period1.31.83.0-1.4-0.01.5-1.7
Glucose0.60.92.6-0.91.6-0.10.6
Heart weight2.13.26.8-2.62.30.8-0.3
Delay discount hyperbolic model param0.20.20.4-0.60.10.7-0.4
Intermittent access intake day 1-15 change0.20.30.6-0.80.60.5-0.3
Intermittent access intake escalation0.20.30.5-0.70.30.6-0.5
Intermittent access intake escalation 20.20.20.5-0.70.70.00.2
Intermitt. access day 1 inactive lever presses0.00.20.3-0.30.6-0.10.4
Intermitt. access day 15 inactive lever presses0.00.00.10.2-0.10.2-0.0
Intermitt. access escalation Index0.40.51.20.9-1.1-0.3-0.0
Intermittent access day 1 total infusions1.22.03.21.40.3-1.71.8
Intermittent access day 15 total infusions0.10.20.30.40.2-0.50.6
Intermittent access terminal intake (last 3 days)0.40.50.70.8-0.0-0.80.8
Intermittent access total infusions1.31.52.50.90.6-1.51.6
Intermittent access day 1 locomotion1.21.62.90.61.0-1.41.7
Intermittent access day 15 total locomotion0.10.10.20.30.2-0.40.4
Intermittent access total locomotion1.11.32.20.31.2-1.31.5
Intermittent access standard deviation0.10.20.50.20.3-0.50.7
Left kidney weight0.62.75.6-2.42.20.6-0.2
Right kidney weight1.04.59.6-2.93.10.50.1
Cocaine induced anxiety0.60.81.9-0.41.4-0.61.0
Post-drug Anxiety0.00.00.0-0.10.2-0.20.1
Baseline Anxiety1.31.53.20.5-1.80.8-1.3
Tail length0.62.35.5-1.72.4-0.10.7
Length with tail1.56.715.2-3.33.90.30.5
Length without tail1.54.89.5-3.13.10.50.1
Times rat made contact with spout0.20.20.40.0-0.50.4-0.6
Lifetime Intake1.41.73.10.51.1-1.51.8
Liver weight, left1.21.93.0-1.4-0.01.7-1.7
Liver weight, right0.81.43.0-1.61.70.30.3
Locomotor activity3.45.38.1-2.81.22.7-2.1
Locomotor testing distance1.22.13.1-1.60.21.8-1.6
Locomotor testing rearing1.22.53.9-1.60.11.9-2.0
Locomotion in novel chamber0.40.61.0-1.00.60.8-0.5
Locomotion in novel chamber post-restriction1.82.94.0-2.00.82.0-1.7
Fecal boli incidents, locomotor time 10.50.71.41.2-0.9-0.60.4
Change in fecal boli incidents, locomotor task0.30.30.60.8-0.7-0.0-0.1
Time >=10cm from walls, locomotor time 10.40.40.90.9-0.5-0.60.6
Bouts of movement, locomotor time 10.30.30.70.1-0.70.3-0.8
Total resting periods, locomotor time 10.50.61.20.4-1.10.4-1.0
Rest time, locomotor task time 10.40.50.91.0-0.6-0.70.6
Distance moved, locomotor task time 10.00.00.10.3-0.1-0.10.0
Vertical activity count, locomotor time 10.30.81.2-1.10.51.0-0.8
Time >=10cm from walls, locomotor time 20.50.81.71.1-1.30.10.2
Bouts of movement, locomotor time 20.50.71.0-1.00.31.0-1.0
Total resting periods, locomotor time 20.30.50.7-0.80.30.7-0.8
Rest time, locomotor task time 20.20.30.6-0.40.8-0.40.4
Distance moved, locomotor task time 20.50.61.21.1-0.8-0.40.5
Vertical activity count, locomotor time 20.00.10.2-0.20.20.40.1
Light reinforcement 10.30.71.21.1-0.3-0.80.8
Light reinforcement 22.84.47.02.3-0.5-2.72.2
Bone: marrow area0.51.11.91.4-0.4-1.11.0
Bone: maximum diameter1.32.46.1-1.42.5-0.51.2
Bone: maximum force4.27.417.6-3.34.20.11.0
Bone: maximum moment3.35.714.0-2.73.7-0.21.2
Mean time between licks in bursts0.71.84.5-1.32.1-0.21.0
Mean num. licks in bursts0.10.20.4-0.60.20.4-0.4
Cd content in liver1.01.12.30.20.9-1.21.5
Co content in liver0.00.00.1-0.30.30.1-0.1
Cu content in liver3.03.66.6-1.3-0.52.6-2.4
Fe content in liver0.40.51.40.9-1.2-0.1-0.2
K content in liver1.51.43.11.6-1.80.2-0.4
Mg content in liver0.10.10.20.4-0.30.2-0.1
Mn content in liver0.20.20.5-0.40.40.7-0.4
Na content in liver2.02.13.40.0-1.51.7-1.8
Rb content in liver2.32.74.80.90.8-2.12.2
