Lrrc36

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Lrrc36 0.26 0.24 7.4e-03 0.02 0.03 0.01 0.03 2.0e-02 6.6e-03 8.9e-02 1.6e-02
2 Brain gene expression Lrrc36 0.1 0.08 1.9e-07 0.06 0.07 0.06 0.06 1.9e-06 8.8e-07 2.1e-06 3.5e-06
3 Brain alternative polyA XM_063278125.1 0.03 0.03 1.0e-02 0.01 0.01 0 0.01 3.1e-02 1.6e-02 1.1e-01 2.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.20.2-0.40.4
Area under the delay curve0.00.00.1-0.30.1-0.1
BMI with tail0.00.10.1-0.0-0.40.4
BMI without tail0.00.10.3-0.60.1-0.0
Body weight0.31.41.5-1.2-1.21.2
Weight adjusted by age0.00.00.1-0.3-0.10.1
Bone surface1.12.02.5-1.0-1.61.6
Bone volume0.91.62.1-0.9-1.51.4
Breakpoint value in progressive ratio session2.42.94.22.11.5-1.5
Number of licking bursts0.50.80.9-0.7-1.01.0
Context. condit. distance diff. score0.10.10.10.40.2-0.2
Locomotion velocity, session 10.10.10.1-0.4-0.20.2
Locomotion distance, session 10.10.10.1-0.10.3-0.3
Locomotion velocity, session 20.50.50.80.30.9-0.9
Locomotion distance, session 20.10.10.2-0.10.4-0.4
Locomotion velocity, session 30.30.40.40.60.6-0.6
Locomotion distance, session 30.00.00.1-0.10.2-0.2
Stereotopy head waving bouts, day 30.10.20.3-0.6-0.30.3
Stereotopy head waving duration, day 30.50.60.7-0.7-0.80.8
Locomotion velocity, session 70.10.10.40.60.0-0.1
Locomotion distance, session 70.10.10.20.50.2-0.2
Stereotopy head waving bouts, day 70.10.10.20.2-0.40.4
Stereotopy head waving duration, day 70.30.40.6-0.2-0.80.8
Locomotion velocity, session 80.20.30.80.90.1-0.1
Locomotion distance, session 80.40.60.60.70.8-0.8
Degree of sensitization distance0.00.00.00.1-0.10.1
Degree of sensitization stereotypy0.20.20.3-0.0-0.60.6
Conditioned locomotion2.02.32.4-1.5-1.61.6
Cocaine response after cond. corrected0.30.30.4-0.3-0.60.6
Cocaine response after cond. not corrected0.00.00.00.1-0.10.1
Cocaine response before conditioning1.11.31.60.81.3-1.3
Saline control response4.96.57.3-2.7-2.52.5
Bone: connectivity density0.10.20.50.70.2-0.2
Bone: cortical apparent density1.21.72.81.71.1-1.1
Bone: cortical area0.30.40.6-0.5-0.70.7
Bone: cortical porosity0.10.20.20.10.5-0.5
Bone: cortical porosity0.10.10.20.10.5-0.5
Bone: cortical thickness0.10.20.20.2-0.50.5
Bone: cortical thickness0.00.00.0-0.1-0.10.1
Bone: cortical tissue density1.31.72.81.71.1-1.1
Condit. Reinf. active minus inactive responses4.24.74.82.12.2-2.2
Condit. Reinf. active-inactive response ratio4.04.34.32.12.1-2.1
Condit. Reinf. active responses2.73.43.81.61.9-1.9
Condit. Reinf. inactive responses0.10.20.20.30.5-0.5
Incentive salience index mean2.22.72.71.61.6-1.6
Condit. Reinf. lever presses0.10.20.30.60.4-0.4
Condit. Reinf. active minus inactive responses0.71.01.0-1.0-1.01.0
Condit. Reinf. active-inactive response ratio0.60.60.7-0.7-0.90.9
Condit. Reinf. active responses0.40.60.7-0.9-0.70.7
Condit. Reinf. inactive responses0.10.10.2-0.00.4-0.4
Condit. Reinf. lever presses2.33.13.21.81.8-1.8
Condit. Reinf. lever reinforcers received0.10.10.1-0.3-0.30.3
