Leng8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL alternative polyA XM_008758948.3 0.04 0.03 2.1e-03 0.01 0.02 0.02 0.01 1.6e-02 6.9e-03 1.6e-03 3.5e-02
2 PL alternative polyA XM_006228220.3 0.04 0.03 2.3e-03 0.01 0.01 0.03 0.01 1.5e-02 8.0e-03 5.8e-04 2.6e-02
3 PL alternative polyA NM_001037790.3 0.03 0.03 2.2e-03 0.01 0.01 0.02 0.01 1.2e-02 1.3e-02 1.1e-03 5.3e-02
4 PL alternative polyA NM_001037790.3 0.04 0.03 1.9e-03 0.01 0.01 0.03 0.01 1.1e-02 1.6e-02 4.7e-04 4.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.2-0.40.00.4
Area under the delay curve0.10.10.3-0.40.40.5-0.2
BMI with tail0.30.91.8-0.41.30.7-1.0
BMI without tail0.10.30.60.20.8-0.1-0.7
Body weight1.04.06.22.51.5-2.2-1.7
Weight adjusted by age1.01.12.4-0.3-1.60.01.3
Bone surface0.81.52.81.4-0.9-1.70.5
Bone volume0.61.12.11.2-0.7-1.50.4
Breakpoint value in progressive ratio session1.01.12.1-1.4-0.11.40.4
Number of licking bursts0.10.10.1-0.3-0.30.30.3
Context. condit. distance diff. score0.20.20.5-0.7-0.30.50.3
Locomotion velocity, session 17.58.29.0-3.0-3.02.43.0
Locomotion distance, session 12.73.47.2-1.0-2.70.42.3
Locomotion velocity, session 22.12.42.8-1.7-1.61.41.6
Locomotion distance, session 21.21.73.8-0.4-2.0-0.01.6
Locomotion velocity, session 30.30.30.5-0.7-0.40.60.4
Locomotion distance, session 30.80.81.4-0.8-1.20.51.1
Stereotopy head waving bouts, day 30.20.30.50.30.7-0.2-0.6
Stereotopy head waving duration, day 30.30.40.60.50.8-0.4-0.7
Locomotion velocity, session 70.40.40.6-0.6-0.80.40.7
Locomotion distance, session 71.31.61.8-1.3-1.31.11.3
Stereotopy head waving bouts, day 70.91.01.41.20.7-1.1-0.8
Stereotopy head waving duration, day 70.70.81.21.10.6-1.0-0.7
Locomotion velocity, session 81.61.92.3-1.5-1.41.21.4
Locomotion distance, session 80.91.32.0-1.1-1.40.71.3
Degree of sensitization distance0.00.00.0-0.1-0.10.10.1
Degree of sensitization stereotypy0.70.81.01.00.8-0.9-0.8
Conditioned locomotion0.40.50.7-0.7-0.80.50.8
Cocaine response after cond. corrected1.92.14.40.92.1-0.3-1.8
Cocaine response after cond. not corrected1.11.31.81.31.1-1.1-1.0
Cocaine response before conditioning1.92.34.40.8-2.1-1.31.5
Saline control response1.51.92.8-1.3-1.70.91.6
Bone: connectivity density0.10.20.2-0.5-0.40.40.4
Bone: cortical apparent density0.40.50.8-0.9-0.50.80.6
Bone: cortical area0.30.51.00.90.0-1.0-0.2
Bone: cortical porosity0.40.40.9-0.20.90.4-0.7
Bone: cortical porosity0.70.71.50.51.2-0.2-1.1
Bone: cortical thickness0.30.51.0-1.00.11.00.1
Bone: cortical thickness0.50.50.8-0.7-0.90.40.8
Bone: cortical tissue density0.30.40.7-0.8-0.50.70.5
Condit. Reinf. active minus inactive responses0.00.10.1-0.10.30.2-0.3
Condit. Reinf. active-inactive response ratio0.40.51.0-0.21.00.5-0.8
Condit. Reinf. active responses0.00.00.00.1-0.2-0.20.1
Condit. Reinf. inactive responses0.91.12.40.4-1.5-0.71.2
Incentive salience index mean0.00.00.10.0-0.2-0.10.2
Condit. Reinf. lever presses0.20.30.60.2-0.8-0.40.6
Condit. Reinf. active minus inactive responses1.31.72.80.9-1.7-1.31.2
Condit. Reinf. active-inactive response ratio2.12.24.41.9-0.8-2.10.3
Condit. Reinf. active responses1.52.14.90.2-2.2-0.71.8
Condit. Reinf. inactive responses0.81.01.4-0.9-1.20.61.1
Condit. Reinf. lever presses1.21.72.61.60.9-1.5-1.0
