Meis3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL alternative TSS XM_039081690.2 0.03 0.03 5.8e-03 0.02 0.01 0 0.02 1.7e-03 8.0e-03 9.9e-02 6.1e-03
2 PL alternative TSS XM_039081690.2 0.13 0.15 3.0e-03 0.03 0.02 0 0.02 6.7e-04 1.7e-03 1.8e-01 1.6e-03
3 Brain mRNA stability Meis3 0.03 0.03 3.8e-03 0 0.01 0 0 1.5e-01 6.1e-02 1.4e-01 1.2e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.30.10.1-0.5
Area under the delay curve1.11.21.81.31.3-0.5
BMI with tail1.13.94.7-1.9-1.92.2
BMI without tail1.75.36.9-2.1-2.12.6
Body weight2.08.89.4-2.9-2.93.1
Weight adjusted by age0.20.30.5-0.4-0.40.7
Bone surface0.30.60.8-0.9-0.90.3
Bone volume0.10.10.2-0.4-0.4-0.1
Breakpoint value in progressive ratio session1.82.12.51.61.6-1.2
Number of licking bursts2.33.73.9-2.0-2.01.8
Context. condit. distance diff. score0.00.00.0-0.1-0.10.1
Locomotion velocity, session 10.50.60.70.70.7-0.8
Locomotion distance, session 10.10.10.20.10.1-0.5
Locomotion velocity, session 21.72.02.3-1.5-1.51.1
Locomotion distance, session 20.50.60.8-0.8-0.80.9
Locomotion velocity, session 30.10.10.1-0.3-0.30.3
Locomotion distance, session 31.11.21.61.31.3-0.7
Stereotopy head waving bouts, day 30.70.91.1-1.0-1.00.7
Stereotopy head waving duration, day 30.60.81.0-1.0-1.00.4
Locomotion velocity, session 71.31.41.71.11.1-1.3
Locomotion distance, session 70.00.10.10.20.2-0.2
Stereotopy head waving bouts, day 70.20.30.4-0.5-0.50.6
Stereotopy head waving duration, day 70.40.40.4-0.7-0.70.6
Locomotion velocity, session 80.10.10.10.30.3-0.4
Locomotion distance, session 80.00.00.1-0.1-0.10.2
Degree of sensitization distance0.60.60.8-0.9-0.90.4
Degree of sensitization stereotypy0.40.40.7-0.5-0.50.8
Conditioned locomotion0.10.10.20.40.40.1
Cocaine response after cond. corrected0.20.20.3-0.5-0.50.5
Cocaine response after cond. not corrected1.01.11.3-1.1-1.10.9
Cocaine response before conditioning2.32.83.4-1.9-1.91.2
Saline control response1.01.31.5-1.2-1.21.0
Bone: connectivity density0.00.00.0-0.2-0.2-0.2
Bone: cortical apparent density0.20.20.30.50.5-0.3
Bone: cortical area1.62.53.2-1.8-1.81.0
Bone: cortical porosity0.00.00.0-0.2-0.20.1
Bone: cortical porosity0.20.20.3-0.5-0.50.5
Bone: cortical thickness0.50.81.2-1.1-1.10.4
Bone: cortical thickness0.50.60.7-0.8-0.80.6
Bone: cortical tissue density0.20.30.40.60.6-0.4
Condit. Reinf. active minus inactive responses0.70.81.0-0.8-0.81.0
Condit. Reinf. active-inactive response ratio1.01.01.4-0.9-0.91.2
Condit. Reinf. active responses0.20.30.5-0.5-0.50.7
Condit. Reinf. inactive responses0.40.50.60.70.7-0.8
Incentive salience index mean0.60.70.8-0.8-0.80.9
Condit. Reinf. lever presses0.20.20.3-0.4-0.40.6
Condit. Reinf. active minus inactive responses0.00.10.10.20.2-0.3
Condit. Reinf. active-inactive response ratio0.00.00.00.20.2-0.2
Condit. Reinf. active responses0.10.10.20.30.3-0.5
Condit. Reinf. inactive responses0.10.20.30.40.4-0.5
Condit. Reinf. lever presses0.20.30.3-0.6-0.60.6
Condit. Reinf. lever reinforcers received0.10.10.20.30.3-0.5
