Mrgprf

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Mrgprf 0.05 0.04 1.3e-04 0.04 0.03 0.04 0.04 1.1e-05 6.8e-05 5.4e-05 4.2e-05
2 Brain mRNA stability Mrgprf 0.13 0.07 1.7e-12 0.11 0.1 0.13 0.06 3.3e-10 6.5e-10 5.3e-12 2.6e-06
3 BLA gene expression Mrgprf 0.1 0.08 1.7e-03 0.04 0.02 0.08 0.03 3.0e-03 2.8e-02 4.7e-05 6.6e-03
4 Liver gene expression Mrgprf 0.03 0.02 4.7e-03 0.01 0.01 0.01 0.01 1.9e-02 5.5e-02 6.3e-02 5.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.32.35.9-0.41.7-0.0-2.4
Area under the delay curve0.50.61.20.21.00.2-1.1
BMI with tail1.75.411.5-2.70.4-1.6-3.4
BMI without tail0.91.94.7-1.70.3-0.3-2.2
Body weight2.29.317.3-4.2-2.5-2.9-2.2
Weight adjusted by age1.01.12.2-1.5-1.1-0.9-0.4
Bone surface1.83.18.1-1.80.9-0.6-2.8
Bone volume1.11.84.9-0.71.40.1-2.2
Breakpoint value in progressive ratio session2.02.24.3-1.6-1.0-2.1-0.9
Number of licking bursts0.10.20.3-0.10.40.5-0.4
Context. condit. distance diff. score0.60.71.81.31.00.4-0.0
Locomotion velocity, session 10.10.10.1-0.00.30.4-0.2
Locomotion distance, session 10.91.13.0-0.71.0-0.2-1.7
Locomotion velocity, session 21.41.63.7-1.9-1.1-1.1-0.6
Locomotion distance, session 20.60.81.7-1.20.2-0.2-1.3
Locomotion velocity, session 30.91.12.6-0.11.30.1-1.6
Locomotion distance, session 30.10.10.1-0.00.4-0.1-0.4
Stereotopy head waving bouts, day 30.91.12.00.51.40.5-1.4
Stereotopy head waving duration, day 31.01.22.21.11.51.1-0.7
Locomotion velocity, session 70.60.61.20.10.8-0.8-1.1
Locomotion distance, session 70.20.30.6-0.5-0.0-0.8-0.6
Stereotopy head waving bouts, day 70.91.01.90.81.40.8-1.0
Stereotopy head waving duration, day 71.01.23.3-0.70.6-0.7-1.8
Locomotion velocity, session 81.21.42.6-1.3-0.9-1.6-0.7
Locomotion distance, session 80.30.51.10.61.00.3-0.5
Degree of sensitization distance0.30.30.5-0.40.1-0.6-0.7
Degree of sensitization stereotypy0.30.31.1-0.30.4-0.1-1.1
Conditioned locomotion2.73.16.0-1.8-2.4-1.51.0
Cocaine response after cond. corrected0.10.10.20.40.3-0.1-0.1
Cocaine response after cond. not corrected0.20.30.50.40.70.2-0.6
Cocaine response before conditioning0.30.30.6-0.20.50.8-0.6
Saline control response1.92.54.4-2.1-1.3-1.7-1.0
Bone: connectivity density2.13.28.7-1.71.0-0.7-2.9
Bone: cortical apparent density1.11.43.2-1.1-1.1-1.8-0.0
Bone: cortical area0.40.61.2-0.9-1.1-0.50.6
Bone: cortical porosity0.00.00.10.10.3-0.1-0.2
Bone: cortical porosity0.20.20.3-0.6-0.3-0.5-0.2
Bone: cortical thickness3.45.610.1-2.9-3.2-1.80.9
Bone: cortical thickness1.41.73.0-1.7-1.7-0.80.2
Bone: cortical tissue density1.21.63.5-1.2-1.2-1.9-0.0
Condit. Reinf. active minus inactive responses0.30.30.7-0.20.4-0.7-0.9
Condit. Reinf. active-inactive response ratio0.10.10.30.10.4-0.1-0.5
Condit. Reinf. active responses0.10.10.2-0.10.1-0.5-0.3
Condit. Reinf. inactive responses0.00.00.10.2-0.0-0.00.3
Incentive salience index mean0.30.41.0-0.30.2-1.0-0.8
Condit. Reinf. lever presses0.20.31.0-0.1-0.3-1.00.1
Condit. Reinf. active minus inactive responses1.11.33.30.91.80.3-1.1
Condit. Reinf. active-inactive response ratio1.71.73.41.51.81.1-0.3
Condit. Reinf. active responses1.01.42.80.21.6-0.6-1.7
Condit. Reinf. inactive responses1.01.32.4-0.90.2-1.4-1.5
Condit. Reinf. lever presses0.60.82.2-0.90.4-0.2-1.5
