Majin

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Majin 0.03 0.02 5.1e-03 0.01 0.01 -0 0 2.8e-02 6.6e-02 9.6e-01 1.9e-01
2 pVTA gene expression Majin 0.13 0.08 1.2e-04 0.05 0.07 0.06 0.06 2.8e-03 5.5e-04 1.1e-03 1.1e-03
3 BLA gene expression Majin 0.12 0.07 1.9e-04 0.04 0.06 0.05 0.05 5.6e-03 2.5e-04 1.1e-03 1.7e-03
4 Brain gene expression Majin 0.05 0.04 8.7e-03 0.01 0.01 0 0.01 8.5e-02 1.5e-02 2.3e-01 3.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.60.91.7-0.71.21.30.4
Area under the delay curve0.30.31.00.40.2-0.2-1.0
BMI with tail3.09.917.9-2.94.23.41.2
BMI without tail1.42.86.4-1.62.51.50.1
Body weight3.615.122.2-4.24.73.62.7
Weight adjusted by age2.62.93.6-1.71.61.71.9
Bone surface5.910.414.0-2.83.03.73.2
Bone volume2.74.78.0-1.51.82.82.3
Breakpoint value in progressive ratio session3.64.04.5-2.01.82.12.0
Number of licking bursts0.40.40.5-0.70.50.70.7
Context. condit. distance diff. score2.02.43.01.6-1.3-1.5-1.7
Locomotion velocity, session 10.10.20.40.00.2-0.6-0.4
Locomotion distance, session 10.40.51.4-0.61.20.4-0.3
Locomotion velocity, session 22.52.94.8-1.82.21.61.0
Locomotion distance, session 20.50.71.7-0.81.30.4-0.3
Locomotion velocity, session 30.20.30.70.50.1-0.4-0.8
Locomotion distance, session 30.10.10.10.2-0.1-0.3-0.4
Stereotopy head waving bouts, day 30.60.71.50.9-0.2-0.8-1.2
Stereotopy head waving duration, day 30.50.71.01.0-0.6-0.7-0.9
Locomotion velocity, session 70.40.51.20.8-0.2-0.2-1.1
Locomotion distance, session 70.50.61.90.20.1-0.7-1.4
Stereotopy head waving bouts, day 70.20.20.40.5-0.30.60.4
Stereotopy head waving duration, day 71.51.83.2-1.01.21.81.3
Locomotion velocity, session 80.50.61.3-1.11.10.00.3
Locomotion distance, session 80.10.20.40.50.0-0.2-0.7
Degree of sensitization distance0.10.10.4-0.00.3-0.2-0.7
Degree of sensitization stereotypy1.21.32.5-0.60.61.61.3
Conditioned locomotion1.41.62.4-1.61.50.91.0
Cocaine response after cond. corrected2.22.53.31.5-1.1-1.8-1.8
Cocaine response after cond. not corrected1.61.82.41.3-0.9-1.5-1.5
Cocaine response before conditioning1.01.31.7-1.00.81.31.3
Saline control response3.34.36.8-2.62.51.51.4
Bone: connectivity density2.53.95.1-1.92.32.21.4
Bone: cortical apparent density0.10.10.4-0.70.30.1-0.1
Bone: cortical area1.11.62.6-1.01.01.41.6
Bone: cortical porosity0.10.10.2-0.30.40.4-0.0
Bone: cortical porosity0.50.60.9-0.90.90.70.4
Bone: cortical thickness1.62.64.5-2.11.81.01.3
Bone: cortical thickness0.30.30.5-0.70.6-0.6-0.3
Bone: cortical tissue density0.10.20.6-0.80.30.1-0.1
Condit. Reinf. active minus inactive responses0.10.10.2-0.50.50.2-0.2
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.0-0.0-0.2
Condit. Reinf. active responses0.10.10.1-0.30.30.4-0.0
Condit. Reinf. inactive responses0.00.10.20.10.10.40.1
Incentive salience index mean0.30.30.7-0.60.80.5-0.1
Condit. Reinf. lever presses0.50.71.0-0.70.91.00.7
Condit. Reinf. active minus inactive responses0.10.20.20.4-0.40.50.4
Condit. Reinf. active-inactive response ratio0.50.50.70.9-0.70.60.6
Condit. Reinf. active responses0.10.10.4-0.10.10.60.3
Condit. Reinf. inactive responses0.20.30.4-0.60.60.0-0.6
Condit. Reinf. lever presses3.24.35.8-1.81.62.42.4
Condit. Reinf. lever reinforcers received0.30.51.0-0.50.41.00.7