Conditioned reinforcement - actives0.50.91.30.11.2-1.1
Conditioned reinforcement - inactives0.20.30.70.8-0.20.2
Conditioned locomotion0.40.50.8-0.2-0.90.9
Patch foraging indifference point 0 sec3.15.86.6-2.6-2.32.3
Patch foraging indifference point AUC1.92.82.8-1.7-1.71.7
Delay disc. indifference point, 0s delay0.60.60.70.70.9-0.9
Delay disc. indifference point, 16s delay0.60.71.9-1.4-0.20.3
Delay disc. indifference point, 2s delay0.10.20.20.4-0.40.4
Delay disc. indifference point, 24s delay0.00.00.1-0.40.00.0
Delay disc. indifference point, 4s delay0.40.50.80.90.5-0.5
Delay disc. indifference point, 8s delay0.00.10.1-0.40.1-0.1
Indifference point function ln k0.30.50.60.70.8-0.7
Indifference point function log k0.30.50.60.70.8-0.7
Patch foraging total patch changes 0 sec3.15.86.6-2.6-2.32.3
Patch foraging total patch changes 12 sec3.24.24.7-2.2-2.02.0
Patch foraging total patch changes 18 sec2.84.34.8-2.2-2.02.0
Patch foraging total patch changes 24 sec0.20.30.4-0.2-0.60.6
Patch foraging total patch changes 6 sec2.03.03.3-1.5-1.81.8
Patch foraging time to switch 0 sec0.81.61.71.31.2-1.3
Patch foraging water rate 0 sec1.53.33.9-2.0-1.71.7
Patch foraging water rate 12 sec0.10.20.2-0.3-0.40.4
Patch foraging water rate 18 sec0.00.00.00.0-0.20.2
Patch foraging water rate 24 sec0.10.10.3-0.5-0.10.1
Patch foraging water rate 6 sec0.50.81.0-0.5-1.01.0
Seeking ratio, delayed vs. immediate footshock2.42.93.1-1.7-1.71.8
Distance traveled before self-admin1.01.42.51.6-0.90.9
Distance traveled after self-admin0.10.10.10.3-0.30.3
Extensor digitorum longus weight0.62.52.81.51.6-1.7
Bone: elastic displacement1.71.92.0-1.4-1.41.4
Bone: elastic work0.60.70.8-0.7-0.90.9
Bone: endosteal estimation0.10.30.7-0.8-0.30.3
Bone: endosteal perimeter0.20.51.0-1.0-0.50.5
Epididymis fat weight2.06.97.0-2.6-2.62.6
Delta time in closed arm before/after self-admin0.40.40.9-1.0-0.30.3
Delta time in open arm before/after self-admin1.01.03.01.70.2-0.2
Diff in mean of infusions in LGA sessions0.81.01.91.40.7-0.7
Delay discount exponential model param0.00.00.00.2-0.20.2
Extinction: sum of active levers before priming0.70.70.90.70.9-0.9
Active lever presses in extinction session 60.10.10.3-0.6-0.10.1
Bone: final force0.81.31.31.11.1-1.1
Bone: final moment0.30.50.60.70.7-0.7
Food consumed during 24 hour testing period0.70.92.3-1.5-0.40.5
Glucose1.82.82.91.71.7-1.6
Heart weight0.00.10.10.40.1-0.1
Delay discount hyperbolic model param0.10.10.1-0.1-0.30.3
Intermittent access intake day 1-15 change0.91.82.70.61.6-1.6
Intermittent access intake escalation1.02.13.00.71.7-1.7
Intermittent access intake escalation 20.70.91.30.11.2-1.1
Intermitt. access day 1 inactive lever presses0.00.10.2-0.40.3-0.2
Intermitt. access day 15 inactive lever presses0.30.61.61.30.4-0.4
Intermitt. access escalation Index0.40.50.8-0.9-0.60.6
Intermittent access day 1 total infusions0.20.30.9-1.00.2-0.2
Intermittent access day 15 total infusions1.21.82.80.01.7-1.6
Intermittent access terminal intake (last 3 days)2.12.84.20.42.0-2.0
