Mdga1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Mdga1 0.06 0.06 1.9e-07 0.06 0.06 0.06 0.06 2.1e-07 8.2e-07 1.0e-06 6.4e-07
2 Eye alternative TSS XM_039098719.1 0.92 0.06 4.2e-03 0.12 0.09 0.06 0.1 7.7e-03 1.5e-02 4.1e-02 1.5e-02
3 BLA gene expression Mdga1 0.1 0.12 1.1e-03 0.04 0.06 0.05 0.06 3.3e-03 5.4e-04 1.5e-03 4.1e-04
4 Brain gene expression Mdga1 0.04 0.04 1.8e-03 0.03 0.02 0.01 0.03 8.8e-04 7.8e-03 7.1e-02 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.31.41.21.2-1.1-1.1
Area under the delay curve1.71.83.3-1.8-1.01.21.1
BMI with tail2.99.410.8-3.3-2.93.12.9
BMI without tail1.94.04.7-2.2-2.12.01.7
Body weight6.627.832.3-5.7-5.55.04.8
Weight adjusted by age4.24.76.7-1.5-2.62.32.2
Bone surface0.00.00.0-0.20.00.1-0.0
Bone volume0.00.00.0-0.1-0.00.2-0.0
Breakpoint value in progressive ratio session0.50.50.70.60.6-0.8-0.8
Number of licking bursts0.50.60.90.90.8-0.6-0.6
Context. condit. distance diff. score0.30.30.50.50.4-0.7-0.7
Locomotion velocity, session 11.82.02.90.71.3-1.7-1.6
Locomotion distance, session 13.34.24.52.12.1-2.1-2.0
Locomotion velocity, session 20.20.20.40.30.6-0.5-0.3
Locomotion distance, session 20.70.91.21.10.9-0.9-0.9
Locomotion velocity, session 30.00.00.1-0.10.0-0.30.1
Locomotion distance, session 30.70.80.90.90.9-1.0-0.7
Stereotopy head waving bouts, day 31.21.41.6-1.3-1.31.11.1
Stereotopy head waving duration, day 30.40.50.6-0.6-0.70.60.8
Locomotion velocity, session 70.20.20.50.70.5-0.0-0.2
Locomotion distance, session 70.91.22.51.61.1-0.8-0.7
Stereotopy head waving bouts, day 70.10.10.3-0.5-0.10.20.4
Stereotopy head waving duration, day 70.60.70.8-0.9-0.60.90.9
Locomotion velocity, session 80.00.10.1-0.1-0.1-0.3-0.3
Locomotion distance, session 80.60.81.11.00.7-0.9-0.9
Degree of sensitization distance0.20.20.50.0-0.50.70.5
Degree of sensitization stereotypy0.20.20.40.30.6-0.5-0.2
Conditioned locomotion1.92.23.3-1.4-1.81.51.2
Cocaine response after cond. corrected1.61.82.2-1.4-1.51.41.0
Cocaine response after cond. not corrected1.31.52.2-1.5-1.31.20.8
Cocaine response before conditioning0.20.20.40.10.5-0.6-0.4
Saline control response0.50.61.1-0.9-1.00.50.5
Bone: connectivity density0.60.91.10.91.0-0.9-1.0
Bone: cortical apparent density0.00.10.20.00.4-0.1-0.1
Bone: cortical area0.91.31.9-1.4-1.11.01.0
Bone: cortical porosity0.00.00.1-0.20.00.10.1
Bone: cortical porosity0.00.00.1-0.2-0.10.20.3
Bone: cortical thickness0.00.00.1-0.30.1-0.1-0.0
Bone: cortical thickness0.00.00.10.2-0.30.00.0
Bone: cortical tissue density0.00.00.1-0.10.3-0.0-0.1
Condit. Reinf. active minus inactive responses1.31.51.80.91.2-1.3-1.3
Condit. Reinf. active-inactive response ratio0.10.10.20.00.4-0.4-0.5