Conditioned reinforcement - actives0.60.61.30.6-0.70.51.1
Conditioned reinforcement - inactives4.34.89.82.7-3.1-1.3-0.7
Conditioned locomotion6.88.214.13.3-3.8-2.4-1.4
Patch foraging indifference point 0 sec0.00.00.10.1-0.3-0.1-0.2
Patch foraging indifference point AUC4.34.95.6-2.31.92.32.4
Delay disc. indifference point, 0s delay0.80.92.30.80.0-0.8-1.5
Delay disc. indifference point, 16s delay0.70.70.91.0-0.9-0.4-0.9
Delay disc. indifference point, 2s delay0.00.10.10.4-0.00.0-0.3
Delay disc. indifference point, 24s delay0.50.51.00.4-0.2-0.9-1.0
Delay disc. indifference point, 4s delay0.80.82.10.60.1-0.9-1.5
Delay disc. indifference point, 8s delay0.50.51.40.30.1-0.7-1.2
Indifference point function ln k10.514.616.63.8-3.3-4.1-4.1
Indifference point function log k10.514.616.63.8-3.3-4.1-4.1
Patch foraging total patch changes 0 sec0.10.10.20.0-0.2-0.4-0.3
Patch foraging total patch changes 12 sec4.65.98.0-2.82.52.42.0
Patch foraging total patch changes 18 sec0.91.21.8-1.01.01.31.1
Patch foraging total patch changes 24 sec2.43.04.0-2.01.61.41.8
Patch foraging total patch changes 6 sec0.71.01.9-1.41.30.70.4
Patch foraging time to switch 0 sec2.53.96.1-1.72.12.51.4
Patch foraging water rate 0 sec4.26.89.32.6-3.0-2.9-1.7
Patch foraging water rate 12 sec10.616.222.03.9-4.0-4.7-3.4
Patch foraging water rate 18 sec4.35.88.32.3-2.1-2.9-2.4
Patch foraging water rate 24 sec4.76.68.42.7-2.5-2.9-2.0
Patch foraging water rate 6 sec5.68.112.52.6-2.6-3.5-2.6
Seeking ratio, delayed vs. immediate footshock0.20.31.00.0-0.2-0.3-1.0
Distance traveled before self-admin1.21.32.0-0.80.81.41.4
Distance traveled after self-admin0.40.40.7-0.50.20.80.8
Extensor digitorum longus weight7.027.636.7-5.96.14.84.0
Bone: elastic displacement2.32.65.01.2-1.3-2.2-1.5
Bone: elastic work0.30.40.7-0.90.8-0.5-0.2
Bone: endosteal estimation0.30.51.81.3-0.50.1-0.3
Bone: endosteal perimeter0.40.82.31.5-0.80.60.3
Epididymis fat weight1.74.07.42.7-2.2-1.4-1.4
Delta time in closed arm before/after self-admin1.01.01.9-0.10.3-1.3-1.4
Delta time in open arm before/after self-admin0.90.81.9-0.2-0.11.21.4
Diff in mean of infusions in LGA sessions0.40.40.7-0.80.50.50.8
Delay discount exponential model param0.20.30.8-0.3-0.20.20.9
Extinction: sum of active levers before priming4.84.85.8-2.42.42.31.6
Active lever presses in extinction session 64.14.07.1-1.61.42.02.7
Bone: final force3.55.66.1-2.42.52.42.2
Bone: final moment3.15.05.4-2.22.32.32.1
Food consumed during 24 hour testing period0.30.31.0-0.2-0.20.51.0
Glucose1.21.93.41.8-1.3-0.8-1.4
Heart weight3.85.45.92.4-2.1-2.3-2.4
Delay discount hyperbolic model param0.20.20.7-0.3-0.20.20.8
Intermittent access intake day 1-15 change0.70.71.50.9-1.2-0.10.7
Intermittent access intake escalation0.50.51.20.8-1.1-0.10.5
Intermittent access intake escalation 20.40.40.80.4-0.80.20.9
Intermitt. access day 1 inactive lever presses1.92.03.31.7-1.8-1.0-1.0
Intermitt. access day 15 inactive lever presses1.71.94.11.8-2.0-0.6-0.2
Intermitt. access escalation Index4.23.76.41.8-1.4-1.8-2.5
Intermittent access day 1 total infusions3.33.97.32.7-2.0-1.1-1.7
Intermittent access day 15 total infusions5.46.011.23.3-3.1-1.4-1.1