Intermittent access total infusions1.61.82.80.01.7-1.6
Intermittent access day 1 locomotion1.62.13.4-1.8-1.21.2
Intermittent access day 15 total locomotion0.20.40.6-0.8-0.50.5
Intermittent access total locomotion0.10.10.1-0.4-0.20.2
Intermittent access standard deviation0.10.20.2-0.4-0.50.5
Left kidney weight1.88.210.43.22.6-2.7
Right kidney weight1.88.110.33.22.6-2.7
Cocaine induced anxiety2.13.03.8-1.2-2.01.9
Post-drug Anxiety0.40.40.6-0.4-0.70.7
Baseline Anxiety1.31.52.30.51.5-1.4
Tail length0.10.41.2-1.1-0.00.1
Length with tail0.20.71.0-1.0-0.80.8
Length without tail0.51.51.6-1.1-1.31.3
Times rat made contact with spout2.02.23.3-1.8-1.31.3
Lifetime Intake1.31.52.4-0.11.5-1.5
Liver weight, left0.20.30.4-0.3-0.70.6
Liver weight, right0.61.01.4-1.2-0.90.9
Locomotor activity2.43.74.6-1.4-2.22.1
Locomotor testing distance2.13.74.1-1.7-2.02.0
Locomotor testing rearing0.20.40.60.1-0.70.7
Locomotion in novel chamber2.02.62.9-1.5-1.71.7
Locomotion in novel chamber post-restriction2.33.85.5-2.3-1.71.7
Fecal boli incidents, locomotor time 12.13.06.0-2.5-1.21.2
Change in fecal boli incidents, locomotor task0.80.81.01.00.8-0.8
Time >=10cm from walls, locomotor time 11.31.43.3-1.8-0.60.7
Bouts of movement, locomotor time 10.10.10.3-0.5-0.30.2
Total resting periods, locomotor time 10.00.00.1-0.30.0-0.0
Rest time, locomotor task time 10.10.10.10.10.4-0.4
Distance moved, locomotor task time 10.10.10.2-0.2-0.40.4
Vertical activity count, locomotor time 10.71.62.3-1.5-1.11.1
Time >=10cm from walls, locomotor time 20.20.30.30.50.6-0.6
Bouts of movement, locomotor time 20.60.90.90.90.9-1.0
Total resting periods, locomotor time 20.71.21.21.11.1-1.1
Rest time, locomotor task time 20.40.50.7-0.10.8-0.8
Distance moved, locomotor task time 20.50.60.80.4-0.90.9
Vertical activity count, locomotor time 20.81.11.5-0.6-1.21.2
Light reinforcement 12.05.05.8-1.8-2.42.4
Light reinforcement 22.23.43.7-1.7-1.91.9
Bone: marrow area0.10.20.6-0.8-0.20.3
Bone: maximum diameter0.50.91.1-1.1-0.90.9
Bone: maximum force0.30.50.80.90.6-0.6
Bone: maximum moment0.10.10.20.50.2-0.2
Mean time between licks in bursts0.00.00.0-0.0-0.00.1
Mean num. licks in bursts0.10.10.3-0.60.0-0.0
Cd content in liver0.20.20.60.80.3-0.3
Co content in liver0.00.00.00.00.2-0.2
Cu content in liver0.70.81.10.61.0-1.0
Fe content in liver2.22.72.8-1.6-1.71.6
K content in liver0.10.10.2-0.10.4-0.4
Mg content in liver0.60.61.1-1.0-0.60.6
Mn content in liver0.50.60.6-0.7-0.80.8
Na content in liver0.00.00.0-0.10.1-0.1
Rb content in liver0.20.20.30.10.5-0.5
Se content in liver0.00.00.10.20.2-0.2
Sr content in liver1.10.91.0-1.0-0.91.0
Zn content in liver1.61.72.11.01.5-1.4
Bone: minimum diameter0.10.20.2-0.5-0.50.5
Time in familiar zone, hab. session 10.10.10.2-0.2-0.40.4
Time in novel zone, hab. session 10.10.10.10.40.4-0.4
Total zone transitions, hab. session 10.91.31.6-1.3-1.11.1
Total locomotion distance, hab. session 11.21.71.8-1.3-1.31.3
Locomotion velocity, hab. session 11.62.22.6-1.6-1.41.4