Condit. Reinf. lever reinforcers received1.72.45.50.2-2.4-0.71.9
Conditioned reinforcement - actives2.42.43.21.81.4-1.6-1.5
Conditioned reinforcement - inactives1.21.42.21.1-1.2-1.50.7
Conditioned locomotion1.72.13.21.81.0-1.6-1.2
Patch foraging indifference point 0 sec0.81.22.0-1.4-0.71.30.8
Patch foraging indifference point AUC0.20.20.3-0.30.50.4-0.4
Delay disc. indifference point, 0s delay2.12.32.6-1.6-1.51.41.5
Delay disc. indifference point, 16s delay3.23.35.11.52.3-1.1-2.1
Delay disc. indifference point, 2s delay0.30.40.7-0.8-0.20.80.3
Delay disc. indifference point, 24s delay1.21.12.10.71.5-0.4-1.3
Delay disc. indifference point, 4s delay0.30.30.40.60.4-0.6-0.4
Delay disc. indifference point, 8s delay0.20.20.2-0.5-0.30.50.3
Indifference point function ln k1.72.44.50.9-2.1-1.41.5
Indifference point function log k1.72.44.50.9-2.1-1.41.5
Patch foraging total patch changes 0 sec0.71.11.7-1.3-0.61.20.8
Patch foraging total patch changes 12 sec0.20.30.7-0.10.80.3-0.7
Patch foraging total patch changes 18 sec0.30.40.7-0.80.20.90.0
Patch foraging total patch changes 24 sec0.60.71.20.71.1-0.4-1.0
Patch foraging total patch changes 6 sec0.20.30.5-0.50.60.7-0.4
Patch foraging time to switch 0 sec8.112.522.02.64.7-1.7-4.3
Patch foraging water rate 0 sec2.74.36.7-1.6-2.61.22.5
Patch foraging water rate 12 sec4.06.211.9-1.5-3.40.93.1
Patch foraging water rate 18 sec3.24.37.4-1.5-2.71.02.6
Patch foraging water rate 24 sec1.82.64.7-1.1-2.20.62.0
Patch foraging water rate 6 sec1.62.44.40.9-2.1-1.31.6
Seeking ratio, delayed vs. immediate footshock2.42.73.0-1.7-1.71.41.7
Distance traveled before self-admin6.87.312.2-2.1-3.51.43.3
Distance traveled after self-admin5.66.27.5-2.5-2.72.02.7
Extensor digitorum longus weight0.41.62.71.60.8-1.5-0.9
Bone: elastic displacement0.80.91.4-1.2-0.61.10.7
Bone: elastic work0.40.51.0-0.3-1.00.00.8
Bone: endosteal estimation1.63.57.22.6-0.2-2.7-0.3
Bone: endosteal perimeter1.02.04.31.9-0.4-2.1-0.1
Epididymis fat weight0.92.14.11.02.0-0.5-1.7
Delta time in closed arm before/after self-admin0.00.00.1-0.20.20.2-0.2
Delta time in open arm before/after self-admin2.01.93.8-0.8-2.00.41.7
Diff in mean of infusions in LGA sessions3.43.84.3-2.0-2.11.62.1
Delay discount exponential model param0.10.10.20.3-0.4-0.40.3
Extinction: sum of active levers before priming5.15.16.1-2.5-2.12.12.3
Active lever presses in extinction session 62.92.84.21.52.0-1.1-1.9
Bone: final force0.91.42.91.60.0-1.7-0.4
Bone: final moment0.81.32.81.5-0.3-1.7-0.1
Food consumed during 24 hour testing period0.50.61.21.0-0.6-1.10.3
Glucose1.11.72.8-1.7-0.71.60.9
Heart weight0.71.02.00.4-1.4-0.71.1
Delay discount hyperbolic model param0.10.10.10.1-0.4-0.20.3
Intermittent access intake day 1-15 change0.50.51.10.2-1.1-0.50.8
Intermittent access intake escalation0.30.30.60.6-0.5-0.80.3
Intermittent access intake escalation 20.50.51.1-0.1-1.1-0.10.9
Intermitt. access day 1 inactive lever presses3.53.86.32.51.0-2.5-1.4
Intermitt. access day 15 inactive lever presses7.07.712.13.51.7-3.3-2.2
Intermitt. access escalation Index0.30.30.6-0.70.20.8-0.1
Intermittent access day 1 total infusions0.70.81.31.10.5-1.1-0.6
Intermittent access day 15 total infusions1.11.22.41.50.1-1.5-0.5
