Mrgprf

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Mrgprf 0.08 0.06 6.6e-09 0.07 0.05 0.05 0.05 3.2e-10 1.9e-08 5.5e-08 1.5e-08
2 Brain mRNA stability Mrgprf 0.13 0.07 1.9e-12 0.14 0.14 0.14 0.14 3.7e-13 8.7e-13 6.1e-13 1.3e-12
3 BLA gene expression Mrgprf 0.09 0.07 3.1e-03 0.05 0.05 0.02 0.05 1.1e-03 1.6e-03 1.9e-02 7.8e-04
4 Liver gene expression Mrgprf 0.03 0.02 3.4e-03 0.02 0.01 0.01 0.01 1.9e-03 3.5e-02 3.2e-02 1.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.57.3-0.51.5-0.2-2.7
Area under the delay curve0.30.51.10.10.8-0.1-1.0
BMI with tail1.24.110.9-2.10.70.7-3.3
BMI without tail0.42.24.6-2.2-0.50.5-1.9
Body weight1.77.514.0-3.7-1.82.7-2.3
Weight adjusted by age0.30.71.2-1.1-1.00.9-0.0
Bone surface1.73.49.8-1.80.60.3-3.1
Bone volume1.02.06.1-0.71.1-0.4-2.5
Breakpoint value in progressive ratio session1.22.24.5-1.7-0.92.1-0.9
Number of licking bursts0.00.00.1-0.00.2-0.1-0.4
Context. condit. distance diff. score0.50.61.41.20.9-0.60.0
Locomotion velocity, session 10.00.00.10.30.20.0-0.2
Locomotion distance, session 10.81.03.2-0.21.00.1-1.8
Locomotion velocity, session 21.21.42.8-1.7-1.11.2-0.6
Locomotion distance, session 20.40.61.6-0.80.20.2-1.3
Locomotion velocity, session 30.91.12.70.11.2-0.3-1.6
Locomotion distance, session 30.10.10.20.10.4-0.1-0.4
Stereotopy head waving bouts, day 30.81.01.60.11.2-0.9-1.2
Stereotopy head waving duration, day 30.91.11.90.81.4-1.2-0.6
Locomotion velocity, session 70.50.61.2-0.10.70.8-1.1
Locomotion distance, session 70.20.20.5-0.3-0.00.7-0.6
Stereotopy head waving bouts, day 70.80.91.80.11.2-0.8-1.3
Stereotopy head waving duration, day 70.91.12.9-0.90.60.5-1.7
Locomotion velocity, session 80.81.01.5-1.2-0.71.2-0.7
Locomotion distance, session 80.50.71.20.91.1-0.6-0.5
Degree of sensitization distance0.30.40.6-0.40.10.8-0.7
Degree of sensitization stereotypy0.40.41.2-0.50.4-0.0-1.1
Conditioned locomotion2.32.74.2-1.4-2.11.91.0
Cocaine response after cond. corrected0.00.10.10.30.4-0.1-0.1
Cocaine response after cond. not corrected0.20.20.40.20.7-0.4-0.5
Cocaine response before conditioning0.20.20.4-0.30.1-0.6-0.5
Saline control response2.23.04.9-2.2-1.52.0-1.0
Bone: connectivity density2.13.49.8-1.70.80.5-3.1
Bone: cortical apparent density0.40.61.0-0.7-1.00.90.5
Bone: cortical area0.30.51.1-0.9-1.1-0.00.5
Bone: cortical porosity0.10.10.3-0.10.20.6-0.2
Bone: cortical porosity0.20.30.6-0.5-0.20.8-0.2
Bone: cortical thickness2.94.99.2-2.7-3.01.51.0
Bone: cortical thickness1.01.22.0-1.4-1.41.00.1
Bone: cortical tissue density0.60.91.4-0.9-1.21.10.5
Condit. Reinf. active minus inactive responses0.20.20.7-0.30.40.2-0.8
Condit. Reinf. active-inactive response ratio0.20.20.30.10.4-0.4-0.5