Condit. Reinf. lever reinforcers received1.01.53.2-0.01.4-0.9-1.8
Conditioned reinforcement - actives0.40.41.10.6-0.20.31.1
Conditioned reinforcement - inactives3.84.37.22.71.92.21.0
Conditioned locomotion6.07.311.63.41.43.02.5
Patch foraging indifference point 0 sec0.20.20.70.90.40.2-0.1
Patch foraging indifference point AUC1.51.72.9-1.3-1.7-1.50.2
Delay disc. indifference point, 0s delay1.01.12.40.01.40.1-1.6
Delay disc. indifference point, 16s delay1.21.22.01.41.11.30.1
Delay disc. indifference point, 2s delay0.50.51.40.61.20.2-0.6
Delay disc. indifference point, 24s delay0.10.10.3-0.2-0.50.20.4
Delay disc. indifference point, 4s delay0.30.30.60.10.5-0.5-0.8
Delay disc. indifference point, 8s delay0.20.20.6-0.20.4-0.1-0.8
Indifference point function ln k2.63.66.62.61.81.91.0
Indifference point function log k2.63.66.62.61.81.91.0
Patch foraging total patch changes 0 sec0.10.10.30.6-0.3-0.30.3
Patch foraging total patch changes 12 sec2.02.63.7-1.9-1.7-1.9-0.6
Patch foraging total patch changes 18 sec0.30.40.8-0.5-0.6-0.9-0.6
Patch foraging total patch changes 24 sec1.11.32.2-1.1-1.5-1.30.2
Patch foraging total patch changes 6 sec0.71.01.6-1.1-0.4-1.0-1.3
Patch foraging time to switch 0 sec1.52.26.2-1.40.7-0.5-2.5
Patch foraging water rate 0 sec3.15.010.32.6-0.11.73.2
Patch foraging water rate 12 sec5.28.012.13.10.63.13.5
Patch foraging water rate 18 sec1.31.72.31.50.91.41.3
Patch foraging water rate 24 sec2.02.76.91.6-0.21.32.6
Patch foraging water rate 6 sec1.62.36.01.4-0.51.02.4
Seeking ratio, delayed vs. immediate footshock0.50.61.2-0.40.5-0.9-1.1
Distance traveled before self-admin0.10.10.2-0.30.10.1-0.4
Distance traveled after self-admin0.10.10.30.00.20.5-0.3
Extensor digitorum longus weight4.618.030.6-5.5-4.3-4.6-1.2
Bone: elastic displacement1.41.64.20.2-1.40.42.0
Bone: elastic work1.31.63.4-1.6-1.8-0.10.8
Bone: endosteal estimation1.73.76.32.02.52.0-0.8
Bone: endosteal perimeter2.85.911.62.83.41.7-1.0
Epididymis fat weight2.25.28.22.92.02.71.0
Delta time in closed arm before/after self-admin0.60.61.0-1.0-1.0-0.50.3
Delta time in open arm before/after self-admin0.20.20.50.30.70.6-0.1
Diff in mean of infusions in LGA sessions0.40.40.7-0.6-0.8-0.80.0
Delay discount exponential model param0.40.40.9-0.2-0.8-0.00.9
Extinction: sum of active levers before priming2.32.34.0-2.0-0.8-1.5-1.5
Active lever presses in extinction session 61.61.52.5-1.2-1.6-1.40.6
Bone: final force1.11.73.0-1.7-0.7-1.5-1.1
Bone: final moment0.81.32.5-1.6-0.6-1.2-1.0
Food consumed during 24 hour testing period0.40.50.90.50.21.00.8
Glucose1.82.65.51.72.31.1-0.9
Heart weight0.81.12.21.51.10.90.3
Delay discount hyperbolic model param0.40.40.9-0.2-0.80.11.0
Intermittent access intake day 1-15 change1.11.12.31.50.40.81.1
Intermittent access intake escalation1.11.02.31.50.70.90.7
Intermittent access intake escalation 20.50.51.21.10.10.30.7
Intermitt. access day 1 inactive lever presses0.91.01.61.20.91.20.2
Intermitt. access day 15 inactive lever presses2.02.24.01.41.62.00.3
Intermitt. access escalation Index1.71.53.11.70.81.11.0
Intermittent access day 1 total infusions3.23.79.11.73.01.2-1.1
Intermittent access day 15 total infusions5.05.68.93.02.82.40.4