Intermittent access terminal intake (last 3 days)3.23.57.52.7-2.4-0.6-0.4
Intermittent access total infusions2.62.96.32.5-2.1-0.6-0.8
Intermittent access day 1 locomotion3.03.14.42.1-1.4-1.3-2.1
Intermittent access day 15 total locomotion3.23.46.32.5-2.4-0.9-0.8
Intermittent access total locomotion3.43.88.12.8-2.3-0.7-1.2
Intermittent access standard deviation1.01.02.11.3-1.5-0.50.1
Left kidney weight0.41.01.91.4-1.4-0.4-0.4
Right kidney weight0.20.61.30.5-0.80.51.1
Cocaine induced anxiety0.30.30.8-0.00.00.60.9
Post-drug Anxiety2.32.64.9-1.31.11.62.2
Baseline Anxiety1.81.93.3-1.81.50.91.1
Tail length0.41.12.1-1.51.10.21.0
Length with tail1.76.29.0-3.02.61.82.4
Length without tail2.04.46.1-2.52.11.72.1
Times rat made contact with spout0.20.30.4-0.70.70.1-0.3
Lifetime Intake2.42.75.52.3-1.8-0.8-1.2
Liver weight, left0.00.00.10.3-0.1-0.1-0.1
Liver weight, right0.10.20.40.30.2-0.7-0.5
Locomotor activity3.04.77.81.8-1.9-2.8-2.0
Locomotor testing distance4.67.612.72.3-2.2-3.6-2.7
Locomotor testing rearing3.65.68.32.1-1.9-2.9-2.4
Locomotion in novel chamber3.03.76.82.6-2.6-1.0-0.4
Locomotion in novel chamber post-restriction2.32.84.22.0-2.0-1.3-1.1
Fecal boli incidents, locomotor time 11.11.22.6-0.00.11.51.6
Change in fecal boli incidents, locomotor task0.90.82.0-0.10.4-1.1-1.4
Time >=10cm from walls, locomotor time 10.40.40.80.8-0.30.90.5
Bouts of movement, locomotor time 11.11.21.8-1.40.71.11.1
Total resting periods, locomotor time 10.91.01.4-1.20.51.21.1
Rest time, locomotor task time 11.11.21.81.3-1.4-1.0-0.4
Distance moved, locomotor task time 10.20.20.3-0.30.60.4-0.2
Vertical activity count, locomotor time 11.31.41.61.2-1.3-1.1-1.1
Time >=10cm from walls, locomotor time 20.50.51.0-0.10.11.01.0
Bouts of movement, locomotor time 20.30.30.7-0.90.40.50.2
Total resting periods, locomotor time 20.10.20.4-0.60.30.40.0
Rest time, locomotor task time 22.02.33.71.9-1.6-1.3-1.2
Distance moved, locomotor task time 20.91.11.7-1.31.00.90.9
Vertical activity count, locomotor time 20.30.41.2-0.1-0.4-1.1-0.4
Light reinforcement 10.20.30.50.4-0.7-0.7-0.4
Light reinforcement 20.71.01.61.2-1.30.20.8
Bone: marrow area0.30.62.01.4-0.50.0-0.5
Bone: maximum diameter1.01.94.4-0.50.61.62.1
Bone: maximum force4.57.810.1-2.62.93.22.5
Bone: maximum moment3.96.78.6-2.32.72.92.3
Mean time between licks in bursts0.50.71.0-1.00.9-0.7-0.6
Mean num. licks in bursts0.50.61.00.6-0.4-0.9-1.0
Cd content in liver0.91.02.21.2-1.5-0.30.3
Co content in liver3.13.76.11.3-1.7-2.5-2.0
Cu content in liver0.20.20.4-0.50.50.60.1
Fe content in liver0.40.51.1-0.30.50.71.0
K content in liver1.81.83.3-1.31.81.40.6
Mg content in liver0.30.30.5-0.20.70.6-0.5
Mn content in liver3.64.05.2-1.81.72.22.3
Na content in liver1.61.72.6-1.21.11.31.6
Rb content in liver1.62.03.01.5-1.2-1.2-1.7
Se content in liver0.81.02.20.1-0.11.41.5
Sr content in liver3.33.04.0-1.91.41.52.0
Zn content in liver1.11.21.4-1.21.21.20.8
Bone: minimum diameter0.30.61.51.2-0.50.2-0.7
Time in familiar zone, hab. session 10.10.10.20.5-0.3-0.2-0.4
Time in novel zone, hab. session 10.60.61.40.4-0.5-1.2-0.8
Total zone transitions, hab. session 10.50.70.9-1.00.90.90.5
Total locomotion distance, hab. session 10.20.20.40.7-0.3-0.2-0.6
Locomotion velocity, hab. session 10.00.00.10.20.10.2-0.3