Condit. Reinf. active responses0.00.00.1-0.20.10.2-0.3
Condit. Reinf. inactive responses0.00.00.10.1-0.10.20.4
Incentive salience index mean0.20.30.5-0.30.30.6-0.7
Condit. Reinf. lever presses0.10.10.6-0.1-0.10.80.1
Condit. Reinf. active minus inactive responses0.81.32.70.81.7-0.8-1.1
Condit. Reinf. active-inactive response ratio1.52.44.01.72.0-1.6-0.3
Condit. Reinf. active responses0.81.12.6-0.01.30.3-1.6
Condit. Reinf. inactive responses1.11.72.3-1.5-0.21.5-1.5
Condit. Reinf. lever presses0.60.92.7-0.80.5-0.1-1.6
Condit. Reinf. lever reinforcers received0.91.23.1-0.31.10.6-1.8
Conditioned reinforcement - actives0.10.51.50.4-0.70.21.2
Conditioned reinforcement - inactives0.71.83.61.91.5-1.10.5
Conditioned locomotion4.97.312.83.61.9-2.92.1
Patch foraging indifference point 0 sec0.00.10.20.50.20.4-0.1
Patch foraging indifference point AUC0.61.42.4-1.2-1.51.30.5
Delay disc. indifference point, 0s delay1.01.12.40.11.4-0.0-1.5
Delay disc. indifference point, 16s delay0.81.11.81.21.1-1.30.1
Delay disc. indifference point, 2s delay0.40.51.20.61.1-0.3-0.5
Delay disc. indifference point, 24s delay0.20.20.7-0.4-0.8-0.10.3
Delay disc. indifference point, 4s delay0.30.30.50.10.70.5-0.7
Delay disc. indifference point, 8s delay0.10.20.5-0.30.20.1-0.7
Indifference point function ln k1.23.77.32.71.7-1.91.0
Indifference point function log k1.23.77.32.71.7-1.91.0
Patch foraging total patch changes 0 sec0.10.30.80.1-0.50.90.3
Patch foraging total patch changes 12 sec2.12.84.1-2.0-1.62.0-0.6
Patch foraging total patch changes 18 sec0.40.82.0-0.8-0.61.4-0.5
Patch foraging total patch changes 24 sec0.41.52.3-1.2-1.51.50.3
Patch foraging total patch changes 6 sec0.91.52.0-1.4-0.61.4-1.3
Patch foraging time to switch 0 sec0.62.36.3-1.50.70.3-2.5
Patch foraging water rate 0 sec1.34.810.22.6-0.2-1.53.2
Patch foraging water rate 12 sec2.18.511.93.30.7-3.33.5
Patch foraging water rate 18 sec0.71.73.21.80.9-1.01.3
Patch foraging water rate 24 sec2.33.27.41.9-0.1-1.42.7
Patch foraging water rate 6 sec1.62.46.01.4-0.6-1.22.5
Seeking ratio, delayed vs. immediate footshock0.40.51.3-0.20.70.3-1.1
Distance traveled before self-admin0.10.20.6-0.20.4-0.0-0.8
Distance traveled after self-admin0.00.10.1-0.00.1-0.3-0.3
Extensor digitorum longus weight4.518.131.0-5.6-4.44.6-1.0
Bone: elastic displacement1.21.64.20.2-1.40.22.1
Bone: elastic work1.21.63.6-1.4-1.90.60.7
Bone: endosteal estimation1.43.35.31.92.3-1.9-0.9
Bone: endosteal perimeter2.15.210.02.53.2-1.8-1.2
Epididymis fat weight1.99.616.14.02.6-3.61.7
Delta time in closed arm before/after self-admin0.90.81.5-1.1-1.20.60.1
Delta time in open arm before/after self-admin0.40.51.00.41.0-0.5-0.6