Intermittent access terminal intake (last 3 days)3.43.76.62.42.61.6-0.0
Intermittent access total infusions2.42.75.31.82.31.3-0.4
Intermittent access day 1 locomotion1.61.74.10.82.00.5-1.4
Intermittent access day 15 total locomotion3.13.45.42.32.21.80.3
Intermittent access total locomotion4.45.09.72.53.11.9-0.5
Intermittent access standard deviation0.60.71.11.10.61.00.4
Left kidney weight0.61.72.51.60.41.41.4
Right kidney weight0.61.73.71.3-0.31.11.9
Cocaine induced anxiety0.20.20.70.10.30.80.1
Post-drug Anxiety0.70.81.5-1.1-1.2-0.60.2
Baseline Anxiety2.32.44.5-1.5-1.7-2.10.0
Tail length0.92.86.6-1.6-2.6-1.20.8
Length with tail2.48.814.6-3.1-3.8-3.30.1
Length without tail2.24.86.8-2.5-2.5-2.6-0.5
Times rat made contact with spout0.60.61.3-0.70.3-0.8-1.1
Lifetime Intake1.92.14.51.62.11.1-0.4
Liver weight, left0.10.10.20.50.40.10.2
Liver weight, right0.20.40.80.1-0.30.80.9
Locomotor activity1.01.63.61.10.51.91.1
Locomotor testing distance1.11.94.11.30.42.01.2
Locomotor testing rearing1.11.73.01.21.51.7-0.1
Locomotion in novel chamber3.64.47.62.82.61.60.7
Locomotion in novel chamber post-restriction2.02.44.02.01.61.50.9
Fecal boli incidents, locomotor time 10.00.10.10.30.30.10.1
Change in fecal boli incidents, locomotor task0.30.30.4-0.6-0.1-0.6-0.6
Time >=10cm from walls, locomotor time 12.62.65.51.22.41.3-1.2
Bouts of movement, locomotor time 10.91.01.8-0.8-1.1-1.30.4
Total resting periods, locomotor time 10.50.61.1-0.5-0.9-1.00.5
Rest time, locomotor task time 11.21.32.41.10.21.21.6
Distance moved, locomotor task time 10.50.61.6-0.20.6-0.6-1.3
Vertical activity count, locomotor time 10.80.81.31.11.01.0-0.3
Time >=10cm from walls, locomotor time 20.10.10.20.4-0.10.30.5
Bouts of movement, locomotor time 20.40.40.7-0.9-0.7-0.6-0.1
Total resting periods, locomotor time 20.20.20.3-0.6-0.3-0.4-0.2
Rest time, locomotor task time 21.82.13.81.52.01.5-0.2
Distance moved, locomotor task time 20.91.12.3-0.9-1.5-1.00.4
Vertical activity count, locomotor time 21.31.43.2-0.2-1.80.21.5
Light reinforcement 10.30.61.11.00.20.61.1
Light reinforcement 21.52.03.82.00.81.31.4
Bone: marrow area1.73.86.32.02.52.1-0.8
Bone: maximum diameter0.10.30.40.50.20.60.6
Bone: maximum force1.22.15.5-1.50.6-0.7-2.3
Bone: maximum moment1.01.74.5-1.40.5-0.5-2.1
Mean time between licks in bursts1.21.73.4-1.4-1.1-1.9-0.3
Mean num. licks in bursts0.20.30.9-0.00.0-1.0-0.4
Cd content in liver1.21.32.11.50.81.21.1
Co content in liver0.60.71.80.4-0.80.31.3
Cu content in liver0.10.20.5-0.4-0.70.10.2
Fe content in liver0.00.00.1-0.2-0.1-0.2-0.2
K content in liver1.01.02.6-1.10.40.2-1.6
Mg content in liver2.22.33.60.11.81.5-1.9
Mn content in liver0.80.91.7-1.3-0.7-0.9-0.7
Na content in liver0.30.30.7-0.2-0.60.80.5
Rb content in liver1.92.35.11.32.31.1-1.2
Se content in liver0.40.51.00.51.00.2-0.8
Sr content in liver1.91.83.0-1.6-1.7-1.20.2
Zn content in liver0.40.51.1-1.0-0.9-0.1-0.2
Bone: minimum diameter1.52.86.41.42.50.9-1.4
Time in familiar zone, hab. session 11.21.12.70.81.01.7-0.3
Time in novel zone, hab. session 10.30.30.8-0.3-0.5-0.90.2
Total zone transitions, hab. session 10.30.40.6-0.80.10.6-0.6
Total locomotion distance, hab. session 11.01.43.70.91.11.90.1
Locomotion velocity, hab. session 10.50.72.00.40.71.40.1
