LOC134483966

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC134483966 0.04 0.03 8.5e-04 0.02 0.03 0.02 0.03 8.1e-03 1.3e-03 2.3e-03 1.3e-03
2 PL gene expression LOC134483966 0.02 0.02 9.3e-03 0 0 -0 0 8.1e-02 1.6e-01 4.0e-01 2.5e-01
3 Adipose gene expression LOC134483966 0.14 0.09 6.6e-08 0.06 0.05 0.05 0.06 5.5e-07 2.8e-06 2.9e-06 5.7e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.7-0.00.91.3
Area under the delay curve0.20.30.90.00.10.9
BMI with tail2.79.319.9-0.82.74.5
BMI without tail0.31.94.2-0.71.02.0
Body weight2.510.913.8-2.43.73.6
Weight adjusted by age0.20.71.3-0.61.20.6
Bone surface1.52.95.0-0.82.21.8
Bone volume0.81.52.3-0.11.51.5
Breakpoint value in progressive ratio session1.11.92.9-1.71.7-0.4
Number of licking bursts0.00.00.0-0.0-0.10.2
Context. condit. distance diff. score0.50.61.00.7-0.61.0
Locomotion velocity, session 10.10.10.3-0.2-0.20.6
Locomotion distance, session 10.60.81.9-0.50.61.4
Locomotion velocity, session 21.51.82.6-1.31.61.1
Locomotion distance, session 20.20.20.4-0.60.30.5
Locomotion velocity, session 31.31.54.20.20.52.0
Locomotion distance, session 30.10.10.1-0.40.20.4
Stereotopy head waving bouts, day 31.11.32.41.1-0.51.6
Stereotopy head waving duration, day 30.50.61.10.7-0.51.1
Locomotion velocity, session 70.30.30.60.5-0.00.8
Locomotion distance, session 70.40.51.30.3-0.21.1
Stereotopy head waving bouts, day 70.10.10.20.20.30.5
Stereotopy head waving duration, day 70.81.01.7-0.81.30.7
Locomotion velocity, session 80.10.10.2-0.4-0.3-0.1
Locomotion distance, session 80.81.22.01.0-0.81.4
Degree of sensitization distance1.21.33.30.8-0.11.8
Degree of sensitization stereotypy0.40.40.9-0.41.00.4
Conditioned locomotion0.40.40.6-0.80.80.2
Cocaine response after cond. corrected0.20.40.70.4-0.90.4
Cocaine response after cond. not corrected0.20.20.40.5-0.60.4
Cocaine response before conditioning0.20.30.6-0.30.8-0.4
Saline control response2.02.84.5-2.11.90.5
Bone: connectivity density1.52.43.4-0.81.81.7
Bone: cortical apparent density0.50.70.9-0.90.6-0.9
Bone: cortical area0.50.81.5-0.51.20.7
Bone: cortical porosity0.40.51.3-0.2-0.2-1.1
Bone: cortical porosity0.30.30.7-0.50.1-0.8
Bone: cortical thickness2.94.88.4-2.92.4-0.6
Bone: cortical thickness0.70.81.7-1.30.7-0.5
Bone: cortical tissue density0.60.91.2-1.10.8-1.0
Condit. Reinf. active minus inactive responses0.70.81.3-0.91.10.5
Condit. Reinf. active-inactive response ratio0.40.50.8-0.90.7-0.2
Condit. Reinf. active responses0.60.71.1-0.31.11.0
Condit. Reinf. inactive responses0.60.71.30.9-0.11.1
Incentive salience index mean1.01.31.7-0.81.31.2
Condit. Reinf. lever presses0.91.42.5-0.41.21.6
Condit. Reinf. active minus inactive responses0.20.40.50.7-0.3-0.7
Condit. Reinf. active-inactive response ratio0.71.12.81.7-0.70.1
Condit. Reinf. active responses0.10.10.1-0.20.3-0.4
Condit. Reinf. inactive responses0.40.61.5-1.20.5-0.3
Condit. Reinf. lever presses0.50.71.4-0.61.20.7
Condit. Reinf. lever reinforcers received0.20.20.3-0.40.5-0.5
