Lamtor1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Lamtor1 0.1 0.08 1.5e-03 0.06 0.03 0.04 0.04 3.9e-04 6.1e-03 3.1e-03 2.2e-03
2 NAcc gene expression Lamtor1 0.02 0.02 8.1e-03 0 0.01 0.01 0 8.6e-02 6.5e-03 3.2e-02 4.5e-02
3 Adipose gene expression Lamtor1 0.14 0.08 2.3e-12 0.06 0.1 0.09 0.09 5.0e-07 6.3e-11 1.3e-10 1.2e-10

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.60.60.0
Area under the delay curve0.30.40.90.50.2-0.9
BMI with tail0.82.86.10.61.42.5
BMI without tail0.61.93.9-1.3-0.52.0
Body weight0.20.81.5-1.2-1.00.2
Weight adjusted by age0.30.40.8-0.7-0.90.0
Bone surface0.61.11.4-1.1-1.2-0.6
Bone volume0.30.60.7-0.7-0.8-0.6
Breakpoint value in progressive ratio session0.60.71.30.91.10.4
Number of licking bursts2.03.35.72.41.9-0.5
Context. condit. distance diff. score2.32.84.8-2.2-1.61.1
Locomotion velocity, session 11.71.82.21.01.51.5
Locomotion distance, session 10.81.02.6-0.60.11.6
Locomotion velocity, session 20.60.71.9-0.20.51.4
Locomotion distance, session 20.71.02.7-0.40.41.7
Locomotion velocity, session 30.50.61.1-1.1-0.70.3
Locomotion distance, session 30.50.61.0-1.0-0.60.7
Stereotopy head waving bouts, day 30.30.41.0-0.1-0.3-1.0
Stereotopy head waving duration, day 30.20.20.4-0.7-0.30.4
Locomotion velocity, session 70.60.61.20.30.81.1
Locomotion distance, session 70.10.10.20.50.4-0.2
Stereotopy head waving bouts, day 72.73.05.6-2.4-1.80.6
Stereotopy head waving duration, day 72.42.95.2-2.3-1.60.8
Locomotion velocity, session 81.11.32.4-1.5-1.30.3
Locomotion distance, session 81.92.84.3-2.1-1.21.6
Degree of sensitization distance0.50.51.40.3-0.2-1.2
Degree of sensitization stereotypy4.65.08.8-3.0-2.30.8
Conditioned locomotion0.40.51.20.4-0.1-1.1
Cocaine response after cond. corrected0.91.01.71.31.1-0.3
Cocaine response after cond. not corrected0.70.81.30.91.20.6
Cocaine response before conditioning1.31.52.9-1.2-0.31.7
Saline control response2.63.55.2-2.0-2.3-1.1
Bone: connectivity density0.61.01.60.51.01.3
Bone: cortical apparent density0.91.22.01.41.0-0.8
Bone: cortical area0.20.30.4-0.6-0.5-0.3
Bone: cortical porosity0.10.10.3-0.0-0.3-0.5
Bone: cortical porosity0.10.20.2-0.2-0.4-0.5
Bone: cortical thickness0.61.01.60.81.30.8
Bone: cortical thickness0.00.00.0-0.1-0.2-0.1
Bone: cortical tissue density0.91.32.21.51.0-0.7
Condit. Reinf. active minus inactive responses1.31.42.0-0.8-1.4-1.3
Condit. Reinf. active-inactive response ratio2.62.73.6-1.2-1.9-1.8
Condit. Reinf. active responses0.60.81.7-0.1-0.7-1.3
Condit. Reinf. inactive responses0.40.50.80.90.80.1
Incentive salience index mean0.70.81.4-0.4-1.0-1.2
Condit. Reinf. lever presses0.00.00.00.00.00.0
Condit. Reinf. active minus inactive responses6.78.713.4-3.7-3.5-0.4
Condit. Reinf. active-inactive response ratio1.01.22.1-1.5-1.20.3
Condit. Reinf. active responses8.912.318.2-4.3-4.3-0.8
Condit. Reinf. inactive responses4.86.39.5-2.9-3.1-1.1
Condit. Reinf. lever presses11.616.127.9-5.3-4.50.5
Condit. Reinf. lever reinforcers received9.312.919.3-4.4-4.3-0.7