Se content in liver0.60.71.3-0.6-0.11.2-1.0
Sr content in liver0.30.20.50.6-0.70.1-0.2
Zn content in liver0.20.30.7-0.2-0.10.8-0.6
Bone: minimum diameter1.01.84.3-1.52.1-0.20.8
Time in familiar zone, hab. session 10.00.00.1-0.10.3-0.10.1
Time in novel zone, hab. session 10.00.00.00.10.00.00.1
Total zone transitions, hab. session 10.81.12.0-0.5-0.51.4-1.4
Total locomotion distance, hab. session 12.02.95.2-0.7-0.92.3-2.3
Locomotion velocity, hab. session 12.02.85.0-0.6-1.02.2-2.2
Time in familiar zone, hab. session 20.00.00.1-0.00.1-0.30.2
Time in novel zone, hab. session 20.10.10.30.5-0.2-0.30.4
Total zone transitions, hab. session 20.20.30.5-0.2-0.30.7-0.7
Total locomotion distance, hab. session 21.72.23.8-1.40.12.0-1.7
Locomotion velocity, hab. session 21.82.44.3-1.40.02.1-1.9
Novel to familiar place preference ratio1.11.21.81.2-0.3-1.31.2
Novelty place preference1.11.21.81.4-0.4-1.21.1
Time in novel zone, NPP test1.01.12.01.4-0.7-1.00.9
Total zone transitions, NPP test1.11.63.0-0.7-0.61.7-1.7
Total locomotion distance, NPP test2.83.86.7-1.2-0.72.6-2.6
Locomotion velocity, NPP test2.23.15.6-0.9-0.82.4-2.4
Intraocular pressure1.11.52.7-0.01.2-1.41.6
Delta distance traveled before/after self-admin0.60.61.1-1.01.00.4-0.1
Delta ambulatory time before/after self-admin0.20.20.4-0.60.50.3-0.1
Parametrial fat weight2.35.510.20.71.8-2.83.2
Pavlov. Cond. lever latency4.75.912.03.5-1.6-2.22.1
Pavlov. Cond. magazine entry latency0.20.30.8-0.90.6-0.10.1
Pavlov. Cond. change in total contacts2.72.96.9-2.62.00.7-0.4
Pavlov. Cond. index score1.92.45.2-2.30.91.4-1.3
Pavlov. Cond. latency score2.93.67.4-2.71.01.8-1.7
Pavlov. Cond. lever contacts3.84.59.7-3.11.51.8-1.7
Pavlov. Cond. magazine entry number0.40.41.21.1-0.80.1-0.1
Pavlov. Cond. intertrial magazine entries1.21.52.0-1.40.61.4-1.2
Pavlov. Cond. lever-magazine prob. diff.1.51.84.2-2.00.81.2-1.1
Pavlov. Cond. response bias1.01.23.1-1.81.00.7-0.6
Pavlov. Cond. lever latency0.60.81.60.9-1.30.5-0.6
Pavlov. Cond. magazine entry latency0.70.81.2-1.01.1-0.90.5
Pavlov. Cond. change in total contacts0.60.92.0-1.21.4-0.40.5
Pavlov. Cond. index score0.91.22.4-1.11.5-0.90.8
Pavlov. Cond. latency score0.70.91.6-1.11.3-0.80.5
Pavlov. Cond. lever contacts0.50.71.5-1.01.2-0.50.4
Pavlov. Cond. magazine entry number1.31.53.01.2-1.71.0-0.9
Pavlov. Cond. intertrial magazine entries0.81.32.21.0-1.51.1-0.9
Pavlov. Cond. lever-magazine prob. diff.1.01.42.7-1.21.6-0.90.8
Pavlov. Cond. response bias0.70.92.0-1.01.4-0.60.6
Time in closed arm before self-admin3.03.89.1-1.93.0-0.51.6
Time in closed arm after self-admin3.94.18.20.51.8-2.22.9
Time in open arm before self-admin2.22.54.3-1.2-0.32.0-2.1
Time in open arm after self-admin5.96.410.2-2.3-0.33.2-3.2
Bone: periosteal estimation0.81.63.9-1.02.0-0.61.1
Bone: periosteal perimeter2.23.88.9-1.73.0-0.91.6
Bone: post-yield work0.10.20.5-0.1-0.10.7-0.5
Progressive ratio test 1 active lever presses1.11.43.5-0.71.9-0.61.1
Progressive ratio test 1 breakpoint1.01.23.1-0.71.8-0.51.0
Progressive ratio test 1 inactive lever presses0.60.92.2-0.91.50.10.7
Progressive ratio test 2 active lever presses0.91.11.80.80.5-1.31.3
Progressive ratio test 2 breakpoint0.80.91.50.80.3-1.21.2
Progressive ratio test 2 inactive lever presses0.40.61.3-0.31.1-0.50.9
Incentive Sensitization - Responses1.92.74.72.2-1.0-1.81.3
Incentive Sensitization - Breakpoint2.22.95.32.3-1.3-1.81.2
Sum of active levers in priming session hrs 5-62.01.83.00.4-1.71.1-1.7