Time in familiar zone, hab. session 20.40.41.20.00.1-1.1-0.8
Time in novel zone, hab. session 20.20.20.6-0.20.20.80.3
Total zone transitions, hab. session 21.31.63.3-1.21.81.30.2
Total locomotion distance, hab. session 20.20.30.70.10.60.1-0.9
Locomotion velocity, hab. session 20.10.20.50.30.40.2-0.7
Novel to familiar place preference ratio2.52.64.4-1.21.02.11.9
Novelty place preference1.41.42.8-0.70.61.71.4
Time in novel zone, NPP test1.01.02.0-0.60.51.41.2
Total zone transitions, NPP test2.23.14.4-1.82.11.81.2
Total locomotion distance, NPP test0.10.10.3-0.20.60.2-0.4
Locomotion velocity, NPP test0.10.10.3-0.30.50.4-0.3
Intraocular pressure0.81.12.51.1-1.6-0.10.9
Delta distance traveled before/after self-admin0.30.30.60.1-0.3-0.8-0.7
Delta ambulatory time before/after self-admin0.30.40.8-0.1-0.2-0.9-0.8
Parametrial fat weight1.22.34.32.1-1.5-0.7-1.5
Pavlov. Cond. lever latency0.40.50.70.6-0.8-0.8-0.5
Pavlov. Cond. magazine entry latency0.40.51.1-0.40.71.10.3
Pavlov. Cond. change in total contacts0.50.51.4-0.20.21.20.8
Pavlov. Cond. index score0.30.40.7-0.40.50.90.6
Pavlov. Cond. latency score0.20.20.4-0.30.50.60.3
Pavlov. Cond. lever contacts0.00.00.1-0.10.30.2-0.1
Pavlov. Cond. magazine entry number0.60.71.20.6-0.4-1.1-1.1
Pavlov. Cond. intertrial magazine entries0.50.61.40.7-1.2-0.5-0.2
Pavlov. Cond. lever-magazine prob. diff.0.60.71.2-0.60.71.10.8
Pavlov. Cond. response bias0.20.20.5-0.30.20.70.6
Pavlov. Cond. lever latency1.11.42.30.8-0.8-1.5-1.5
Pavlov. Cond. magazine entry latency3.54.14.7-2.12.22.11.6
Pavlov. Cond. change in total contacts3.44.78.0-1.61.42.82.5
Pavlov. Cond. index score3.54.46.3-1.91.82.52.2
Pavlov. Cond. latency score3.03.75.4-1.61.62.32.0
Pavlov. Cond. lever contacts1.01.42.8-0.90.71.31.7
Pavlov. Cond. magazine entry number6.98.410.03.0-2.8-3.2-2.6
Pavlov. Cond. intertrial magazine entries0.91.21.81.3-1.2-1.0-0.7
Pavlov. Cond. lever-magazine prob. diff.3.95.06.8-2.02.02.62.2
Pavlov. Cond. response bias2.63.54.5-1.71.52.12.1
Time in closed arm before self-admin0.50.51.1-0.20.21.01.0
Time in closed arm after self-admin0.30.30.80.0-0.0-0.7-0.9
Time in open arm before self-admin2.93.16.40.8-0.6-2.2-2.5
Time in open arm after self-admin0.30.40.50.5-0.7-0.7-0.4
Bone: periosteal estimation0.30.71.30.20.31.11.1
Bone: periosteal perimeter0.60.91.7-0.30.51.31.3
Bone: post-yield work2.43.38.7-0.71.42.91.3
Progressive ratio test 1 active lever presses2.42.54.12.0-2.0-1.1-0.9
Progressive ratio test 1 breakpoint2.22.33.71.9-1.9-1.1-0.8
Progressive ratio test 1 inactive lever presses1.51.71.91.4-1.3-1.2-1.3
Progressive ratio test 2 active lever presses2.93.15.82.4-2.4-0.9-0.5
Progressive ratio test 2 breakpoint4.14.78.32.7-2.9-1.5-0.9
Progressive ratio test 2 inactive lever presses6.17.112.23.5-3.5-1.5-1.3
Incentive Sensitization - Responses0.30.30.60.7-0.80.20.2
Incentive Sensitization - Breakpoint0.40.41.00.9-1.00.00.1
Sum of active levers in priming session hrs 5-64.24.19.7-1.40.62.13.1
Progressive ratio2.93.34.9-1.52.22.21.1
Food seeking constrained by brief footshock0.20.30.3-0.50.4-0.5-0.5
Seeking ratio, punishment vs. effort3.44.27.21.4-1.9-2.7-2.0
Retroperitoneal fat weight4.113.620.74.5-4.1-2.9-2.9