Time in familiar zone, hab. session 20.60.60.8-0.5-0.90.9
Time in novel zone, hab. session 24.24.24.52.02.1-2.1
Total zone transitions, hab. session 22.32.93.0-1.7-1.71.7
Total locomotion distance, hab. session 21.41.92.3-1.5-1.31.3
Locomotion velocity, hab. session 21.31.82.1-1.5-1.31.3
Novel to familiar place preference ratio2.72.93.92.01.6-1.6
Novelty place preference4.14.45.72.41.9-1.9
Time in novel zone, NPP test3.84.05.22.31.8-1.9
Total zone transitions, NPP test1.92.83.0-1.7-1.61.6
Total locomotion distance, NPP test1.21.61.8-1.4-1.21.2
Locomotion velocity, NPP test1.01.41.6-1.3-1.21.1
Intraocular pressure0.71.01.91.40.7-0.8
Delta distance traveled before/after self-admin0.40.40.60.40.8-0.7
Delta ambulatory time before/after self-admin0.50.71.00.11.0-1.0
Parametrial fat weight6.816.016.8-3.8-4.14.1
Pavlov. Cond. lever latency0.00.10.1-0.4-0.10.1
Pavlov. Cond. magazine entry latency0.30.40.60.30.8-0.8
Pavlov. Cond. change in total contacts0.90.91.21.10.9-0.9
Pavlov. Cond. index score0.30.30.40.50.6-0.6
Pavlov. Cond. latency score0.20.20.30.40.5-0.5
Pavlov. Cond. lever contacts0.50.60.70.90.7-0.7
Pavlov. Cond. magazine entry number0.40.50.7-0.4-0.90.9
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.6-0.40.4
Pavlov. Cond. lever-magazine prob. diff.0.30.40.40.60.6-0.6
Pavlov. Cond. response bias0.20.20.30.30.5-0.5
Pavlov. Cond. lever latency1.21.61.7-1.2-1.31.3
Pavlov. Cond. magazine entry latency3.44.14.22.02.0-2.0
Pavlov. Cond. change in total contacts1.82.93.31.81.6-1.6
Pavlov. Cond. index score3.24.34.52.02.1-2.1
Pavlov. Cond. latency score3.34.44.52.12.1-2.1
Pavlov. Cond. lever contacts1.41.92.11.21.5-1.5
Pavlov. Cond. magazine entry number5.66.97.4-2.7-2.62.6
Pavlov. Cond. intertrial magazine entries4.97.37.7-2.8-2.72.7
Pavlov. Cond. lever-magazine prob. diff.3.64.95.12.12.2-2.3
Pavlov. Cond. response bias2.93.94.01.92.0-2.0
Time in closed arm before self-admin2.93.73.9-1.8-2.02.0
Time in closed arm after self-admin2.72.93.5-1.4-1.91.9
Time in open arm before self-admin1.31.41.70.91.3-1.3
Time in open arm after self-admin1.01.12.01.40.8-0.8
Bone: periosteal estimation0.30.50.6-0.8-0.70.7
Bone: periosteal perimeter0.71.31.3-1.1-1.11.1
Bone: post-yield work0.40.60.7-0.6-0.80.9
Progressive ratio test 1 active lever presses2.02.53.80.41.9-1.9
Progressive ratio test 1 breakpoint1.82.23.30.41.8-1.8
Progressive ratio test 1 inactive lever presses0.10.20.3-0.50.3-0.3
Progressive ratio test 2 active lever presses1.51.82.7-0.51.6-1.6
Progressive ratio test 2 breakpoint1.61.82.8-0.41.7-1.6
Progressive ratio test 2 inactive lever presses0.10.10.20.10.4-0.4
Incentive Sensitization - Responses0.60.80.8-0.90.9-0.9
Incentive Sensitization - Breakpoint0.70.91.0-0.91.0-1.0
Sum of active levers in priming session hrs 5-60.70.71.41.20.5-0.6
Progressive ratio0.71.13.41.8-0.10.0
Food seeking constrained by brief footshock1.72.12.81.71.3-1.4
Seeking ratio, punishment vs. effort0.40.61.0-0.21.0-0.9
Retroperitoneal fat weight6.226.428.3-4.8-5.35.3