Conditioned reinforcement - actives0.10.20.3-0.6-0.10.3
Conditioned reinforcement - inactives0.50.71.30.80.4-1.1
Conditioned locomotion0.60.81.9-0.60.01.4
Patch foraging indifference point 0 sec1.22.23.9-2.0-1.50.6
Patch foraging indifference point AUC0.30.40.7-0.6-0.8-0.4
Delay disc. indifference point, 0s delay0.70.71.2-1.1-1.0-0.0
Delay disc. indifference point, 16s delay0.70.82.40.3-0.1-1.5
Delay disc. indifference point, 2s delay0.80.91.1-0.9-1.1-0.9
Delay disc. indifference point, 24s delay1.01.11.51.10.8-1.2
Delay disc. indifference point, 4s delay1.41.42.0-1.2-1.4-0.9
Delay disc. indifference point, 8s delay0.20.30.40.70.4-0.5
Indifference point function ln k0.10.20.4-0.6-0.00.6
Indifference point function log k0.10.20.4-0.6-0.00.6
Patch foraging total patch changes 0 sec1.01.83.3-1.8-1.30.7
Patch foraging total patch changes 12 sec0.91.21.8-1.3-1.3-0.5
Patch foraging total patch changes 18 sec0.81.32.2-1.5-1.30.0
Patch foraging total patch changes 24 sec0.81.32.0-1.4-1.4-0.4
Patch foraging total patch changes 6 sec0.40.60.8-0.9-0.80.5
Patch foraging time to switch 0 sec1.93.86.82.62.1-0.6
Patch foraging water rate 0 sec1.42.84.9-2.2-1.80.5
Patch foraging water rate 12 sec1.32.75.5-1.6-0.32.4
Patch foraging water rate 18 sec1.72.64.4-2.1-1.41.2
Patch foraging water rate 24 sec0.60.92.2-0.60.31.5
Patch foraging water rate 6 sec0.81.22.4-1.1-0.01.5
Seeking ratio, delayed vs. immediate footshock1.72.13.31.71.80.5
Distance traveled before self-admin0.60.80.90.81.00.9
Distance traveled after self-admin1.21.53.10.31.11.8
Extensor digitorum longus weight0.00.20.30.50.50.0
Bone: elastic displacement2.22.53.91.72.01.0
Bone: elastic work3.74.97.02.22.71.7
Bone: endosteal estimation1.63.65.1-1.9-2.3-1.4
Bone: endosteal perimeter1.83.85.6-2.2-2.4-1.0
Epididymis fat weight0.30.91.51.21.10.2
Delta time in closed arm before/after self-admin0.80.71.11.00.6-0.8
Delta time in open arm before/after self-admin3.13.04.5-2.1-2.1-0.6
Diff in mean of infusions in LGA sessions1.92.34.31.50.7-2.1
Delay discount exponential model param0.30.30.6-0.6-0.40.7
Extinction: sum of active levers before priming0.10.20.2-0.4-0.4-0.3
Active lever presses in extinction session 60.80.82.2-0.50.11.5
Bone: final force0.60.92.40.6-0.1-1.6
Bone: final moment0.40.71.90.4-0.2-1.4
Food consumed during 24 hour testing period1.52.13.5-1.9-1.31.0
Glucose0.20.30.80.00.40.9
Heart weight0.71.21.8-1.3-1.3-0.3
Delay discount hyperbolic model param0.30.30.7-0.4-0.20.8
Intermittent access intake day 1-15 change1.02.05.3-0.40.72.3
Intermittent access intake escalation0.81.74.7-0.60.42.2
Intermittent access intake escalation 20.30.41.1-0.20.31.0
Intermitt. access day 1 inactive lever presses0.41.72.41.51.2-1.2
Intermitt. access day 15 inactive lever presses0.10.20.40.60.6-0.1
Intermitt. access escalation Index0.00.10.1-0.1-0.2-0.3
Intermittent access day 1 total infusions0.81.32.1-1.4-1.3-0.4
Intermittent access day 15 total infusions0.50.71.2-1.1-0.70.6
Intermittent access terminal intake (last 3 days)0.81.02.1-1.4-1.00.3