Conditioned reinforcement - actives0.10.51.41.2-0.4-0.2
Conditioned reinforcement - inactives0.30.91.81.3-0.21.0
Conditioned locomotion2.03.05.52.3-1.70.7
Patch foraging indifference point 0 sec0.20.50.7-0.70.90.6
Patch foraging indifference point AUC0.51.12.2-0.91.5-0.5
Delay disc. indifference point, 0s delay0.70.81.30.8-0.71.1
Delay disc. indifference point, 16s delay0.20.20.60.20.30.8
Delay disc. indifference point, 2s delay0.60.71.11.0-0.50.9
Delay disc. indifference point, 24s delay0.10.20.2-0.50.30.4
Delay disc. indifference point, 4s delay0.60.61.3-0.60.41.1
Delay disc. indifference point, 8s delay0.10.20.50.2-0.70.0
Indifference point function ln k0.92.75.21.5-2.30.7
Indifference point function log k0.92.75.21.5-2.30.7
Patch foraging total patch changes 0 sec0.20.61.1-1.10.80.3
Patch foraging total patch changes 12 sec3.85.18.7-2.63.00.1
Patch foraging total patch changes 18 sec0.30.71.1-0.81.1-0.6
Patch foraging total patch changes 24 sec1.75.79.4-2.53.11.3
Patch foraging total patch changes 6 sec0.81.31.9-1.21.40.7
Patch foraging time to switch 0 sec0.20.71.30.40.71.2
Patch foraging water rate 0 sec0.10.50.80.1-0.9-0.8
Patch foraging water rate 12 sec0.31.33.40.6-1.9-0.4
Patch foraging water rate 18 sec0.20.40.70.1-0.80.7
Patch foraging water rate 24 sec0.50.71.60.7-1.3-0.4
Patch foraging water rate 6 sec0.60.92.30.4-1.5-0.3
Seeking ratio, delayed vs. immediate footshock0.00.10.1-0.10.30.4
Distance traveled before self-admin0.71.63.3-0.81.80.9
Distance traveled after self-admin0.30.60.8-0.90.9-0.4
Extensor digitorum longus weight4.417.627.0-4.35.22.7
Bone: elastic displacement0.50.61.3-0.2-0.7-1.2
Bone: elastic work0.91.22.5-1.61.00.0
Bone: endosteal estimation2.04.87.62.8-1.42.2
Bone: endosteal perimeter2.66.311.43.4-1.72.1
Epididymis fat weight0.83.87.32.7-1.41.4
Delta time in closed arm before/after self-admin1.31.22.0-1.40.80.9
Delta time in open arm before/after self-admin0.81.02.4-0.61.60.3
Diff in mean of infusions in LGA sessions1.42.43.7-1.91.90.0
Delay discount exponential model param0.20.30.80.0-0.1-0.9
Extinction: sum of active levers before priming2.03.05.2-1.62.31.1
Active lever presses in extinction session 61.71.73.8-1.22.00.3
Bone: final force1.11.92.7-0.81.61.5
Bone: final moment1.21.92.8-0.91.71.4
Food consumed during 24 hour testing period0.10.20.40.3-0.4-0.6
Glucose2.23.45.42.3-2.00.9
Heart weight1.01.63.80.8-0.52.0
Delay discount hyperbolic model param0.20.30.8-0.1-0.0-0.9
Intermittent access intake day 1-15 change0.42.13.11.8-1.3-1.1
Intermittent access intake escalation0.52.63.71.9-1.5-1.3
Intermittent access intake escalation 20.50.91.71.3-0.7-0.7
Intermitt. access day 1 inactive lever presses0.11.41.61.3-1.3-1.0
Intermitt. access day 15 inactive lever presses0.21.12.20.60.81.5
Intermitt. access escalation Index0.10.40.70.5-0.9-0.5
Intermittent access day 1 total infusions1.44.26.62.4-0.72.6
Intermittent access day 15 total infusions2.35.612.13.5-2.10.6
Intermittent access terminal intake (last 3 days)2.44.28.83.0-1.01.7