Conditioned reinforcement - actives2.33.94.2-2.0-2.01.9
Conditioned reinforcement - inactives1.72.53.4-1.8-1.80.9
Conditioned locomotion1.82.32.7-1.7-1.71.2
Patch foraging indifference point 0 sec0.10.30.4-0.6-0.60.2
Patch foraging indifference point AUC3.34.85.4-2.1-2.12.3
Delay disc. indifference point, 0s delay0.60.60.70.80.8-0.7
Delay disc. indifference point, 16s delay0.40.50.70.80.8-0.2
Delay disc. indifference point, 2s delay1.31.51.91.41.4-0.7
Delay disc. indifference point, 24s delay0.10.10.3-0.2-0.20.5
Delay disc. indifference point, 4s delay0.00.00.1-0.1-0.10.4
Delay disc. indifference point, 8s delay2.12.43.31.81.8-0.9
Indifference point function ln k1.83.15.01.51.5-2.2
Indifference point function log k1.83.15.01.51.5-2.2
Patch foraging total patch changes 0 sec0.20.40.6-0.8-0.80.3
Patch foraging total patch changes 12 sec1.41.92.3-1.3-1.31.5
Patch foraging total patch changes 18 sec1.42.22.3-1.5-1.51.4
Patch foraging total patch changes 24 sec1.32.22.2-1.5-1.51.4
Patch foraging total patch changes 6 sec1.72.72.8-1.7-1.71.5
Patch foraging time to switch 0 sec1.22.42.91.71.7-1.2
Patch foraging water rate 0 sec1.73.74.5-2.1-2.11.4
Patch foraging water rate 12 sec0.10.20.3-0.5-0.5-0.4
Patch foraging water rate 18 sec0.10.20.3-0.6-0.6-0.3
Patch foraging water rate 24 sec0.10.10.20.00.0-0.5
Patch foraging water rate 6 sec1.11.61.7-1.3-1.31.1
Seeking ratio, delayed vs. immediate footshock2.53.13.11.81.8-1.8
Distance traveled before self-admin0.00.00.0-0.0-0.0-0.2
Distance traveled after self-admin0.81.01.01.01.0-1.0
Extensor digitorum longus weight1.87.27.5-2.7-2.72.6
Bone: elastic displacement1.01.11.61.01.0-1.3
Bone: elastic work0.00.10.1-0.2-0.2-0.3
Bone: endosteal estimation0.00.10.10.30.3-0.2
Bone: endosteal perimeter0.00.00.0-0.1-0.10.0
Epididymis fat weight0.20.60.80.60.6-0.9
Delta time in closed arm before/after self-admin0.70.70.90.90.9-0.5
Delta time in open arm before/after self-admin0.40.40.5-0.7-0.70.4
Diff in mean of infusions in LGA sessions2.12.63.31.81.8-1.1
Delay discount exponential model param0.90.91.4-1.2-1.20.3
Extinction: sum of active levers before priming0.00.00.0-0.1-0.1-0.2
Active lever presses in extinction session 61.01.02.0-0.7-0.71.4
Bone: final force0.81.31.6-1.3-1.30.8
Bone: final moment1.01.62.0-1.4-1.40.8
Food consumed during 24 hour testing period3.54.84.92.22.2-2.2
Glucose1.62.52.81.71.7-1.4
Heart weight1.11.82.2-1.5-1.50.9
Delay discount hyperbolic model param0.70.81.1-1.1-1.10.2
Intermittent access intake day 1-15 change0.10.20.2-0.4-0.40.5
Intermittent access intake escalation0.20.40.5-0.6-0.60.7
Intermittent access intake escalation 20.10.10.10.30.3-0.2
Intermitt. access day 1 inactive lever presses0.20.60.6-0.8-0.80.7
Intermitt. access day 15 inactive lever presses0.30.60.7-0.7-0.70.8
Intermitt. access escalation Index0.10.20.30.50.50.2
Intermittent access day 1 total infusions1.93.13.8-1.9-1.91.3
Intermittent access day 15 total infusions0.91.31.5-1.2-1.21.0
Intermittent access terminal intake (last 3 days)0.81.01.2-1.1-1.10.7