Intermittent access terminal intake (last 3 days)1.31.42.51.60.4-1.6-0.6
Intermittent access total infusions1.31.42.51.60.4-1.6-0.6
Intermittent access day 1 locomotion0.50.51.10.9-0.1-1.0-0.2
Intermittent access day 15 total locomotion0.30.30.50.4-0.7-0.70.4
Intermittent access total locomotion0.80.91.91.2-0.2-1.4-0.1
Intermittent access standard deviation2.62.73.11.71.8-1.4-1.7
Left kidney weight1.64.49.12.8-0.5-3.0-0.2
Right kidney weight1.74.89.63.00.2-3.1-0.8
Cocaine induced anxiety1.41.73.8-0.4-1.90.01.6
Post-drug Anxiety0.91.01.31.10.9-1.0-0.9
Baseline Anxiety3.94.17.01.62.7-1.0-2.5
Tail length0.41.32.51.4-0.7-1.60.4
Length with tail0.93.57.12.6-0.2-2.7-0.2
Length without tail0.51.22.31.50.3-1.5-0.5
Times rat made contact with spout0.10.10.20.20.5-0.1-0.4
Lifetime Intake0.60.71.21.10.3-1.1-0.5
Liver weight, left3.14.96.32.12.5-1.7-2.5
Liver weight, right2.33.84.71.92.2-1.5-2.1
Locomotor activity0.00.00.10.10.30.2-0.1
Locomotor testing distance0.10.20.40.60.4-0.4-0.3
Locomotor testing rearing0.30.40.80.9-0.0-0.8-0.1
Locomotion in novel chamber0.91.12.1-1.40.11.50.2
Locomotion in novel chamber post-restriction0.20.20.50.10.70.1-0.6
Fecal boli incidents, locomotor time 10.10.10.20.3-0.4-0.30.3
Change in fecal boli incidents, locomotor task2.01.93.9-1.90.12.00.3
Time >=10cm from walls, locomotor time 10.10.10.20.00.50.1-0.4
Bouts of movement, locomotor time 15.56.08.0-2.3-2.81.82.7
Total resting periods, locomotor time 13.23.53.9-2.0-2.01.62.0
Rest time, locomotor task time 10.70.81.71.2-0.2-1.3-0.0
Distance moved, locomotor task time 10.30.40.8-0.80.20.90.0
Vertical activity count, locomotor time 14.44.67.5-2.7-1.42.51.6
Time >=10cm from walls, locomotor time 20.40.40.7-0.40.80.6-0.6
Bouts of movement, locomotor time 20.10.10.10.30.3-0.3-0.3
Total resting periods, locomotor time 20.00.00.0-0.0-0.10.00.0
Rest time, locomotor task time 20.81.01.0-1.0-1.00.81.0
Distance moved, locomotor task time 20.00.00.0-0.10.20.1-0.1
Vertical activity count, locomotor time 20.40.40.6-0.8-0.50.70.5
Light reinforcement 13.05.46.0-2.4-2.42.02.4
Light reinforcement 21.92.54.2-2.0-0.72.01.1
Bone: marrow area1.63.57.32.6-0.2-2.7-0.3
Bone: maximum diameter0.91.73.21.80.3-1.8-0.6
Bone: maximum force1.83.16.02.40.3-2.4-0.8
Bone: maximum moment1.62.75.62.2-0.1-2.4-0.4
Mean time between licks in bursts0.50.71.3-1.2-0.11.10.3
Mean num. licks in bursts0.50.60.70.80.7-0.7-0.8
Cd content in liver1.11.22.5-0.4-1.60.11.4
Co content in liver2.83.24.1-1.7-2.01.42.0
Cu content in liver0.20.20.40.6-0.0-0.6-0.1
Fe content in liver0.70.91.0-1.0-1.00.81.0
K content in liver0.20.20.2-0.5-0.50.40.5
Mg content in liver0.10.10.2-0.10.50.2-0.4
Mn content in liver0.30.30.60.40.8-0.2-0.7
Na content in liver1.71.73.5-1.8-0.11.90.4
Rb content in liver0.10.20.30.50.2-0.5-0.3
Se content in liver0.70.92.0-0.11.40.5-1.1
Sr content in liver9.08.213.9-3.7-1.63.52.0
Zn content in liver1.31.52.01.11.4-0.8-1.4
Bone: minimum diameter1.22.34.82.0-0.7-2.20.2
Time in familiar zone, hab. session 11.71.63.8-0.2-1.9-0.21.6
Time in novel zone, hab. session 10.60.60.9-0.61.00.8-0.6
Total zone transitions, hab. session 13.54.97.5-1.9-2.71.32.6
Total locomotion distance, hab. session 12.33.34.7-1.7-2.21.22.0