Diff in mean of infusions in LGA sessions0.61.12.0-1.2-0.91.4-0.1
Delay discount exponential model param0.20.30.8-0.0-0.7-0.00.9
Extinction: sum of active levers before priming0.81.22.1-1.5-0.30.9-1.4
Active lever presses in extinction session 61.11.12.5-1.0-1.01.6-0.0
Bone: final force0.61.01.9-1.4-0.50.9-1.0
Bone: final moment0.50.91.8-1.3-0.50.8-0.9
Food consumed during 24 hour testing period0.30.71.80.70.1-1.30.7
Glucose2.23.47.91.72.8-1.2-1.3
Heart weight0.71.12.30.31.50.2-1.4
Delay discount hyperbolic model param0.30.40.8-0.1-0.8-0.00.9
Intermittent access intake day 1-15 change0.42.44.72.21.2-1.41.2
Intermittent access intake escalation0.42.14.02.01.0-1.31.2
Intermittent access intake escalation 20.91.53.11.71.1-1.00.9
Intermitt. access day 1 inactive lever presses0.00.00.00.1-0.0-0.10.1
Intermitt. access day 15 inactive lever presses0.31.72.81.21.7-1.6-0.3
Intermitt. access escalation Index0.72.23.31.80.6-1.81.5
Intermittent access day 1 total infusions0.92.76.61.32.6-0.7-1.4
Intermittent access day 15 total infusions1.94.77.62.82.6-2.10.4
Intermittent access terminal intake (last 3 days)2.13.67.02.32.7-1.5-0.2
Intermittent access total infusions1.82.24.91.72.2-0.9-0.5
Intermittent access day 1 locomotion0.71.22.81.01.7-0.7-0.9
Intermittent access day 15 total locomotion1.34.97.72.82.7-2.10.2
Intermittent access total locomotion5.16.210.53.13.2-2.2-0.1
Intermittent access standard deviation0.20.81.11.11.0-1.00.1
Left kidney weight0.43.55.62.31.7-2.40.6
Right kidney weight0.32.33.71.91.0-1.71.2
Cocaine induced anxiety0.00.10.20.20.5-0.3-0.4
Post-drug Anxiety0.20.20.4-0.6-0.20.4-0.6
Baseline Anxiety0.30.50.8-0.8-0.90.8-0.0
Tail length0.63.46.5-1.8-2.51.80.7
Length with tail1.98.311.2-3.4-3.33.3-0.1
Length without tail1.15.68.6-2.7-2.52.9-0.3
Times rat made contact with spout0.40.51.3-0.60.20.3-1.2
Lifetime Intake0.91.12.61.11.6-0.5-0.4
Liver weight, left0.30.51.50.6-0.3-0.41.2
Liver weight, right0.61.11.81.40.4-0.71.3
Locomotor activity0.91.32.41.60.6-1.21.0
Locomotor testing distance0.81.93.11.60.4-1.71.3
Locomotor testing rearing0.51.72.61.51.4-1.60.0
Locomotion in novel chamber3.75.09.03.02.6-2.00.6
Locomotion in novel chamber post-restriction1.13.36.32.51.9-1.60.7
Fecal boli incidents, locomotor time 10.00.10.10.40.2-0.30.1
Change in fecal boli incidents, locomotor task0.10.10.2-0.4-0.10.5-0.4
Time >=10cm from walls, locomotor time 11.92.44.61.32.1-1.4-1.1
Bouts of movement, locomotor time 10.81.11.9-0.7-1.41.30.4
Total resting periods, locomotor time 10.50.61.1-0.2-1.00.90.6
Rest time, locomotor task time 11.11.82.81.50.3-1.51.7
Distance moved, locomotor task time 10.30.82.1-0.20.90.5-1.5
Vertical activity count, locomotor time 10.11.01.61.01.3-1.0-0.6