Intermittent access total infusions3.44.07.52.7-1.11.8
Intermittent access day 1 locomotion1.22.24.31.5-0.22.1
Intermittent access day 15 total locomotion0.62.24.12.0-0.41.6
Intermittent access total locomotion4.25.17.62.8-0.42.7
Intermittent access standard deviation0.21.22.21.5-1.1-0.3
Left kidney weight0.21.82.71.6-0.61.5
Right kidney weight0.10.91.41.2-0.41.0
Cocaine induced anxiety0.00.10.2-0.00.1-0.5
Post-drug Anxiety0.20.20.3-0.50.60.0
Baseline Anxiety0.30.50.9-1.00.60.5
Tail length0.31.63.3-1.80.9-0.8
Length with tail1.04.47.1-2.72.40.4
Length without tail1.47.110.4-3.13.21.2
Times rat made contact with spout0.30.40.9-0.90.2-0.5
Lifetime Intake2.53.15.02.2-1.01.8
Liver weight, left0.71.22.11.0-1.4-0.7
Liver weight, right0.91.62.71.4-1.70.4
Locomotor activity0.40.71.6-0.0-1.3-0.7
Locomotor testing distance0.20.61.70.1-1.3-0.3
Locomotor testing rearing0.20.81.90.4-1.4-0.4
Locomotion in novel chamber1.82.44.62.1-1.60.2
Locomotion in novel chamber post-restriction0.82.43.61.9-1.8-0.7
Fecal boli incidents, locomotor time 10.20.41.01.0-0.3-0.4
Change in fecal boli incidents, locomotor task0.50.61.40.6-1.20.1
Time >=10cm from walls, locomotor time 12.12.65.92.4-1.30.3
Bouts of movement, locomotor time 11.52.04.4-1.20.5-2.1
Total resting periods, locomotor time 11.21.43.1-0.90.5-1.8
Rest time, locomotor task time 11.01.72.31.2-1.5-1.2
Distance moved, locomotor task time 10.20.50.8-0.30.70.9
Vertical activity count, locomotor time 10.00.30.50.7-0.60.1
Time >=10cm from walls, locomotor time 20.10.20.50.5-0.1-0.7
Bouts of movement, locomotor time 20.31.01.7-1.31.20.0
Total resting periods, locomotor time 20.10.50.7-0.80.8-0.0
Rest time, locomotor task time 21.62.64.01.8-2.0-0.7
Distance moved, locomotor task time 20.60.71.2-1.10.8-0.6
Vertical activity count, locomotor time 20.20.50.9-0.8-0.1-1.0
Light reinforcement 10.00.20.5-0.1-0.1-0.7
Light reinforcement 20.30.72.11.4-0.10.4
Bone: marrow area2.15.18.22.9-1.52.2
Bone: maximum diameter0.40.71.50.70.51.2
Bone: maximum force1.93.86.2-0.62.22.5
Bone: maximum moment1.93.65.6-0.72.22.4
Mean time between licks in bursts0.10.81.8-1.30.50.7
Mean num. licks in bursts0.10.20.5-0.3-0.1-0.7
Cd content in liver0.80.91.71.3-0.9-0.3
Co content in liver0.91.12.4-0.3-0.9-1.5
Cu content in liver0.10.10.3-0.3-0.1-0.6
Fe content in liver0.00.00.00.2-0.20.2
K content in liver0.50.41.0-0.40.51.0
Mg content in liver0.40.41.30.0-0.11.1
Mn content in liver1.92.13.9-1.42.00.6
Na content in liver0.30.30.4-0.40.70.6
Rb content in liver1.61.94.01.2-2.0-0.4
Se content in liver0.10.10.20.40.30.3
Sr content in liver2.82.44.2-1.82.00.2
Zn content in liver1.72.03.0-1.51.70.9
Bone: minimum diameter1.73.35.12.3-0.92.0
Time in familiar zone, hab. session 10.20.20.5-0.10.30.7
Time in novel zone, hab. session 10.80.91.50.6-1.2-0.8
Total zone transitions, hab. session 10.10.20.4-0.60.40.0
Total locomotion distance, hab. session 10.40.50.80.8-0.30.9
Locomotion velocity, hab. session 10.10.20.50.20.20.7