Locomotion velocity, hab. session 11.72.33.3-1.4-1.81.01.7
Time in familiar zone, hab. session 22.52.64.92.20.4-2.2-0.7
Time in novel zone, hab. session 21.11.12.3-1.40.11.50.2
Total zone transitions, hab. session 21.21.53.6-0.3-1.9-0.11.6
Total locomotion distance, hab. session 21.21.62.0-1.2-1.40.91.4
Locomotion velocity, hab. session 21.52.02.4-1.5-1.51.11.5
Novel to familiar place preference ratio0.30.30.30.60.5-0.5-0.5
Novelty place preference0.20.20.30.50.3-0.5-0.3
Time in novel zone, NPP test0.30.30.40.70.3-0.6-0.4
Total zone transitions, NPP test0.60.81.5-0.7-1.20.41.1
Total locomotion distance, NPP test0.10.10.20.1-0.5-0.20.3
Locomotion velocity, NPP test0.20.30.8-0.2-0.90.00.7
Intraocular pressure0.60.91.1-1.0-0.90.80.9
Delta distance traveled before/after self-admin0.30.30.5-0.70.30.7-0.1
Delta ambulatory time before/after self-admin0.30.30.7-0.80.10.80.1
Parametrial fat weight1.63.06.5-0.62.51.2-2.0
Pavlov. Cond. lever latency0.10.20.3-0.5-0.30.50.4
Pavlov. Cond. magazine entry latency1.01.22.20.91.5-0.5-1.3
Pavlov. Cond. change in total contacts0.00.00.1-0.30.00.30.0
Pavlov. Cond. index score0.10.10.2-0.10.40.2-0.3
Pavlov. Cond. latency score0.10.10.30.10.5-0.0-0.4
Pavlov. Cond. lever contacts1.01.11.61.30.9-1.1-1.0
Pavlov. Cond. magazine entry number0.10.10.20.0-0.4-0.10.3
Pavlov. Cond. intertrial magazine entries3.34.04.5-2.1-2.11.72.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.10.50.1-0.4
Pavlov. Cond. response bias1.31.61.81.41.3-1.1-1.3
Pavlov. Cond. lever latency0.20.20.50.5-0.3-0.70.1
Pavlov. Cond. magazine entry latency0.50.61.50.21.20.1-1.0
Pavlov. Cond. change in total contacts0.30.40.8-0.4-0.90.20.8
Pavlov. Cond. index score0.10.10.40.20.60.0-0.5
Pavlov. Cond. latency score0.20.30.60.10.80.1-0.6
Pavlov. Cond. lever contacts0.10.10.10.20.4-0.1-0.3
Pavlov. Cond. magazine entry number0.20.20.5-0.1-0.7-0.10.5
Pavlov. Cond. intertrial magazine entries0.81.11.81.0-1.1-1.30.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.20.40.0-0.3
Pavlov. Cond. response bias0.10.10.20.40.1-0.3-0.1
Time in closed arm before self-admin0.40.40.80.90.0-0.9-0.2
Time in closed arm after self-admin1.01.01.11.01.1-0.8-1.1
Time in open arm before self-admin0.30.30.4-0.50.60.6-0.4
Time in open arm after self-admin1.01.11.4-1.2-1.01.01.0
Bone: periosteal estimation1.12.24.72.0-0.2-2.2-0.2
Bone: periosteal perimeter0.61.12.11.3-0.6-1.50.3
Bone: post-yield work2.63.66.42.50.7-2.5-1.0
Progressive ratio test 1 active lever presses0.50.51.20.0-1.1-0.30.8
Progressive ratio test 1 breakpoint0.40.41.00.1-1.0-0.40.8
Progressive ratio test 1 inactive lever presses1.11.22.31.2-1.0-1.50.5
Progressive ratio test 2 active lever presses1.11.22.31.50.2-1.5-0.5
Progressive ratio test 2 breakpoint1.41.63.01.70.3-1.7-0.6
Progressive ratio test 2 inactive lever presses1.11.32.81.4-0.6-1.70.1
Incentive Sensitization - Responses4.54.68.12.90.8-2.8-1.2
Incentive Sensitization - Breakpoint4.44.57.72.81.0-2.7-1.4
Sum of active levers in priming session hrs 5-62.22.22.5-1.6-1.51.31.5
Progressive ratio2.52.94.0-2.0-1.51.71.6
Food seeking constrained by brief footshock22.828.131.2-5.5-5.64.55.6
Seeking ratio, punishment vs. effort1.61.93.2-1.0-1.80.71.7
Retroperitoneal fat weight1.34.48.1-1.22.82.0-2.0