Time >=10cm from walls, locomotor time 20.10.20.30.5-0.1-0.40.6
Bouts of movement, locomotor time 20.10.40.6-0.8-0.70.6-0.3
Total resting periods, locomotor time 20.00.10.2-0.4-0.30.3-0.4
Rest time, locomotor task time 21.32.13.31.71.8-1.6-0.0
Distance moved, locomotor task time 20.91.22.1-1.0-1.51.20.4
Vertical activity count, locomotor time 20.51.32.8-0.2-1.70.11.5
Light reinforcement 10.10.51.00.80.0-0.61.0
Light reinforcement 20.81.83.51.90.9-1.11.3
Bone: marrow area1.43.45.41.92.3-1.9-0.9
Bone: maximum diameter0.10.30.80.50.2-0.90.4
Bone: maximum force0.91.85.2-1.30.5-0.1-2.3
Bone: maximum moment0.81.64.5-1.20.4-0.2-2.1
Mean time between licks in bursts0.20.91.5-1.1-0.91.2-0.2
Mean num. licks in bursts0.00.10.1-0.10.20.2-0.4
Cd content in liver1.41.62.71.61.2-1.40.5
Co content in liver1.11.33.70.6-0.9-0.41.9
Cu content in liver0.00.10.10.1-0.0-0.30.3
Fe content in liver0.20.31.1-0.1-0.21.10.1
K content in liver0.30.30.7-0.60.2-0.1-0.8
Mg content in liver0.70.82.10.50.8-1.5-0.3
Mn content in liver1.71.93.1-1.8-1.21.6-0.7
Na content in liver0.50.60.9-0.1-0.7-0.90.9
Rb content in liver0.91.12.51.21.6-0.4-0.6
Se content in liver0.30.30.70.50.80.1-0.5
Sr content in liver1.41.22.6-1.4-1.60.40.3
Zn content in liver0.40.51.0-0.8-1.00.10.5
Bone: minimum diameter1.63.16.11.52.5-1.5-1.4
Time in familiar zone, hab. session 10.80.92.00.80.9-1.4-0.2
Time in novel zone, hab. session 10.10.20.4-0.3-0.40.60.1
Total zone transitions, hab. session 10.30.41.0-0.60.0-1.0-0.6
Total locomotion distance, hab. session 11.11.54.30.91.0-2.10.1
Locomotion velocity, hab. session 10.50.72.00.50.6-1.40.1
Time in familiar zone, hab. session 20.60.71.3-0.5-1.01.10.5
Time in novel zone, hab. session 20.60.61.20.10.9-0.7-1.1
Total zone transitions, hab. session 21.92.57.9-0.81.20.2-2.8
Total locomotion distance, hab. session 20.81.02.10.21.4-0.3-1.5
Locomotion velocity, hab. session 20.91.22.30.51.5-0.7-1.3
Novel to familiar place preference ratio0.20.30.8-0.50.10.3-0.9
Novelty place preference0.20.20.7-0.30.30.1-0.8
Time in novel zone, NPP test0.20.20.7-0.30.30.2-0.8
Total zone transitions, NPP test0.60.92.9-0.60.50.2-1.7
Total locomotion distance, NPP test0.30.51.00.51.0-0.2-0.8
Locomotion velocity, NPP test0.30.40.70.50.9-0.5-0.6
Intraocular pressure0.50.92.60.8-0.4-0.51.6
Delta distance traveled before/after self-admin0.10.10.10.2-0.2-0.20.4
Delta ambulatory time before/after self-admin0.10.10.2-0.1-0.50.20.4
Parametrial fat weight2.25.17.92.82.7-2.30.2
Pavlov. Cond. lever latency0.30.40.70.70.2-0.90.5
Pavlov. Cond. magazine entry latency0.50.61.20.21.00.3-1.1
Pavlov. Cond. change in total contacts0.30.40.80.60.9-0.2-0.5