Reaction time number correct0.20.30.6-0.60.50.20.8
Reaction time mean minus median4.66.08.3-2.22.02.92.6
Reaction time mean minus median AUC2.33.04.0-1.61.41.92.0
Reaction time num false alarms1.41.93.50.4-0.5-1.9-1.9
Reaction time num false alarms AUC0.70.91.9-0.20.2-1.3-1.4
Reaction time trials correct on left0.20.30.6-0.60.50.20.8
Reaction time trials on left0.30.40.7-0.70.60.30.8
Reaction time mean0.30.50.9-0.4-0.00.90.9
Reaction time mean AUC0.30.51.0-0.3-0.11.00.8
Median of all reaction times0.10.10.2-0.0-0.40.50.3
Reaction time omissions1.01.31.9-1.41.11.21.0
Reaction time false alarm rate1.01.43.10.4-0.4-1.5-1.7
Reaction time premature initiation rate1.41.93.7-1.91.90.20.2
Reaction time premature initiations2.13.05.9-2.42.30.50.9
Std. dev. reaction times1.42.03.0-1.20.91.71.7
Reaction time trials completed0.30.40.7-0.70.60.30.8
Reaction time trials AUC0.10.20.3-0.50.50.10.5
Run reversals in cocaine runway, females1.00.91.9-0.51.3-0.2-1.4
Run reversals in cocaine runway, males0.40.40.80.5-0.8-0.90.0
Latency to leave start box in cocaine runway0.10.10.10.20.10.3-0.3
Latency to leave start box in cocaine runway, F0.10.10.20.20.10.5-0.1
Latency to leave start box in cocaine runway, M0.00.00.0-0.00.20.0-0.0
Std. dev. time between licks in bursts0.81.02.40.1-0.1-1.5-1.2
Total sessions with >9 infusions1.61.82.41.6-1.1-1.2-1.5
Short access day 1 total inactive lever presses3.84.24.92.2-2.2-1.8-2.0
Short access day 10 total inactive lever presses5.05.56.62.1-2.1-2.5-2.6
Short access day 1 total infusions2.32.43.51.9-1.4-1.0-1.8
Short access day 10 total infusions0.91.02.21.5-0.7-0.2-1.2
Short access total infusions1.01.11.81.3-0.7-0.7-1.3
Short access day 1 locomotion2.12.33.41.8-1.2-1.2-1.8
Short access day 10 total locomotion1.51.72.81.7-1.0-0.8-1.5
Short access total locomotion1.41.42.51.3-0.8-0.9-1.6
One hour access (0.3 mA shock)7.79.014.83.8-3.7-2.2-1.6
Compulsive drug intake1.31.33.0-1.71.5-0.1-0.2
One hour access (shock baseline)5.86.812.93.6-3.5-1.1-0.5
Social response proportion1.21.31.5-1.11.01.21.2
Social responses0.20.20.3-0.60.50.30.6
Social time0.20.30.4-0.60.60.10.6
Soleus weight3.610.513.83.7-3.4-3.0-2.8
Bone: stiffness3.96.28.9-2.22.43.02.3
Tibialis anterior weight10.335.342.6-6.56.25.35.6
Time to tail flick, vehicle, before self-admin0.80.91.4-0.51.01.20.8
Time to tail flick, vehicle, after self-admin1.21.33.6-1.01.90.80.0
Time to tail flick, test, before self-admin1.01.02.40.9-0.3-0.9-1.6
Time to tail flick, test, after self-admin0.00.00.1-0.10.10.00.2
Delta time to tail flick, vehicle, before/after SA0.30.30.9-0.60.90.1-0.3
Delta time to tail flick, test, before/after SA1.61.43.3-1.20.40.91.8
Tibia length2.57.114.0-1.81.43.03.7
Ambulatory time before self-admin1.51.63.0-0.70.51.61.7
Ambulatory time after self-admin0.20.20.40.1-0.30.70.5
Bone: tissue strength0.20.20.3-0.20.10.60.5
Total heroin consumption5.36.28.1-2.82.72.42.0
Bone: trabecular number1.01.63.2-0.81.01.81.2
Bone: trabecular spacing0.81.01.80.5-0.5-1.3-1.3
Bone: trabecular thickness0.30.40.70.8-0.7-0.1-0.5
Bone: trabecular tissue density2.84.05.92.3-2.4-1.7-1.3
Water consumed over 24 hours0.30.40.9-1.00.70.40.4
Number of responses in last shaping day1.92.02.51.4-1.4-1.6-1.3