Time in familiar zone, hab. session 20.50.51.3-0.4-0.4-1.2
Time in novel zone, hab. session 20.70.71.8-0.00.61.3
Total zone transitions, hab. session 21.11.41.6-1.11.21.2
Total locomotion distance, hab. session 20.30.41.30.00.21.1
Locomotion velocity, hab. session 20.40.61.50.30.01.2
Novel to familiar place preference ratio0.91.22.2-0.91.50.8
Novelty place preference0.50.71.3-0.61.10.6
Time in novel zone, NPP test0.60.81.4-0.71.20.7
Total zone transitions, NPP test0.71.01.3-1.21.10.7
Total locomotion distance, NPP test0.10.20.5-0.10.00.7
Locomotion velocity, NPP test0.00.00.1-0.0-0.10.4
Intraocular pressure0.30.51.30.0-0.4-1.2
Delta distance traveled before/after self-admin0.40.40.7-0.4-0.6-0.8
Delta ambulatory time before/after self-admin0.40.71.1-0.2-0.9-1.0
Parametrial fat weight2.15.19.83.1-1.81.4
Pavlov. Cond. lever latency0.91.11.80.5-1.2-1.3
Pavlov. Cond. magazine entry latency0.81.11.7-0.21.31.2
Pavlov. Cond. change in total contacts0.30.30.50.30.70.5
Pavlov. Cond. index score0.40.61.2-0.41.10.6
Pavlov. Cond. latency score0.50.61.0-0.31.00.9
Pavlov. Cond. lever contacts0.60.71.5-0.20.81.2
Pavlov. Cond. magazine entry number0.50.61.40.5-1.2-0.0
Pavlov. Cond. intertrial magazine entries0.30.41.1-0.10.2-1.0
Pavlov. Cond. lever-magazine prob. diff.0.50.61.2-0.31.10.6
Pavlov. Cond. response bias0.50.71.5-0.41.20.6
Pavlov. Cond. lever latency0.40.50.90.4-0.9-0.7
Pavlov. Cond. magazine entry latency2.94.17.4-2.12.70.6
Pavlov. Cond. change in total contacts0.41.12.6-0.61.60.5
Pavlov. Cond. index score1.42.24.5-1.22.10.8
Pavlov. Cond. latency score1.21.94.0-1.02.00.9
Pavlov. Cond. lever contacts0.30.40.8-0.40.90.4
Pavlov. Cond. magazine entry number4.66.011.12.5-3.3-0.8
Pavlov. Cond. intertrial magazine entries0.81.72.31.3-1.5-1.0
Pavlov. Cond. lever-magazine prob. diff.1.72.55.2-1.32.30.8
Pavlov. Cond. response bias1.31.83.4-1.21.80.8
Time in closed arm before self-admin0.20.30.70.9-0.20.2
Time in closed arm after self-admin0.60.61.30.8-1.1-0.0
Time in open arm before self-admin0.40.51.2-0.3-1.1-0.3
Time in open arm after self-admin0.60.61.3-1.10.8-0.1
Bone: periosteal estimation0.81.93.71.40.01.9
Bone: periosteal perimeter0.51.01.71.10.11.3
Bone: post-yield work2.13.66.62.00.02.6
Progressive ratio test 1 active lever presses0.40.81.51.2-0.60.6
Progressive ratio test 1 breakpoint0.40.71.61.2-0.60.5
Progressive ratio test 1 inactive lever presses0.30.71.4-0.20.71.2
Progressive ratio test 2 active lever presses1.52.14.72.2-1.00.8
Progressive ratio test 2 breakpoint1.62.04.52.1-0.90.9
Progressive ratio test 2 inactive lever presses0.62.04.32.1-0.81.1
Incentive Sensitization - Responses0.41.02.30.40.81.5
Incentive Sensitization - Breakpoint0.41.02.20.60.71.5
Sum of active levers in priming session hrs 5-61.11.11.4-0.61.2-1.2
Progressive ratio0.20.71.30.9-0.21.1
Food seeking constrained by brief footshock0.00.00.10.1-0.30.1
Seeking ratio, punishment vs. effort0.10.20.5-0.7-0.1-0.3
Retroperitoneal fat weight2.812.620.04.5-4.20.6