Pavlov. Cond. index score0.00.00.10.20.30.1-0.1
Pavlov. Cond. latency score0.10.10.20.00.30.5-0.4
Pavlov. Cond. lever contacts0.10.10.3-0.30.10.5-0.4
Pavlov. Cond. magazine entry number0.00.00.0-0.1-0.2-0.2-0.1
Pavlov. Cond. intertrial magazine entries0.40.51.00.2-0.6-0.91.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.10.30.1-0.2
Pavlov. Cond. response bias0.00.00.00.10.1-0.10.1
Pavlov. Cond. lever latency0.10.10.3-0.00.00.60.0
Pavlov. Cond. magazine entry latency1.82.64.7-1.7-0.11.6-2.2
Pavlov. Cond. change in total contacts0.20.51.6-0.20.7-0.1-1.3
Pavlov. Cond. index score0.40.71.7-0.80.20.5-1.3
Pavlov. Cond. latency score0.30.41.2-0.70.10.3-1.1
Pavlov. Cond. lever contacts0.10.10.4-0.10.1-0.6-0.2
Pavlov. Cond. magazine entry number2.32.95.32.00.2-1.62.3
Pavlov. Cond. intertrial magazine entries0.30.71.20.90.2-1.01.1
Pavlov. Cond. lever-magazine prob. diff.0.60.92.0-1.00.00.6-1.4
Pavlov. Cond. response bias0.50.61.8-0.80.30.4-1.3
Time in closed arm before self-admin0.61.02.11.01.4-0.7-0.5
Time in closed arm after self-admin0.00.00.10.10.00.10.3
Time in open arm before self-admin0.91.12.7-1.1-1.60.50.5
Time in open arm after self-admin0.30.30.6-0.7-0.40.3-0.6
Bone: periosteal estimation0.20.51.20.60.7-1.1-0.2
Bone: periosteal perimeter0.30.51.10.41.0-0.3-0.8
Bone: post-yield work3.86.513.00.63.2-1.5-3.6
Progressive ratio test 1 active lever presses0.10.10.3-0.0-0.30.50.3
Progressive ratio test 1 breakpoint0.10.10.3-0.0-0.30.50.3
Progressive ratio test 1 inactive lever presses0.00.00.0-0.1-0.2-0.00.1
Progressive ratio test 2 active lever presses0.71.01.81.31.2-0.90.3
Progressive ratio test 2 breakpoint0.70.91.61.31.1-0.80.3
Progressive ratio test 2 inactive lever presses1.85.68.72.92.6-2.50.7
Incentive Sensitization - Responses0.10.40.8-0.00.80.0-0.9
Incentive Sensitization - Breakpoint0.20.40.80.20.9-0.1-0.8
Sum of active levers in priming session hrs 5-61.91.84.40.0-1.7-0.32.1
Progressive ratio1.13.28.3-0.91.31.5-2.9
Food seeking constrained by brief footshock0.20.20.3-0.6-0.20.6-0.5
Seeking ratio, punishment vs. effort0.92.14.80.8-0.9-1.52.2
Retroperitoneal fat weight4.721.135.45.94.3-5.12.1
Reaction time number correct0.10.50.7-0.5-0.90.90.5
Reaction time mean minus median0.10.92.3-1.5-0.40.4-1.1
Reaction time mean minus median AUC0.10.61.7-1.3-0.70.2-0.5
Reaction time num false alarms0.30.61.3-0.0-1.00.11.1
Reaction time num false alarms AUC0.41.01.8-0.7-1.31.10.7
Reaction time trials correct on left0.10.50.7-0.5-0.90.90.5
Reaction time trials on left0.20.61.0-0.6-1.01.00.6
Reaction time mean0.20.40.90.00.7-0.9-0.6
Reaction time mean AUC0.20.50.90.20.8-1.0-0.7
Median of all reaction times0.50.71.10.41.0-1.1-0.7