Progressive ratio0.20.30.50.7-0.5-0.70.4
Food seeking constrained by brief footshock0.10.10.30.3-0.6-0.2-0.2
Seeking ratio, punishment vs. effort0.50.71.2-0.6-0.11.1-1.1
Retroperitoneal fat weight1.25.210.8-1.43.3-1.32.5
Reaction time number correct2.34.48.0-2.10.42.8-2.2
Reaction time mean minus median0.00.10.2-0.30.00.0-0.4
Reaction time mean minus median AUC0.00.00.1-0.20.20.0-0.3
Reaction time num false alarms0.40.61.3-0.31.1-0.80.7
Reaction time num false alarms AUC0.30.50.8-0.10.9-0.70.7
Reaction time trials correct on left2.34.48.0-2.10.42.8-2.2
Reaction time trials on left2.34.47.9-2.20.52.8-2.2
Reaction time mean1.62.65.01.20.3-2.22.0
Reaction time mean AUC1.42.34.21.5-0.2-2.01.6
Median of all reaction times2.94.17.31.80.1-2.72.5
Reaction time omissions0.50.71.9-0.61.4-0.50.5
Reaction time false alarm rate1.21.63.10.60.9-1.81.5
Reaction time premature initiation rate1.31.82.8-1.40.21.6-1.7
Reaction time premature initiations2.64.77.1-2.30.52.7-2.4
Std. dev. reaction times0.20.30.5-0.30.7-0.60.3
Reaction time trials completed2.34.47.9-2.20.52.8-2.2
Reaction time trials AUC2.03.86.7-2.10.62.6-1.9
Run reversals in cocaine runway, females1.41.43.4-0.81.8-0.51.1
Run reversals in cocaine runway, males0.80.81.80.0-1.00.8-1.3
Latency to leave start box in cocaine runway0.00.00.00.0-0.2-0.10.1
Latency to leave start box in cocaine runway, F0.20.30.6-0.80.60.4-0.1
Latency to leave start box in cocaine runway, M1.81.73.01.7-1.4-1.10.7
Std. dev. time between licks in bursts0.91.23.2-0.91.8-0.40.9
Total sessions with >9 infusions1.82.14.6-0.72.1-1.01.6
Short access day 1 total inactive lever presses1.41.83.80.70.6-1.61.9
Short access day 10 total inactive lever presses0.00.10.20.1-0.40.2-0.1
Short access day 1 total infusions1.41.94.4-1.02.1-0.51.4
Short access day 10 total infusions0.30.30.7-0.10.8-0.20.8
Short access total infusions0.91.22.20.01.3-1.01.5
Short access day 1 locomotion3.03.86.8-0.62.6-1.42.4
Short access day 10 total locomotion1.93.46.4-2.52.21.5-0.5
Short access total locomotion1.31.64.2-1.12.0-0.30.9
One hour access (0.3 mA shock)0.91.11.90.90.2-1.21.4
Compulsive drug intake1.01.22.51.5-1.6-0.50.0
One hour access (shock baseline)1.11.72.8-0.11.5-1.31.7
Social response proportion1.92.14.8-1.82.2-0.20.5
Social responses1.52.03.8-2.01.21.3-0.9
Social time0.40.50.9-1.00.80.7-0.2
Soleus weight0.82.44.40.71.1-1.92.1
Bone: stiffness3.25.312.2-2.83.5-0.21.1
Tibialis anterior weight0.93.16.7-2.61.21.4-1.4
Time to tail flick, vehicle, before self-admin1.01.12.21.5-0.7-1.00.7
Time to tail flick, vehicle, after self-admin0.10.10.3-0.30.5-0.30.3
Time to tail flick, test, before self-admin1.21.32.5-0.41.6-1.01.2
Time to tail flick, test, after self-admin2.12.24.42.1-1.5-1.30.7
Delta time to tail flick, vehicle, before/after SA0.60.61.3-1.10.40.8-0.6
Delta time to tail flick, test, before/after SA1.41.43.31.5-1.8-0.1-0.3
Tibia length0.61.63.2-1.81.70.00.2
Ambulatory time before self-admin0.81.22.9-1.31.70.30.4
Ambulatory time after self-admin2.73.25.9-2.42.41.1-0.2
Bone: tissue strength0.00.00.1-0.10.30.20.0
Total heroin consumption0.00.00.10.10.3-0.20.1
Bone: trabecular number1.32.25.0-2.21.80.4-0.4
Bone: trabecular spacing0.40.51.31.2-0.7-0.40.4
Bone: trabecular thickness1.41.73.5-1.91.50.9-0.6
Bone: trabecular tissue density0.60.91.9-0.2-0.61.4-1.2
Water consumed over 24 hours0.60.91.3-1.20.40.9-1.1
Number of responses in last shaping day0.30.30.5-0.70.50.7-0.2