Condit. Reinf. active responses0.91.01.40.71.0-1.2-1.2
Condit. Reinf. inactive responses1.01.21.50.91.0-1.2-1.2
Incentive salience index mean0.50.60.80.50.8-0.9-0.9
Condit. Reinf. lever presses0.00.00.0-0.10.1-0.2-0.2
Condit. Reinf. active minus inactive responses2.02.53.61.01.4-1.9-1.9
Condit. Reinf. active-inactive response ratio0.80.81.50.50.6-1.2-1.1
Condit. Reinf. active responses1.62.33.41.11.4-1.8-1.6
Condit. Reinf. inactive responses0.10.10.10.20.3-0.3-0.3
Condit. Reinf. lever presses5.06.88.22.62.4-2.9-2.6
Condit. Reinf. lever reinforcers received2.63.75.11.61.8-2.3-2.0
Conditioned reinforcement - actives0.10.10.3-0.3-0.50.30.3
Conditioned reinforcement - inactives0.50.60.70.90.6-0.7-0.8
Conditioned locomotion0.50.60.9-0.4-0.90.90.8
Patch foraging indifference point 0 sec0.40.60.9-0.0-0.90.90.7
Patch foraging indifference point AUC0.20.20.30.50.4-0.6-0.3
Delay disc. indifference point, 0s delay1.51.72.2-1.1-1.31.31.5
Delay disc. indifference point, 16s delay0.40.41.0-1.00.2-0.4-0.6
Delay disc. indifference point, 2s delay0.20.20.4-0.1-0.20.60.6
Delay disc. indifference point, 24s delay2.92.86.2-2.5-1.41.41.1
Delay disc. indifference point, 4s delay2.12.22.7-1.6-1.41.51.3
Delay disc. indifference point, 8s delay2.02.02.9-1.7-1.31.31.3
Indifference point function ln k0.10.10.20.4-0.00.40.1
Indifference point function log k0.10.10.20.4-0.00.40.1
Patch foraging total patch changes 0 sec0.40.61.00.1-0.91.00.8
Patch foraging total patch changes 12 sec0.10.20.50.70.0-0.3-0.1
Patch foraging total patch changes 18 sec0.20.20.3-0.4-0.50.50.6
Patch foraging total patch changes 24 sec0.30.30.70.80.7-0.3-0.2
Patch foraging total patch changes 6 sec0.00.10.20.1-0.40.10.2
Patch foraging time to switch 0 sec0.81.32.6-1.6-1.10.70.8
Patch foraging water rate 0 sec0.20.40.91.0-0.10.70.4
Patch foraging water rate 12 sec0.00.10.30.5-0.10.0-0.1
Patch foraging water rate 18 sec0.60.81.01.01.0-0.7-0.9
Patch foraging water rate 24 sec0.20.20.70.80.1-0.1-0.4
Patch foraging water rate 6 sec0.10.10.20.4-0.30.30.0
Seeking ratio, delayed vs. immediate footshock0.80.91.2-0.61.0-1.1-1.0
Distance traveled before self-admin0.80.81.1-0.5-0.91.11.1
Distance traveled after self-admin0.10.10.1-0.3-0.10.30.2
Extensor digitorum longus weight0.21.01.31.10.7-1.0-1.0
Bone: elastic displacement0.10.20.3-0.20.5-0.5-0.3
Bone: elastic work0.10.10.4-0.6-0.20.20.4
Bone: endosteal estimation3.16.87.3-2.6-2.72.62.6
Bone: endosteal perimeter2.24.55.0-2.2-2.22.12.0
Epididymis fat weight1.74.06.0-2.3-2.41.51.6
Delta time in closed arm before/after self-admin2.82.74.2-1.4-2.01.61.5
Delta time in open arm before/after self-admin1.11.11.21.01.1-0.9-1.1