Intermittent access total infusions1.01.12.3-1.5-1.00.3
Intermittent access day 1 locomotion0.20.30.5-0.3-0.5-0.7
Intermittent access day 15 total locomotion0.30.51.2-0.20.41.1
Intermittent access total locomotion0.30.30.7-0.8-0.60.2
Intermittent access standard deviation0.20.41.0-0.10.51.0
Left kidney weight0.10.40.7-0.8-0.60.4
Right kidney weight0.20.91.5-1.1-1.2-0.3
Cocaine induced anxiety1.92.84.82.21.4-1.2
Post-drug Anxiety1.61.73.41.20.3-1.9
Baseline Anxiety2.22.54.0-1.7-2.0-0.8
Tail length2.710.615.7-3.2-4.0-2.5
Length with tail2.19.112.7-3.0-3.6-2.4
Length without tail0.10.40.5-0.5-0.5-0.7
Times rat made contact with spout0.10.20.40.20.1-0.7
Lifetime Intake1.31.63.2-1.8-1.20.4
Liver weight, left0.30.51.40.3-0.1-1.2
Liver weight, right0.50.92.40.3-0.4-1.6
Locomotor activity0.30.40.6-0.8-0.50.7
Locomotor testing distance1.01.73.0-1.7-1.40.5
Locomotor testing rearing0.61.21.8-1.3-1.3-0.4
Locomotion in novel chamber1.21.62.21.11.51.2
Locomotion in novel chamber post-restriction0.40.71.2-1.1-0.50.8
Fecal boli incidents, locomotor time 10.91.32.21.51.2-0.5
Change in fecal boli incidents, locomotor task0.20.20.4-0.5-0.60.0
Time >=10cm from walls, locomotor time 10.50.51.0-0.7-1.0-0.3
Bouts of movement, locomotor time 10.50.61.2-0.2-0.6-1.1
Total resting periods, locomotor time 10.20.20.40.3-0.0-0.6
Rest time, locomotor task time 10.10.10.3-0.1-0.2-0.6
Distance moved, locomotor task time 10.00.10.1-0.10.20.4
Vertical activity count, locomotor time 10.00.00.1-0.2-0.1-0.3
Time >=10cm from walls, locomotor time 22.63.96.1-1.9-2.5-1.3
Bouts of movement, locomotor time 21.52.44.8-0.6-1.4-2.2
Total resting periods, locomotor time 20.91.63.9-0.2-0.9-2.0
Rest time, locomotor task time 21.31.72.61.61.6-0.0
Distance moved, locomotor task time 21.72.13.4-1.8-1.70.0
Vertical activity count, locomotor time 20.70.91.2-0.7-1.1-1.0
Light reinforcement 11.63.95.32.32.31.1
Light reinforcement 22.33.57.10.91.62.7
Bone: marrow area1.43.14.3-1.7-2.1-1.4
Bone: maximum diameter1.83.34.8-2.2-2.2-0.7
Bone: maximum force0.20.30.90.3-0.0-0.9
Bone: maximum moment0.10.20.50.1-0.1-0.7
Mean time between licks in bursts3.38.112.2-2.9-3.5-2.0
Mean num. licks in bursts1.92.95.1-2.3-1.90.3
Cd content in liver0.40.41.20.3-0.3-1.1
Co content in liver2.63.04.0-1.8-2.0-1.3
Cu content in liver1.31.62.0-1.0-1.4-1.3
Fe content in liver0.00.00.1-0.10.0-0.2
K content in liver0.20.20.30.60.4-0.3
Mg content in liver0.20.20.50.00.20.7
Mn content in liver1.92.13.41.31.81.1
Na content in liver0.60.71.1-1.1-0.50.8
Rb content in liver0.30.40.5-0.5-0.6-0.7
Se content in liver3.94.67.12.72.6-0.0
Sr content in liver1.31.13.0-0.30.41.7
Zn content in liver1.51.62.7-1.6-1.30.6
Bone: minimum diameter1.22.22.8-1.3-1.7-1.5
Time in familiar zone, hab. session 10.20.10.2-0.5-0.40.1
Time in novel zone, hab. session 10.30.30.60.40.1-0.8
Total zone transitions, hab. session 10.20.30.8-0.40.10.9
Total locomotion distance, hab. session 10.40.61.50.1-0.5-1.2
Locomotion velocity, hab. session 10.20.30.90.1-0.3-0.9