Intermittent access total infusions2.02.42.8-1.7-1.71.2
Intermittent access day 1 locomotion0.70.91.3-1.1-1.10.2
Intermittent access day 15 total locomotion0.10.20.4-0.6-0.6-0.1
Intermittent access total locomotion1.51.82.7-1.6-1.60.4
Intermittent access standard deviation0.20.40.60.80.8-0.2
Left kidney weight5.424.928.1-5.3-5.34.3
Right kidney weight4.520.623.2-4.8-4.83.9
Cocaine induced anxiety0.10.20.40.20.2-0.7
Post-drug Anxiety0.10.20.30.30.3-0.6
Baseline Anxiety0.70.80.80.90.9-0.9
Tail length1.03.74.1-1.9-1.92.0
Length with tail0.62.83.0-1.7-1.71.5
Length without tail0.51.51.8-1.3-1.30.9
Times rat made contact with spout0.20.30.40.40.4-0.7
Lifetime Intake2.42.93.3-1.8-1.81.4
Liver weight, left3.76.27.5-2.3-2.32.7
Liver weight, right1.62.83.4-1.6-1.61.9
Locomotor activity2.03.13.2-1.8-1.81.8
Locomotor testing distance1.83.23.5-1.9-1.91.7
Locomotor testing rearing5.310.711.3-3.4-3.43.1
Locomotion in novel chamber1.31.72.61.11.1-1.6
Locomotion in novel chamber post-restriction0.50.80.80.90.9-0.9
Fecal boli incidents, locomotor time 10.20.30.4-0.7-0.70.0
Change in fecal boli incidents, locomotor task1.01.01.31.11.1-0.6
Time >=10cm from walls, locomotor time 10.10.10.1-0.3-0.30.0
Bouts of movement, locomotor time 13.64.15.22.32.3-1.4
Total resting periods, locomotor time 14.44.95.82.42.4-1.8
Rest time, locomotor task time 10.50.60.80.70.7-0.9
Distance moved, locomotor task time 10.91.41.4-1.2-1.21.2
Vertical activity count, locomotor time 10.20.50.5-0.7-0.70.6
Time >=10cm from walls, locomotor time 20.00.10.1-0.3-0.30.2
Bouts of movement, locomotor time 24.16.58.12.82.8-1.9
Total resting periods, locomotor time 23.86.77.92.82.8-2.1
Rest time, locomotor task time 20.81.12.00.80.8-1.4
Distance moved, locomotor task time 21.11.42.0-1.0-1.01.4
Vertical activity count, locomotor time 20.20.30.7-0.3-0.30.9
Light reinforcement 10.51.31.6-1.3-1.30.8
Light reinforcement 21.21.82.0-1.4-1.41.2
Bone: marrow area0.00.00.10.20.2-0.1
Bone: maximum diameter2.75.15.5-2.3-2.32.1
Bone: maximum force0.30.60.7-0.9-0.90.5
Bone: maximum moment0.40.70.9-1.0-1.00.5
Mean time between licks in bursts0.00.00.1-0.1-0.10.3
Mean num. licks in bursts3.55.45.52.32.3-2.3
Cd content in liver0.40.40.80.50.5-0.9
Co content in liver0.91.01.01.01.0-1.0
Cu content in liver0.30.40.4-0.6-0.60.7
Fe content in liver2.53.13.3-1.7-1.71.8
K content in liver0.30.30.6-0.3-0.30.8
Mg content in liver1.21.21.7-1.0-1.01.3
Mn content in liver0.60.60.8-0.7-0.70.9
Na content in liver0.00.00.00.00.00.2
Rb content in liver0.10.10.1-0.2-0.20.2
Se content in liver6.07.110.5-2.3-2.33.2
Sr content in liver0.00.00.0-0.2-0.20.1
Zn content in liver2.83.13.4-1.7-1.71.8
Bone: minimum diameter0.10.20.2-0.4-0.40.3
Time in familiar zone, hab. session 10.20.20.2-0.5-0.5-0.3
Time in novel zone, hab. session 10.80.81.6-0.6-0.61.3
Total zone transitions, hab. session 10.00.00.00.00.0-0.2
Total locomotion distance, hab. session 10.50.70.70.80.8-0.8
Locomotion velocity, hab. session 11.21.71.71.31.3-1.3