Time in familiar zone, hab. session 20.60.61.4-0.7-1.2-0.40.6
Time in novel zone, hab. session 20.60.61.30.21.10.1-1.1
Total zone transitions, hab. session 22.22.87.9-1.21.3-0.6-2.8
Total locomotion distance, hab. session 20.81.02.10.11.40.2-1.4
Locomotion velocity, hab. session 20.81.12.40.41.60.6-1.2
Novel to familiar place preference ratio0.50.51.0-0.30.2-0.8-1.0
Novelty place preference0.30.30.8-0.00.5-0.5-0.9
Time in novel zone, NPP test0.40.40.9-0.00.5-0.6-1.0
Total zone transitions, NPP test0.71.02.5-1.10.5-0.4-1.6
Total locomotion distance, NPP test0.30.41.00.21.00.3-0.7
Locomotion velocity, NPP test0.20.30.80.20.90.5-0.4
Intraocular pressure0.81.02.20.7-0.31.21.5
Delta distance traveled before/after self-admin0.00.00.00.10.10.20.1
Delta ambulatory time before/after self-admin0.00.00.1-0.2-0.3-0.20.1
Parametrial fat weight1.63.05.62.22.41.3-0.3
Pavlov. Cond. lever latency0.10.20.40.30.10.60.5
Pavlov. Cond. magazine entry latency0.60.81.60.41.2-0.1-1.2
Pavlov. Cond. change in total contacts0.50.51.10.81.00.1-0.5
Pavlov. Cond. index score0.10.10.20.40.30.1-0.1
Pavlov. Cond. latency score0.10.10.20.30.4-0.2-0.3
Pavlov. Cond. lever contacts0.00.00.1-0.00.1-0.2-0.3
Pavlov. Cond. magazine entry number0.10.10.2-0.5-0.2-0.2-0.2
Pavlov. Cond. intertrial magazine entries0.40.51.10.4-0.60.71.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.30.2-0.0-0.2
Pavlov. Cond. response bias0.10.10.10.30.30.3-0.1
Pavlov. Cond. lever latency0.20.20.60.2-0.3-0.80.3
Pavlov. Cond. magazine entry latency2.12.44.3-1.9-0.1-1.3-2.1
Pavlov. Cond. change in total contacts0.40.61.6-0.40.7-0.2-1.3
Pavlov. Cond. index score0.50.71.6-1.00.2-0.3-1.3
Pavlov. Cond. latency score0.40.51.3-0.80.2-0.1-1.1
Pavlov. Cond. lever contacts0.10.10.2-0.2-0.10.50.2
Pavlov. Cond. magazine entry number2.53.15.42.20.21.52.3
Pavlov. Cond. intertrial magazine entries0.70.92.21.50.50.51.0
Pavlov. Cond. lever-magazine prob. diff.0.70.91.9-1.20.0-0.6-1.4
Pavlov. Cond. response bias0.30.50.9-0.90.0-0.4-0.9
Time in closed arm before self-admin0.20.20.40.40.60.3-0.3
Time in closed arm after self-admin0.10.10.2-0.2-0.3-0.40.3
Time in open arm before self-admin0.20.20.6-0.5-0.8-0.10.1
Time in open arm after self-admin0.10.10.4-0.1-0.30.70.2
Bone: periosteal estimation0.20.50.80.60.80.9-0.1
Bone: periosteal perimeter0.30.41.00.61.0-0.1-0.5
Bone: post-yield work4.46.011.20.83.31.0-3.3
Progressive ratio test 1 active lever presses0.80.81.41.20.70.90.8
Progressive ratio test 1 breakpoint0.70.71.21.10.50.80.9
Progressive ratio test 1 inactive lever presses0.30.30.70.60.50.80.1
Progressive ratio test 2 active lever presses2.22.33.51.91.41.80.8
Progressive ratio test 2 breakpoint2.52.84.62.11.11.91.3
Progressive ratio test 2 inactive lever presses5.56.49.33.12.63.00.8
Incentive Sensitization - Responses0.30.30.60.60.60.80.1
Incentive Sensitization - Breakpoint0.50.60.90.90.71.00.2
Sum of active levers in priming session hrs 5-61.61.53.0-0.4-1.70.21.7
Progressive ratio2.93.47.5-1.40.7-1.9-2.7
Food seeking constrained by brief footshock0.40.50.6-0.8-0.7-0.7-0.4
Seeking ratio, punishment vs. effort1.82.34.91.0-0.81.62.2
Retroperitoneal fat weight3.411.319.14.43.13.81.5