Time in familiar zone, hab. session 22.93.04.7-1.9-2.2-0.8
Time in novel zone, hab. session 22.62.63.81.31.91.5
Total zone transitions, hab. session 21.62.03.2-1.8-1.11.3
Total locomotion distance, hab. session 20.91.11.7-1.0-1.3-0.8
Locomotion velocity, hab. session 20.81.11.6-1.0-1.3-0.9
Novel to familiar place preference ratio1.51.63.4-0.4-1.1-1.9
Novelty place preference1.41.53.0-0.5-1.1-1.7
Time in novel zone, NPP test1.61.83.1-0.7-1.3-1.8
Total zone transitions, NPP test0.91.43.40.20.81.8
Total locomotion distance, NPP test0.20.30.40.60.60.5
Locomotion velocity, NPP test0.50.70.90.81.00.6
Intraocular pressure0.30.50.70.50.60.8
Delta distance traveled before/after self-admin1.11.22.2-1.5-1.10.0
Delta ambulatory time before/after self-admin0.70.91.7-1.3-0.90.2
Parametrial fat weight1.33.04.31.11.92.1
Pavlov. Cond. lever latency0.70.91.41.01.20.6
Pavlov. Cond. magazine entry latency2.43.15.3-2.3-2.00.3
Pavlov. Cond. change in total contacts1.71.82.7-1.3-1.7-1.0
Pavlov. Cond. index score1.82.33.6-1.9-1.8-0.2
Pavlov. Cond. latency score1.72.13.2-1.8-1.7-0.3
Pavlov. Cond. lever contacts0.80.91.4-1.2-1.1-0.3
Pavlov. Cond. magazine entry number2.32.94.72.22.00.1
Pavlov. Cond. intertrial magazine entries0.60.81.41.20.8-0.5
Pavlov. Cond. lever-magazine prob. diff.1.51.93.0-1.7-1.6-0.2
Pavlov. Cond. response bias1.11.32.2-1.5-1.30.2
Pavlov. Cond. lever latency12.917.531.05.64.4-1.4
Pavlov. Cond. magazine entry latency3.44.16.4-2.2-0.92.5
Pavlov. Cond. change in total contacts9.515.226.9-5.2-4.11.5
Pavlov. Cond. index score9.012.121.3-4.6-3.41.8
Pavlov. Cond. latency score7.810.418.2-4.3-3.02.0
Pavlov. Cond. lever contacts11.816.328.5-5.3-4.31.2
Pavlov. Cond. magazine entry number5.16.29.83.11.9-2.3
Pavlov. Cond. intertrial magazine entries1.21.93.4-0.6-1.4-1.9
Pavlov. Cond. lever-magazine prob. diff.8.811.720.7-4.5-3.41.7
Pavlov. Cond. response bias12.016.429.0-5.4-4.11.8
Time in closed arm before self-admin1.41.83.0-1.7-1.21.0
Time in closed arm after self-admin0.40.40.60.80.7-0.2
Time in open arm before self-admin4.75.17.82.82.70.4
Time in open arm after self-admin0.20.20.2-0.4-0.4-0.4
Bone: periosteal estimation0.81.82.3-1.5-1.5-0.8
Bone: periosteal perimeter1.01.72.7-1.6-1.5-0.3
Bone: post-yield work0.10.20.4-0.6-0.5-0.1
Progressive ratio test 1 active lever presses0.00.00.0-0.1-0.00.0
Progressive ratio test 1 breakpoint0.00.00.0-0.1-0.1-0.0
Progressive ratio test 1 inactive lever presses0.10.20.30.40.5-0.3
Progressive ratio test 2 active lever presses0.20.20.3-0.6-0.5-0.2
Progressive ratio test 2 breakpoint0.20.20.4-0.6-0.5-0.1
Progressive ratio test 2 inactive lever presses0.10.10.2-0.20.10.4
Incentive Sensitization - Responses0.30.40.6-0.8-0.7-0.2
Incentive Sensitization - Breakpoint0.20.20.5-0.7-0.50.1
Sum of active levers in priming session hrs 5-60.10.10.3-0.3-0.10.5
Progressive ratio0.61.02.6-0.50.31.6
Food seeking constrained by brief footshock1.62.03.1-1.8-1.7-0.1
Seeking ratio, punishment vs. effort1.01.52.2-1.0-1.5-1.2
Retroperitoneal fat weight0.52.03.41.81.6-0.3