Time in familiar zone, hab. session 20.50.50.7-0.9-0.9-0.1
Time in novel zone, hab. session 20.40.40.50.70.70.3
Total zone transitions, hab. session 20.40.60.8-0.9-0.90.3
Total locomotion distance, hab. session 20.50.70.80.80.8-0.9
Locomotion velocity, hab. session 20.30.40.50.60.6-0.7
Novel to familiar place preference ratio0.50.50.7-0.7-0.70.8
Novelty place preference0.40.40.5-0.6-0.60.7
Time in novel zone, NPP test0.40.40.5-0.6-0.60.7
Total zone transitions, NPP test0.20.30.3-0.6-0.60.4
Total locomotion distance, NPP test0.00.00.0-0.1-0.10.1
Locomotion velocity, NPP test0.00.00.0-0.1-0.10.1
Intraocular pressure0.10.20.30.40.4-0.5
Delta distance traveled before/after self-admin0.80.81.01.01.0-0.6
Delta ambulatory time before/after self-admin0.20.20.30.50.5-0.4
Parametrial fat weight0.00.00.10.10.1-0.3
Pavlov. Cond. lever latency0.81.01.21.01.0-1.1
Pavlov. Cond. magazine entry latency0.81.11.4-0.9-0.91.2
Pavlov. Cond. change in total contacts0.10.10.10.40.4-0.1
Pavlov. Cond. index score1.01.31.7-1.0-1.01.3
Pavlov. Cond. latency score0.60.70.9-0.8-0.80.9
Pavlov. Cond. lever contacts0.60.70.9-0.8-0.80.9
Pavlov. Cond. magazine entry number0.60.71.00.80.8-1.0
Pavlov. Cond. intertrial magazine entries0.10.20.50.10.1-0.7
Pavlov. Cond. lever-magazine prob. diff.1.11.31.7-1.1-1.11.3
Pavlov. Cond. response bias1.92.42.9-1.5-1.51.7
Pavlov. Cond. lever latency0.20.20.30.50.5-0.4
Pavlov. Cond. magazine entry latency0.10.10.1-0.3-0.30.2
Pavlov. Cond. change in total contacts0.30.40.60.60.6-0.8
Pavlov. Cond. index score0.00.10.1-0.3-0.30.1
Pavlov. Cond. latency score0.00.00.0-0.1-0.1-0.1
Pavlov. Cond. lever contacts0.30.50.5-0.7-0.70.6
Pavlov. Cond. magazine entry number0.10.10.2-0.3-0.30.4
Pavlov. Cond. intertrial magazine entries0.00.00.00.10.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.5-0.50.2
Pavlov. Cond. response bias0.10.10.1-0.3-0.30.2
Time in closed arm before self-admin0.50.70.9-0.9-0.90.6
Time in closed arm after self-admin1.41.52.01.41.4-0.7
Time in open arm before self-admin0.60.70.91.01.0-0.4
Time in open arm after self-admin0.00.00.0-0.2-0.2-0.1
Bone: periosteal estimation0.20.50.6-0.8-0.80.5
Bone: periosteal perimeter0.50.91.2-1.1-1.10.5
Bone: post-yield work0.20.40.40.60.6-0.6
Progressive ratio test 1 active lever presses2.32.93.7-1.9-1.91.1
Progressive ratio test 1 breakpoint2.12.53.3-1.8-1.81.0
Progressive ratio test 1 inactive lever presses1.92.73.1-1.7-1.71.4
Progressive ratio test 2 active lever presses3.64.24.7-2.2-2.21.8
Progressive ratio test 2 breakpoint3.94.55.1-2.3-2.31.8
Progressive ratio test 2 inactive lever presses1.42.22.5-1.6-1.61.3
Incentive Sensitization - Responses2.23.03.5-1.9-1.91.4
Incentive Sensitization - Breakpoint2.43.13.5-1.9-1.91.5
Sum of active levers in priming session hrs 5-60.50.50.60.80.8-0.6
Progressive ratio0.81.21.61.31.3-0.6
Food seeking constrained by brief footshock2.93.64.61.81.8-2.1
Seeking ratio, punishment vs. effort0.20.30.70.30.3-0.9
Retroperitoneal fat weight0.00.00.00.10.1-0.1