Diff in mean of infusions in LGA sessions0.60.71.01.00.8-0.8-0.7
Delay discount exponential model param1.41.42.81.70.9-1.1-1.0
Extinction: sum of active levers before priming0.40.40.60.7-0.2-0.6-0.8
Active lever presses in extinction session 60.20.20.4-0.4-0.0-0.5-0.6
Bone: final force4.67.58.7-2.9-2.72.62.7
Bone: final moment3.96.37.4-2.7-2.42.42.5
Food consumed during 24 hour testing period0.60.81.2-1.1-1.00.80.6
Glucose0.40.60.9-0.8-0.60.70.9
Heart weight1.21.62.21.41.5-1.0-1.1
Delay discount hyperbolic model param1.01.12.11.40.8-1.0-0.9
Intermittent access intake day 1-15 change0.10.10.1-0.30.2-0.2-0.2
Intermittent access intake escalation0.10.10.4-0.6-0.0-0.1-0.1
Intermittent access intake escalation 20.90.91.10.81.0-1.0-1.0
Intermitt. access day 1 inactive lever presses0.20.30.30.6-0.50.50.4
Intermitt. access day 15 inactive lever presses0.20.20.8-0.9-0.30.10.2
Intermitt. access escalation Index0.20.20.30.00.6-0.4-0.4
Intermittent access day 1 total infusions0.40.51.10.51.0-0.7-0.5
Intermittent access day 15 total infusions0.10.10.3-0.00.5-0.3-0.1
Intermittent access terminal intake (last 3 days)0.10.10.2-0.10.00.20.4
Intermittent access total infusions0.20.20.60.40.8-0.3-0.1
Intermittent access day 1 locomotion0.10.10.2-0.1-0.10.50.4
Intermittent access day 15 total locomotion1.41.53.0-1.7-1.21.00.9
Intermittent access total locomotion0.30.41.0-1.0-0.30.50.4
Intermittent access standard deviation0.60.60.8-0.4-0.70.90.9
Left kidney weight2.46.88.4-2.9-2.32.62.6
Right kidney weight3.18.69.7-3.1-2.73.02.9
Cocaine induced anxiety0.30.40.70.40.6-0.5-0.8
Post-drug Anxiety0.80.81.60.50.7-1.0-1.3
Baseline Anxiety0.00.00.10.2-0.30.10.1
Tail length1.03.04.1-1.6-2.01.71.5
Length with tail1.86.68.4-2.7-2.92.42.2
Length without tail1.32.93.7-1.9-1.91.51.5
Times rat made contact with spout4.75.45.82.42.3-2.2-2.4
Lifetime Intake0.00.10.10.10.20.20.3
Liver weight, left2.84.65.7-2.1-2.42.11.9
Liver weight, right2.03.34.5-1.3-1.82.11.9
Locomotor activity0.30.40.8-0.4-0.90.60.6
Locomotor testing distance0.40.61.4-0.3-1.20.80.7
Locomotor testing rearing1.42.22.6-1.4-1.61.41.5
Locomotion in novel chamber0.10.10.10.00.20.30.3
Locomotion in novel chamber post-restriction1.92.32.5-1.6-1.41.51.6
Fecal boli incidents, locomotor time 10.00.00.0-0.20.10.0-0.0
Change in fecal boli incidents, locomotor task3.12.94.0-0.4-2.01.92.0
Time >=10cm from walls, locomotor time 13.13.13.9-1.3-1.91.82.0
Bouts of movement, locomotor time 10.80.91.30.70.9-1.0-1.2
Total resting periods, locomotor time 10.60.71.10.50.7-0.9-1.1
Rest time, locomotor task time 10.10.10.2-0.1-0.50.40.3
Distance moved, locomotor task time 10.10.10.2-0.4-0.1-0.10.1
Vertical activity count, locomotor time 10.50.50.9-1.0-0.70.60.6