Reaction time number correct0.81.62.00.81.4-1.4
Reaction time mean minus median1.02.54.92.21.1-1.2
Reaction time mean minus median AUC0.82.14.42.10.9-1.0
Reaction time num false alarms0.10.20.20.40.4-0.4
Reaction time num false alarms AUC0.00.10.2-0.4-0.00.0
Reaction time trials correct on left0.81.62.00.81.4-1.4
Reaction time trials on left0.91.62.10.81.5-1.4
Reaction time mean1.11.75.22.30.1-0.2
Reaction time mean AUC1.32.16.02.50.4-0.5
Median of all reaction times0.81.23.51.9-0.20.1
Reaction time omissions0.30.41.2-1.1-0.30.3
Reaction time false alarm rate0.40.50.5-0.7-0.70.7
Reaction time premature initiation rate1.42.02.61.61.3-1.3
Reaction time premature initiations2.34.04.12.02.0-2.0
Std. dev. reaction times0.81.53.92.00.4-0.5
Reaction time trials completed0.91.62.10.81.5-1.4
Reaction time trials AUC0.91.72.20.81.5-1.5
Run reversals in cocaine runway, females2.22.23.2-1.8-1.31.3
Run reversals in cocaine runway, males1.41.43.1-1.8-0.70.7
Latency to leave start box in cocaine runway0.50.61.11.10.5-0.5
Latency to leave start box in cocaine runway, F1.01.21.50.81.2-1.2
Latency to leave start box in cocaine runway, M0.90.81.00.8-1.00.9
Std. dev. time between licks in bursts1.82.52.7-1.5-1.61.6
Total sessions with >9 infusions1.01.21.8-0.21.3-1.3
Short access day 1 total inactive lever presses0.00.00.0-0.1-0.10.1
Short access day 10 total inactive lever presses0.10.30.3-0.5-0.50.5
Short access day 1 total infusions0.50.71.4-1.20.6-0.6
Short access day 10 total infusions0.40.50.7-0.90.6-0.6
Short access total infusions1.21.52.3-0.31.5-1.5
Short access day 1 locomotion0.30.30.7-0.80.4-0.4
Short access day 10 total locomotion1.22.32.6-1.3-1.61.6
Short access total locomotion0.30.30.4-0.6-0.60.6
One hour access (0.3 mA shock)0.80.91.3-0.51.1-1.1
Compulsive drug intake0.10.10.2-0.1-0.40.4
One hour access (shock baseline)0.71.11.5-0.51.2-1.2
Social response proportion0.50.50.8-0.30.9-0.8
Social responses0.10.10.4-0.60.1-0.1
Social time0.10.20.4-0.60.2-0.2
Soleus weight0.20.50.6-0.4-0.80.8
Bone: stiffness3.25.25.52.42.2-2.3
Tibialis anterior weight0.20.50.60.60.8-0.8
Time to tail flick, vehicle, before self-admin0.40.40.5-0.30.7-0.7
Time to tail flick, vehicle, after self-admin1.62.24.4-2.1-1.01.0
Time to tail flick, test, before self-admin4.44.56.8-2.6-1.81.8
Time to tail flick, test, after self-admin0.50.61.6-1.3-0.20.3
Delta time to tail flick, vehicle, before/after SA1.71.63.0-1.7-1.01.0
Delta time to tail flick, test, before/after SA0.91.01.20.71.1-1.1
Tibia length0.00.00.10.20.1-0.1
Ambulatory time before self-admin0.81.11.60.6-1.31.2
Ambulatory time after self-admin0.20.20.40.1-0.60.6
Bone: tissue strength0.30.30.30.50.5-0.5
Total heroin consumption1.11.31.41.21.1-1.2
Bone: trabecular number0.20.40.6-0.1-0.80.7
Bone: trabecular spacing0.20.20.6-0.8-0.20.2
Bone: trabecular thickness0.60.81.41.20.7-0.7
Bone: trabecular tissue density0.71.11.21.11.0-1.0
Water consumed over 24 hours0.40.61.1-1.0-0.60.6
Number of responses in last shaping day1.71.94.22.00.8-0.9