Reaction time number correct2.54.85.8-2.4-2.41.7
Reaction time mean minus median0.61.51.61.31.3-1.1
Reaction time mean minus median AUC0.10.20.20.40.4-0.4
Reaction time num false alarms5.17.17.7-2.6-2.62.8
Reaction time num false alarms AUC3.86.06.4-2.4-2.42.5
Reaction time trials correct on left2.54.85.8-2.4-2.41.7
Reaction time trials on left2.65.06.0-2.4-2.41.7
Reaction time mean1.93.03.31.81.8-1.6
Reaction time mean AUC1.42.22.41.51.5-1.3
Median of all reaction times1.72.42.71.71.7-1.3
Reaction time omissions0.10.20.3-0.5-0.50.2
Reaction time false alarm rate0.50.61.2-0.6-0.61.1
Reaction time premature initiation rate0.60.92.10.50.5-1.5
Reaction time premature initiations0.20.40.4-0.7-0.7-0.6
Std. dev. reaction times0.91.61.71.31.3-1.2
Reaction time trials completed2.65.06.0-2.4-2.41.7
Reaction time trials AUC3.26.27.3-2.7-2.72.0
Run reversals in cocaine runway, females0.60.61.50.30.3-1.2
Run reversals in cocaine runway, males0.20.20.4-0.4-0.40.7
Latency to leave start box in cocaine runway0.40.40.50.60.6-0.7
Latency to leave start box in cocaine runway, F0.00.00.10.00.0-0.3
Latency to leave start box in cocaine runway, M0.10.10.20.40.4-0.2
Std. dev. time between licks in bursts0.20.30.7-0.2-0.20.8
Total sessions with >9 infusions2.93.54.2-2.1-2.11.4
Short access day 1 total inactive lever presses2.73.64.1-2.0-2.01.6
Short access day 10 total inactive lever presses0.41.01.20.90.9-1.1
Short access day 1 total infusions1.72.32.6-1.6-1.61.3
Short access day 10 total infusions4.25.35.6-2.4-2.42.2
Short access total infusions2.53.13.4-1.8-1.81.6
Short access day 1 locomotion3.44.24.8-2.2-2.21.7
Short access day 10 total locomotion0.10.20.5-0.0-0.0-0.7
Short access total locomotion0.81.01.4-1.2-1.20.4
One hour access (0.3 mA shock)0.10.10.1-0.3-0.30.2
Compulsive drug intake0.10.10.1-0.4-0.40.2
One hour access (shock baseline)0.60.91.0-0.9-0.91.0
Social response proportion0.70.71.3-0.7-0.71.2
Social responses1.31.72.3-1.2-1.21.5
Social time2.12.83.82.02.0-0.9
Soleus weight0.61.61.8-1.4-1.41.1
Bone: stiffness0.71.21.4-1.1-1.11.2
Tibialis anterior weight4.114.014.8-3.8-3.83.6
Time to tail flick, vehicle, before self-admin0.60.70.9-1.0-1.00.4
Time to tail flick, vehicle, after self-admin0.50.60.80.90.9-0.5
Time to tail flick, test, before self-admin1.71.72.21.21.2-1.5
Time to tail flick, test, after self-admin0.00.00.00.00.0-0.2
Delta time to tail flick, vehicle, before/after SA0.30.30.40.60.6-0.3
Delta time to tail flick, test, before/after SA1.71.72.0-1.4-1.41.0
Tibia length0.61.82.3-1.2-1.21.5
Ambulatory time before self-admin0.10.10.10.20.2-0.4
Ambulatory time after self-admin1.01.21.31.11.1-1.1
Bone: tissue strength0.30.30.30.50.5-0.5
Total heroin consumption0.10.10.2-0.3-0.30.4
Bone: trabecular number0.10.10.20.20.2-0.4
Bone: trabecular spacing0.00.00.0-0.2-0.20.2
Bone: trabecular thickness0.40.50.6-0.7-0.70.8
Bone: trabecular tissue density0.20.30.3-0.5-0.50.6
Water consumed over 24 hours0.70.91.10.90.9-1.1
Number of responses in last shaping day2.42.62.8-1.6-1.61.7