Time >=10cm from walls, locomotor time 212.513.216.1-2.7-3.83.94.0
Bouts of movement, locomotor time 20.20.20.5-0.10.1-0.5-0.7
Total resting periods, locomotor time 20.40.40.80.30.3-0.7-0.9
Rest time, locomotor task time 20.00.00.1-0.0-0.30.10.0
Distance moved, locomotor task time 21.72.02.4-1.4-1.41.31.6
Vertical activity count, locomotor time 21.41.51.8-1.0-1.21.31.3
Light reinforcement 12.24.04.8-1.8-2.22.12.0
Light reinforcement 22.33.13.7-1.9-1.51.91.7
Bone: marrow area3.37.17.6-2.6-2.82.62.6
Bone: maximum diameter1.01.82.3-1.5-1.31.31.3
Bone: maximum force1.83.13.6-1.9-1.81.71.7
Bone: maximum moment1.32.22.7-1.7-1.51.41.4
Mean time between licks in bursts0.60.81.50.61.2-0.8-0.8
Mean num. licks in bursts0.60.71.00.70.7-0.9-1.0
Cd content in liver0.50.60.9-0.8-0.50.70.9
Co content in liver2.32.73.5-1.5-1.91.61.6
Cu content in liver2.22.74.62.11.6-1.4-1.3
Fe content in liver3.03.64.1-2.0-1.91.81.8
K content in liver0.80.81.51.20.8-0.7-0.8
Mg content in liver1.41.42.21.51.1-1.0-1.0
Mn content in liver0.00.00.10.2-0.00.10.1
Na content in liver0.30.30.60.70.7-0.4-0.5
Rb content in liver0.20.20.2-0.4-0.40.50.5
Se content in liver1.72.02.91.71.4-1.3-1.2
Sr content in liver0.00.00.00.0-0.00.00.0
Zn content in liver4.04.55.4-1.6-2.32.12.3
Bone: minimum diameter2.44.55.2-2.3-2.12.02.1
Time in familiar zone, hab. session 10.30.30.5-0.10.5-0.7-0.7
Time in novel zone, hab. session 11.00.91.3-0.5-1.01.11.1
Total zone transitions, hab. session 13.24.55.02.22.1-2.1-2.0
Total locomotion distance, hab. session 12.12.93.41.71.7-1.8-1.6
Locomotion velocity, hab. session 11.82.63.01.71.6-1.7-1.5
Time in familiar zone, hab. session 20.80.81.11.01.0-0.7-0.8
Time in novel zone, hab. session 20.40.40.7-0.8-0.80.40.5
Total zone transitions, hab. session 20.20.30.91.00.4-0.3-0.2
Total locomotion distance, hab. session 21.82.43.82.01.5-1.4-1.3
Locomotion velocity, hab. session 22.12.84.72.21.6-1.5-1.3
Novel to familiar place preference ratio0.60.61.1-0.7-1.00.60.7
Novelty place preference0.50.51.0-0.6-1.00.50.6
Time in novel zone, NPP test0.40.40.8-0.7-0.90.30.5
Total zone transitions, NPP test1.01.52.81.71.1-1.0-0.9
Total locomotion distance, NPP test0.81.12.21.51.0-0.7-0.8
Locomotion velocity, NPP test1.01.53.31.81.1-0.8-0.8
Intraocular pressure0.60.81.5-1.2-1.00.70.7
Delta distance traveled before/after self-admin0.50.50.80.40.7-0.7-0.9
Delta ambulatory time before/after self-admin0.60.71.00.50.9-0.9-1.0
Parametrial fat weight0.50.91.7-1.3-1.10.60.6
Pavlov. Cond. lever latency0.10.10.2-0.5-0.30.20.1
Pavlov. Cond. magazine entry latency0.30.30.50.70.6-0.5-0.5
Pavlov. Cond. change in total contacts0.20.20.6-0.7-0.40.20.2