Reaction time number correct0.20.20.4-0.7-0.30.60.3
Reaction time mean minus median0.40.60.60.80.7-0.7-0.8
Reaction time mean minus median AUC0.70.91.01.01.0-0.8-1.0
Reaction time num false alarms0.00.10.1-0.2-0.30.10.3
Reaction time num false alarms AUC1.11.51.9-1.4-1.11.21.1
Reaction time trials correct on left0.20.20.4-0.7-0.30.60.3
Reaction time trials on left0.20.20.4-0.7-0.30.60.3
Reaction time mean1.62.23.61.90.9-1.8-1.1
Reaction time mean AUC2.12.83.82.01.3-1.8-1.5
Median of all reaction times1.01.42.41.50.6-1.5-0.8
Reaction time omissions0.30.40.5-0.7-0.50.60.5
Reaction time false alarm rate0.60.81.0-1.0-0.90.80.9
Reaction time premature initiation rate0.50.70.80.90.8-0.7-0.8
Reaction time premature initiations0.40.60.80.70.9-0.5-0.9
Std. dev. reaction times1.62.23.21.81.0-1.7-1.3
Reaction time trials completed0.20.20.4-0.7-0.30.60.3
Reaction time trials AUC0.00.10.1-0.3-0.00.30.1
Run reversals in cocaine runway, females0.40.40.70.80.4-0.8-0.5
Run reversals in cocaine runway, males0.10.10.20.40.3-0.4-0.3
Latency to leave start box in cocaine runway0.10.10.30.1-0.6-0.20.4
Latency to leave start box in cocaine runway, F0.20.20.4-0.3-0.70.20.6
Latency to leave start box in cocaine runway, M0.60.51.01.00.1-1.0-0.3
Std. dev. time between licks in bursts4.14.95.8-2.2-2.31.92.4
Total sessions with >9 infusions1.11.22.71.50.0-1.6-0.4
Short access day 1 total inactive lever presses3.53.95.42.31.6-2.1-1.8
Short access day 10 total inactive lever presses0.60.61.11.00.4-1.0-0.5
Short access day 1 total infusions0.10.10.2-0.2-0.40.10.3
Short access day 10 total infusions0.20.20.20.50.5-0.4-0.5
Short access total infusions0.10.10.3-0.5-0.10.50.1
Short access day 1 locomotion0.40.40.80.8-0.0-0.9-0.2
Short access day 10 total locomotion1.21.32.7-0.7-1.60.31.4
Short access total locomotion1.51.62.1-1.2-1.50.91.4
One hour access (0.3 mA shock)2.12.44.92.10.1-2.2-0.6
Compulsive drug intake0.30.30.60.5-0.5-0.80.2
One hour access (shock baseline)3.33.85.62.41.5-2.1-1.7
Social response proportion1.01.12.01.40.6-1.2-0.6
Social responses0.70.91.50.7-1.2-0.90.9
Social time4.86.412.7-1.4-3.60.73.2
Soleus weight0.00.10.20.40.2-0.3-0.2
Bone: stiffness1.52.44.62.10.3-2.1-0.7
Tibialis anterior weight1.03.46.61.22.6-0.6-2.3
Time to tail flick, vehicle, before self-admin0.20.20.40.3-0.7-0.50.4
Time to tail flick, vehicle, after self-admin1.31.42.31.50.6-1.5-0.8
Time to tail flick, test, before self-admin6.86.69.5-2.3-3.11.72.9
Time to tail flick, test, after self-admin0.30.30.30.50.6-0.4-0.6
Delta time to tail flick, vehicle, before/after SA1.21.11.41.11.2-0.8-1.2
Delta time to tail flick, test, before/after SA3.53.24.11.72.0-1.3-2.0
Tibia length1.85.010.33.0-0.0-3.2-0.6
Ambulatory time before self-admin3.43.56.5-1.2-2.60.72.3
Ambulatory time after self-admin6.77.410.8-2.4-3.31.83.1
Bone: tissue strength1.21.21.6-1.0-1.20.81.2
Total heroin consumption0.60.71.3-1.1-0.11.10.3
Bone: trabecular number0.40.70.9-1.0-0.70.80.7
Bone: trabecular spacing0.30.40.60.50.8-0.4-0.8
Bone: trabecular thickness0.00.00.00.10.1-0.1-0.1
Bone: trabecular tissue density1.62.34.70.82.2-0.4-1.9
Water consumed over 24 hours1.11.32.6-0.5-1.60.21.5
Number of responses in last shaping day0.40.40.70.80.4-0.8-0.5