Reaction time number correct0.20.71.6-1.20.7-0.0
Reaction time mean minus median0.10.50.8-0.30.9-0.7
Reaction time mean minus median AUC0.10.71.7-0.50.5-1.3
Reaction time num false alarms0.20.40.6-0.6-0.6-0.8
Reaction time num false alarms AUC0.30.71.4-1.2-0.1-0.9
Reaction time trials correct on left0.20.71.6-1.20.7-0.0
Reaction time trials on left0.20.81.7-1.30.8-0.1
Reaction time mean0.10.30.60.30.1-0.8
Reaction time mean AUC0.10.30.70.5-0.1-0.8
Median of all reaction times0.10.10.10.40.1-0.4
Reaction time omissions0.50.81.0-0.90.8-1.0
Reaction time false alarm rate0.10.20.3-0.2-0.5-0.4
Reaction time premature initiation rate3.35.16.0-2.42.41.9
Reaction time premature initiations2.16.410.2-3.22.71.2
Std. dev. reaction times0.20.82.20.10.1-1.5
Reaction time trials completed0.20.81.7-1.30.8-0.1
Reaction time trials AUC0.20.61.4-1.20.7-0.0
Run reversals in cocaine runway, females0.91.02.7-0.40.41.6
Run reversals in cocaine runway, males0.40.40.60.3-0.7-0.7
Latency to leave start box in cocaine runway0.71.01.51.2-0.80.9
Latency to leave start box in cocaine runway, F0.10.10.40.10.10.6
Latency to leave start box in cocaine runway, M1.91.83.01.7-1.50.4
Std. dev. time between licks in bursts0.10.10.2-0.5-0.40.2
Total sessions with >9 infusions0.81.01.81.4-1.00.5
Short access day 1 total inactive lever presses0.40.71.70.7-0.21.3
Short access day 10 total inactive lever presses0.10.50.80.5-0.9-0.6
Short access day 1 total infusions0.91.72.91.7-1.30.7
Short access day 10 total infusions1.42.43.91.7-0.52.0
Short access total infusions1.41.92.51.5-0.91.6
Short access day 1 locomotion0.50.81.41.2-0.50.8
Short access day 10 total locomotion0.41.53.21.10.21.8
Short access total locomotion0.91.32.01.4-0.31.4
One hour access (0.3 mA shock)2.12.55.02.2-1.11.1
Compulsive drug intake1.31.94.4-2.10.9-0.7
One hour access (shock baseline)2.15.411.83.4-2.00.7
Social response proportion0.00.00.1-0.3-0.10.1
Social responses0.40.61.1-0.80.1-1.0
Social time0.30.40.8-0.6-0.2-0.9
Soleus weight1.95.79.92.5-3.1-0.9
Bone: stiffness0.30.61.1-0.11.10.9
Tibialis anterior weight5.920.334.0-5.05.81.5
Time to tail flick, vehicle, before self-admin0.60.71.80.50.41.3
Time to tail flick, vehicle, after self-admin0.30.51.3-0.20.51.2
Time to tail flick, test, before self-admin1.31.54.30.10.52.1
Time to tail flick, test, after self-admin0.00.00.00.10.2-0.1
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.70.40.1
Delta time to tail flick, test, before/after SA1.11.33.7-0.40.0-1.9
Tibia length0.61.63.9-0.72.00.8
Ambulatory time before self-admin0.41.22.8-0.61.70.6
Ambulatory time after self-admin0.10.10.3-0.10.60.0
Bone: tissue strength0.20.20.50.2-0.7-0.2
Total heroin consumption4.85.68.4-2.92.9-0.3
Bone: trabecular number1.01.83.0-0.41.51.7
Bone: trabecular spacing0.60.91.7-0.2-0.9-1.3
Bone: trabecular thickness0.20.20.60.8-0.20.1
Bone: trabecular tissue density2.95.17.91.9-2.8-1.9
Water consumed over 24 hours0.40.71.6-1.30.7-0.2
Number of responses in last shaping day0.20.20.5-0.70.30.3