Pavlov. Cond. index score0.00.00.00.1-0.00.0-0.0
Pavlov. Cond. latency score0.10.10.10.0-0.30.30.3
Pavlov. Cond. lever contacts0.00.10.10.30.2-0.2-0.2
Pavlov. Cond. magazine entry number0.60.80.9-0.9-0.90.80.9
Pavlov. Cond. intertrial magazine entries0.40.40.60.40.8-0.8-0.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.1-0.00.00.0
Pavlov. Cond. response bias1.11.31.60.91.2-1.2-1.3
Pavlov. Cond. lever latency2.93.94.7-2.0-1.82.21.9
Pavlov. Cond. magazine entry latency0.10.10.1-0.30.2-0.3-0.2
Pavlov. Cond. change in total contacts2.43.43.81.81.7-1.9-1.9
Pavlov. Cond. index score1.41.82.51.21.3-1.6-1.4
Pavlov. Cond. latency score1.01.21.70.91.0-1.3-1.1
Pavlov. Cond. lever contacts2.83.84.62.01.7-2.1-1.9
Pavlov. Cond. magazine entry number0.10.10.1-0.1-0.40.30.2
Pavlov. Cond. intertrial magazine entries0.30.51.21.10.4-0.5-0.4
Pavlov. Cond. lever-magazine prob. diff.1.01.21.80.91.0-1.3-1.1
Pavlov. Cond. response bias2.12.93.71.61.5-1.9-1.7
Time in closed arm before self-admin0.20.20.50.7-0.00.30.6
Time in closed arm after self-admin0.60.60.9-0.5-1.00.70.9
Time in open arm before self-admin1.41.52.20.61.5-1.4-1.3
Time in open arm after self-admin3.84.25.71.72.4-1.9-2.1
Bone: periosteal estimation2.65.46.0-2.5-2.42.22.2
Bone: periosteal perimeter1.32.23.0-1.7-1.41.31.4
Bone: post-yield work0.10.20.2-0.4-0.50.50.4
Progressive ratio test 1 active lever presses0.00.00.10.20.1-0.2-0.1
Progressive ratio test 1 breakpoint0.00.00.10.2-0.10.00.1
Progressive ratio test 1 inactive lever presses0.20.20.4-0.7-0.50.2-0.0
Progressive ratio test 2 active lever presses0.40.50.70.50.5-0.8-0.8
Progressive ratio test 2 breakpoint0.40.40.60.50.6-0.8-0.7
Progressive ratio test 2 inactive lever presses1.21.41.51.21.1-1.2-1.2
Incentive Sensitization - Responses2.52.53.01.31.6-1.7-1.6
Incentive Sensitization - Breakpoint1.91.92.41.01.4-1.6-1.4
Sum of active levers in priming session hrs 5-60.60.60.80.50.7-0.9-0.9
Progressive ratio1.31.53.4-1.8-1.00.81.0
Food seeking constrained by brief footshock0.00.00.1-0.20.2-0.20.0
Seeking ratio, punishment vs. effort0.40.51.51.20.4-0.3-0.4
Retroperitoneal fat weight1.44.77.1-2.1-2.72.11.8
Reaction time number correct0.00.00.1-0.2-0.10.0-0.3
Reaction time mean minus median0.40.50.8-0.20.7-0.9-0.8
Reaction time mean minus median AUC0.30.30.4-0.60.6-0.6-0.5
Reaction time num false alarms0.30.41.21.10.6-0.3-0.2
Reaction time num false alarms AUC0.71.02.51.61.0-0.6-0.4
Reaction time trials correct on left0.00.00.1-0.2-0.10.0-0.3
Reaction time trials on left0.00.00.1-0.2-0.1-0.0-0.4
Reaction time mean0.10.10.3-0.6-0.2-0.10.0
Reaction time mean AUC0.20.20.7-0.8-0.30.10.2
Median of all reaction times0.20.20.5-0.7-0.50.30.4