Reaction time number correct0.10.20.4-0.20.40.7
Reaction time mean minus median0.20.60.9-0.8-1.0-0.5
Reaction time mean minus median AUC0.20.50.8-0.9-0.8-0.3
Reaction time num false alarms1.52.13.41.91.1-1.4
Reaction time num false alarms AUC1.32.03.41.81.2-1.1
Reaction time trials correct on left0.10.20.4-0.20.40.7
Reaction time trials on left0.10.20.5-0.20.40.7
Reaction time mean1.01.63.01.20.5-1.7
Reaction time mean AUC1.11.72.91.30.6-1.7
Median of all reaction times1.62.22.91.70.9-1.7
Reaction time omissions0.10.20.30.50.5-0.2
Reaction time false alarm rate1.42.03.61.91.1-1.1
Reaction time premature initiation rate1.72.33.6-1.7-1.9-0.6
Reaction time premature initiations0.71.32.2-1.5-1.3-0.1
Std. dev. reaction times0.71.33.1-0.2-0.9-1.8
Reaction time trials completed0.10.20.5-0.20.40.7
Reaction time trials AUC0.10.10.3-0.20.30.5
Run reversals in cocaine runway, females0.40.40.6-0.6-0.8-0.3
Run reversals in cocaine runway, males0.30.30.40.60.6-0.2
Latency to leave start box in cocaine runway0.81.01.41.20.8-0.9
Latency to leave start box in cocaine runway, F1.11.22.80.90.2-1.7
Latency to leave start box in cocaine runway, M1.11.01.31.01.20.8
Std. dev. time between licks in bursts2.12.83.7-1.4-1.9-1.7
Total sessions with >9 infusions1.82.24.2-2.0-1.50.3
Short access day 1 total inactive lever presses0.30.41.1-0.1-0.3-1.0
Short access day 10 total inactive lever presses0.61.42.31.51.1-0.8
Short access day 1 total infusions2.63.45.1-2.3-2.2-0.6
Short access day 10 total infusions1.31.73.3-1.8-1.30.3
Short access total infusions1.82.44.4-2.1-1.60.1
Short access day 1 locomotion0.40.50.7-0.8-0.50.7
Short access day 10 total locomotion0.30.61.1-1.0-0.40.7
Short access total locomotion0.20.20.5-0.40.10.7
One hour access (0.3 mA shock)0.40.50.9-0.9-0.30.8
Compulsive drug intake1.72.02.81.51.70.9
One hour access (shock baseline)1.11.73.4-1.9-1.00.8
Social response proportion0.30.30.50.70.6-0.1
Social responses0.30.41.10.3-0.0-1.0
Social time1.41.92.81.71.70.1
Soleus weight0.20.71.70.6-0.1-1.3
Bone: stiffness1.11.84.70.8-0.2-2.2
Tibialis anterior weight0.10.40.7-0.4-0.6-0.9
Time to tail flick, vehicle, before self-admin0.70.71.1-1.0-0.31.0
Time to tail flick, vehicle, after self-admin0.81.11.5-1.2-1.2-0.6
Time to tail flick, test, before self-admin2.93.04.5-2.0-2.1-0.9
Time to tail flick, test, after self-admin2.42.53.5-1.2-1.9-1.6
Delta time to tail flick, vehicle, before/after SA0.30.30.70.0-0.3-0.9
Delta time to tail flick, test, before/after SA0.90.91.51.21.10.1
Tibia length0.30.91.5-1.2-1.2-0.1
Ambulatory time before self-admin0.60.81.11.01.00.7
Ambulatory time after self-admin0.60.71.9-0.40.41.4
Bone: tissue strength2.22.23.20.91.61.8
Total heroin consumption0.20.20.5-0.4-0.10.7
Bone: trabecular number0.91.52.51.31.60.7
Bone: trabecular spacing0.50.71.8-0.6-0.11.4
Bone: trabecular thickness1.01.33.40.2-0.6-1.8
Bone: trabecular tissue density2.13.18.31.0-0.3-2.9
Water consumed over 24 hours0.20.20.40.60.6-0.0
Number of responses in last shaping day1.31.53.41.0-0.1-1.8