Reaction time omissions1.01.72.8-1.7-0.91.6-0.8
Reaction time false alarm rate0.20.30.7-0.2-0.90.40.6
Reaction time premature initiation rate1.32.14.0-2.0-1.51.1-0.9
Reaction time premature initiations1.13.25.6-2.4-2.21.5-0.4
Std. dev. reaction times0.10.30.6-0.70.0-0.1-0.8
Reaction time trials completed0.20.61.0-0.6-1.01.00.6
Reaction time trials AUC0.10.50.8-0.5-0.90.90.5
Run reversals in cocaine runway, females0.60.71.7-0.60.60.7-1.3
Run reversals in cocaine runway, males0.30.30.7-0.0-0.8-0.00.9
Latency to leave start box in cocaine runway0.60.81.60.41.3-0.6-1.1
Latency to leave start box in cocaine runway, F0.60.81.60.31.3-0.5-1.1
Latency to leave start box in cocaine runway, M0.00.00.1-0.10.0-0.1-0.2
Std. dev. time between licks in bursts0.91.72.9-0.8-1.51.71.0
Total sessions with >9 infusions0.40.51.4-0.5-0.11.2-0.5
Short access day 1 total inactive lever presses0.71.52.41.51.1-1.40.5
Short access day 10 total inactive lever presses0.10.31.30.00.2-1.2-0.1
Short access day 1 total infusions0.20.50.80.80.9-0.60.0
Short access day 10 total infusions0.81.32.00.01.41.2-1.4
Short access total infusions0.30.40.6-0.20.60.7-0.8
Short access day 1 locomotion0.40.61.01.01.0-0.7-0.0
Short access day 10 total locomotion0.20.61.50.81.2-0.2-0.6
Short access total locomotion0.40.61.40.91.2-0.3-0.3
One hour access (0.3 mA shock)2.73.24.72.21.9-2.00.5
Compulsive drug intake1.92.75.2-1.9-2.31.50.2
One hour access (shock baseline)2.05.18.42.92.5-2.30.8
Social response proportion0.40.51.0-0.50.40.8-1.0
Social responses0.20.30.5-0.5-0.70.70.1
Social time0.20.30.7-0.8-0.50.6-0.3
Soleus weight2.57.514.23.81.4-2.62.6
Bone: stiffness0.81.54.7-0.80.9-0.0-2.2
Tibialis anterior weight5.418.432.6-5.6-5.73.10.6
Time to tail flick, vehicle, before self-admin1.01.22.4-0.40.91.2-1.6
Time to tail flick, vehicle, after self-admin0.81.73.4-1.50.21.0-1.9
Time to tail flick, test, before self-admin1.31.43.40.81.8-0.4-1.3
Time to tail flick, test, after self-admin0.10.10.3-0.4-0.50.20.2
Delta time to tail flick, vehicle, before/after SA0.40.51.2-1.1-0.40.1-0.7
Delta time to tail flick, test, before/after SA2.63.27.4-1.2-2.70.71.9
Tibia length0.41.01.9-0.4-1.30.51.4
Ambulatory time before self-admin0.10.41.00.00.80.1-1.0
Ambulatory time after self-admin0.71.12.11.01.5-0.8-0.7
Bone: tissue strength1.11.23.90.40.8-2.0-0.4
Total heroin consumption3.64.37.0-2.6-1.92.4-0.8
Bone: trabecular number1.22.26.9-0.81.20.2-2.6
Bone: trabecular spacing0.40.61.90.4-0.70.21.4
Bone: trabecular thickness1.31.73.00.71.7-1.2-1.4
Bone: trabecular tissue density3.25.69.83.11.0-2.22.6
Water consumed over 24 hours0.30.71.2-1.1-0.30.5-1.1
Number of responses in last shaping day0.10.10.3-0.3-0.5-0.20.2