Reaction time omissions0.30.50.90.00.7-0.9-0.7
Reaction time false alarm rate0.60.82.21.50.9-0.5-0.2
Reaction time premature initiation rate0.00.10.10.3-0.1-0.3-0.3
Reaction time premature initiations0.00.10.1-0.0-0.3-0.2-0.3
Std. dev. reaction times0.20.30.5-0.30.4-0.7-0.6
Reaction time trials completed0.00.00.1-0.2-0.1-0.0-0.4
Reaction time trials AUC0.00.00.1-0.2-0.0-0.0-0.3
Run reversals in cocaine runway, females0.10.10.1-0.30.0-0.2-0.3
Run reversals in cocaine runway, males1.11.01.70.11.1-1.0-1.3
Latency to leave start box in cocaine runway0.10.20.50.3-0.7-0.1-0.2
Latency to leave start box in cocaine runway, F0.10.10.40.1-0.6-0.2-0.2
Latency to leave start box in cocaine runway, M0.10.10.30.1-0.50.30.4
Std. dev. time between licks in bursts1.31.51.6-1.3-1.21.21.2
Total sessions with >9 infusions0.10.10.2-0.0-0.40.30.3
Short access day 1 total inactive lever presses0.10.10.30.30.5-0.3-0.3
Short access day 10 total inactive lever presses0.00.00.00.10.1-0.1-0.2
Short access day 1 total infusions0.80.81.61.31.0-0.6-0.6
Short access day 10 total infusions0.10.10.20.40.40.10.2
Short access total infusions0.10.10.10.2-0.00.40.4
Short access day 1 locomotion0.00.00.00.2-0.00.20.1
Short access day 10 total locomotion0.60.61.81.3-0.40.60.5
Short access total locomotion0.60.61.00.3-0.61.00.9
One hour access (0.3 mA shock)1.82.12.41.41.6-1.5-1.3
Compulsive drug intake0.90.91.91.40.8-0.7-0.6
One hour access (shock baseline)0.30.40.6-0.10.8-0.7-0.6
Social response proportion1.31.43.1-0.2-0.71.41.8
Social responses0.20.30.9-0.1-0.20.50.9
Social time0.50.60.80.70.9-0.9-0.7
Soleus weight0.82.42.8-1.4-1.71.61.6
Bone: stiffness1.32.02.1-1.3-1.51.51.4
Tibialis anterior weight0.82.63.01.61.4-1.7-1.7
Time to tail flick, vehicle, before self-admin0.70.72.0-1.4-0.70.50.4
Time to tail flick, vehicle, after self-admin0.10.10.20.0-0.00.30.5
Time to tail flick, test, before self-admin0.20.20.30.30.5-0.5-0.4
Time to tail flick, test, after self-admin0.60.61.00.11.0-0.9-0.8
Delta time to tail flick, vehicle, before/after SA0.20.20.50.70.5-0.3-0.0
Delta time to tail flick, test, before/after SA0.80.81.1-1.1-0.70.90.8
Tibia length2.05.66.2-2.5-2.22.32.4
Ambulatory time before self-admin0.20.20.2-0.3-0.40.40.4
Ambulatory time after self-admin0.30.40.60.20.8-0.5-0.8
Bone: tissue strength0.00.00.10.20.10.10.2
Total heroin consumption1.51.82.11.31.4-1.4-1.2
Bone: trabecular number1.11.61.91.41.2-1.3-1.3
Bone: trabecular spacing2.63.44.0-1.5-1.91.92.0
Bone: trabecular thickness0.00.00.1-0.3-0.10.1-0.0
Bone: trabecular tissue density0.10.10.30.30.6-0.2-0.0
Water consumed over 24 hours0.91.11.70.71.0-1.0-1.3
Number of responses in last shaping day0.40.40.70.9-0.60.50.6