Reaction time number correct0.40.61.0-0.7-1.0-0.80.5
Reaction time mean minus median0.71.02.7-1.6-0.3-0.3-1.0
Reaction time mean minus median AUC0.60.82.4-1.6-0.8-0.3-0.4
Reaction time num false alarms0.50.71.5-0.3-1.20.01.0
Reaction time num false alarms AUC0.81.12.4-1.0-1.6-0.90.6
Reaction time trials correct on left0.40.61.0-0.7-1.0-0.80.5
Reaction time trials on left0.50.71.3-0.8-1.1-0.90.5
Reaction time mean0.40.51.10.10.81.0-0.6
Reaction time mean AUC0.40.61.00.20.91.0-0.6
Median of all reaction times0.50.71.10.51.11.1-0.7
Reaction time omissions1.11.52.9-1.7-1.2-1.1-0.6
Reaction time false alarm rate0.30.41.0-0.4-1.0-0.30.6
Reaction time premature initiation rate1.72.34.7-2.2-1.5-1.3-0.7
Reaction time premature initiations2.83.96.9-2.6-2.3-1.8-0.3
Std. dev. reaction times0.20.30.6-0.80.10.2-0.7
Reaction time trials completed0.50.71.3-0.8-1.1-0.90.5
Reaction time trials AUC0.40.50.9-0.6-0.9-0.80.4
Run reversals in cocaine runway, females1.31.23.0-1.10.6-0.5-1.7
Run reversals in cocaine runway, males0.50.51.0-0.5-1.0-0.00.9
Latency to leave start box in cocaine runway0.70.81.40.31.20.7-1.1
Latency to leave start box in cocaine runway, F0.50.51.00.20.90.5-1.0
Latency to leave start box in cocaine runway, M0.00.00.10.10.20.2-0.1
Std. dev. time between licks in bursts1.41.72.3-1.0-1.5-1.51.0
Total sessions with >9 infusions0.40.40.90.81.00.40.1
Short access day 1 total inactive lever presses1.61.72.71.61.31.60.4
Short access day 10 total inactive lever presses1.41.64.01.10.92.00.3
Short access day 1 total infusions1.21.32.71.41.60.7-0.3
Short access day 10 total infusions1.82.05.10.62.3-0.4-1.5
Short access total infusions0.70.82.10.61.5-0.1-0.7
Short access day 1 locomotion1.21.33.11.21.80.6-0.6
Short access day 10 total locomotion0.70.71.70.71.30.2-0.9
Short access total locomotion0.50.51.10.51.1-0.2-0.8
One hour access (0.3 mA shock)5.46.39.53.12.43.11.0
Compulsive drug intake2.82.95.1-2.2-2.3-1.3-0.0
One hour access (shock baseline)6.27.211.83.42.53.11.2
Social response proportion0.60.71.3-0.70.3-0.9-1.1
Social responses0.10.20.3-0.6-0.5-0.40.1
Social time0.30.40.8-0.9-0.4-0.7-0.4
Soleus weight2.36.812.93.61.32.52.5
Bone: stiffness1.32.05.1-1.10.8-1.1-2.3
Tibialis anterior weight5.920.235.2-5.8-5.9-3.30.5
Time to tail flick, vehicle, before self-admin1.61.63.4-0.51.0-1.4-1.8
Time to tail flick, vehicle, after self-admin1.71.83.3-1.8-0.8-1.4-1.2
Time to tail flick, test, before self-admin1.01.02.00.21.4-0.3-1.4
Time to tail flick, test, after self-admin0.20.20.4-0.2-0.4-0.7-0.0
Delta time to tail flick, vehicle, before/after SA0.50.51.1-1.1-0.9-0.3-0.1
Delta time to tail flick, test, before/after SA2.42.15.2-0.9-2.3-0.71.5
Tibia length0.41.12.2-0.6-1.5-0.51.4
Ambulatory time before self-admin0.20.20.4-0.10.5-0.2-0.6
Ambulatory time after self-admin1.01.12.30.71.50.8-0.9
Bone: tissue strength0.80.71.80.50.91.4-0.3
Total heroin consumption3.54.17.2-2.3-1.8-2.7-0.8
Bone: trabecular number1.21.95.1-0.51.4-0.2-2.2
Bone: trabecular spacing0.50.61.50.4-0.90.01.2
Bone: trabecular thickness1.41.63.60.81.91.0-1.2
Bone: trabecular tissue density3.04.28.73.00.81.52.3
Water consumed over 24 hours0.40.50.8-0.9-0.1-0.6-0.9
Number of responses in last shaping day0.40.40.70.80.20.90.6