LOC134483869

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC134483869 0.04 0.03 7.0e-05 0.03 0.02 0.02 0.03 5.0e-06 1.4e-04 1.1e-04 9.5e-06
2 Adipose gene expression LOC134483869 0.02 0.02 2.5e-03 0.02 0.02 0.02 0.02 3.7e-03 5.0e-03 4.6e-03 5.8e-03
3 OFC gene expression LOC134483869 0.5 0.28 1.3e-04 0.17 0.15 0.17 0.15 9.1e-05 2.6e-04 8.2e-05 2.3e-04
4 BLA gene expression LOC134483869 0.07 0.07 7.7e-03 0.04 0.03 0.02 0.03 3.3e-03 1.1e-02 2.4e-02 7.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.11.8-1.01.01.40.8
Area under the delay curve1.41.73.41.9-1.3-0.9-1.0
BMI with tail2.79.210.73.3-3.0-3.2-2.6
BMI without tail2.47.37.62.8-2.7-2.8-2.6
Body weight6.126.827.85.3-5.1-5.0-5.3
Weight adjusted by age1.31.94.21.4-0.8-2.1-0.9
Bone surface0.00.00.00.20.00.1-0.1
Bone volume0.00.00.10.2-0.10.2-0.3
Breakpoint value in progressive ratio session0.00.00.0-0.20.20.1-0.0
Number of licking bursts0.30.50.7-0.70.80.70.7
Context. condit. distance diff. score0.10.20.5-0.10.40.20.7
Locomotion velocity, session 10.80.81.1-0.90.91.10.8
Locomotion distance, session 13.54.44.9-2.22.02.12.1
Locomotion velocity, session 20.30.30.3-0.40.60.60.6
Locomotion distance, session 20.91.31.8-1.41.00.91.2
Locomotion velocity, session 30.30.30.70.4-0.6-0.1-0.8
Locomotion distance, session 30.30.30.6-0.60.30.80.5
Stereotopy head waving bouts, day 31.92.32.41.4-1.5-1.5-1.6
Stereotopy head waving duration, day 30.30.30.60.6-0.4-0.8-0.3
Locomotion velocity, session 70.20.20.4-0.60.10.60.1
Locomotion distance, session 71.11.42.0-1.41.01.40.9
Stereotopy head waving bouts, day 71.01.11.61.0-1.1-0.8-1.2
Stereotopy head waving duration, day 71.01.21.71.0-1.1-0.9-1.3
Locomotion velocity, session 80.00.00.10.3-0.0-0.10.1
Locomotion distance, session 80.71.01.5-0.91.00.81.2
Degree of sensitization distance0.00.00.1-0.00.1-0.20.1
Degree of sensitization stereotypy0.00.00.1-0.10.10.3-0.2
Conditioned locomotion2.32.73.41.5-1.6-1.6-1.8
Cocaine response after cond. corrected1.41.72.91.5-1.1-1.7-0.7
Cocaine response after cond. not corrected1.31.62.41.5-1.1-1.6-0.7
Cocaine response before conditioning0.10.10.2-0.30.00.5-0.1
Saline control response0.30.40.60.5-0.7-0.6-0.8
Bone: connectivity density0.50.71.2-0.80.91.10.6
Bone: cortical apparent density0.10.10.2-0.30.20.50.1
Bone: cortical area0.40.61.31.1-0.7-0.9-0.2
Bone: cortical porosity0.00.00.00.10.0-0.10.0
Bone: cortical porosity0.00.00.00.1-0.0-0.20.1
Bone: cortical thickness0.20.30.7-0.10.60.40.8
Bone: cortical thickness0.00.00.2-0.4-0.1-0.00.0
Bone: cortical tissue density0.00.10.2-0.20.10.4-0.0
Condit. Reinf. active minus inactive responses0.91.01.4-1.01.01.20.9
Condit. Reinf. active-inactive response ratio0.00.00.1-0.10.10.30.3
Condit. Reinf. active responses0.40.40.9-0.70.60.90.3
Condit. Reinf. inactive responses0.60.71.2-0.90.81.10.3
Incentive salience index mean0.30.40.6-0.60.70.80.5
Condit. Reinf. lever presses0.00.00.00.00.10.10.0
Condit. Reinf. active minus inactive responses0.71.01.1-1.11.01.00.8
Condit. Reinf. active-inactive response ratio0.20.30.6-0.50.80.30.4
Condit. Reinf. active responses0.81.11.3-1.20.81.10.9
Condit. Reinf. inactive responses0.10.10.2-0.2-0.50.3-0.1
Condit. Reinf. lever presses4.25.86.9-2.62.02.52.5
Condit. Reinf. lever reinforcers received1.42.02.4-1.51.21.51.4
Conditioned reinforcement - actives0.30.50.80.5-0.9-0.7-0.7
Conditioned reinforcement - inactives0.10.10.2-0.50.20.20.1
Conditioned locomotion1.21.61.91.1-1.4-1.2-1.4
Patch foraging indifference point 0 sec0.20.40.70.3-0.8-0.6-0.6
Patch foraging indifference point AUC0.20.40.8-0.90.40.40.5
Delay disc. indifference point, 0s delay0.50.61.01.0-0.6-1.0-0.2
Delay disc. indifference point, 16s delay0.50.61.71.3-0.70.1-0.6
Delay disc. indifference point, 2s delay0.00.10.10.10.2-0.00.4
Delay disc. indifference point, 24s delay2.93.25.82.4-1.7-1.4-1.5
Delay disc. indifference point, 4s delay1.81.92.71.7-1.4-1.3-1.1
Delay disc. indifference point, 8s delay1.82.22.81.7-1.6-1.1-1.4
Indifference point function ln k0.10.10.2-0.20.40.30.3
Indifference point function log k0.10.10.2-0.20.40.30.3
Patch foraging total patch changes 0 sec0.20.30.60.2-0.8-0.6-0.5
Patch foraging total patch changes 12 sec0.10.10.3-0.6-0.1-0.20.2
Patch foraging total patch changes 18 sec0.40.61.30.6-1.1-0.6-0.7
Patch foraging total patch changes 24 sec0.20.40.6-0.80.40.40.7
Patch foraging total patch changes 6 sec0.10.10.30.1-0.6-0.4-0.2
Patch foraging time to switch 0 sec1.02.02.81.7-1.5-1.4-1.1
Patch foraging water rate 0 sec0.20.30.8-0.90.60.10.4
Patch foraging water rate 12 sec0.10.20.4-0.70.40.40.3
Patch foraging water rate 18 sec0.40.61.0-0.90.71.00.5
Patch foraging water rate 24 sec0.30.50.7-0.90.60.60.6
Patch foraging water rate 6 sec0.10.10.2-0.40.40.20.2
Seeking ratio, delayed vs. immediate footshock0.30.41.30.6-0.01.1-0.3
Distance traveled before self-admin0.60.81.00.6-0.9-0.9-1.0
Distance traveled after self-admin0.10.10.30.3-0.1-0.2-0.6
Extensor digitorum longus weight0.31.01.1-1.11.00.91.0
Bone: elastic displacement0.00.00.00.00.10.10.2
Bone: elastic work0.10.10.20.5-0.4-0.30.0
Bone: endosteal estimation3.37.38.42.7-2.9-2.7-2.6
Bone: endosteal perimeter2.24.65.32.3-2.1-2.3-1.8
Epididymis fat weight0.82.63.21.7-1.7-1.8-1.4
Delta time in closed arm before/after self-admin3.23.05.21.6-1.6-2.3-1.2
Delta time in open arm before/after self-admin1.01.01.7-1.00.81.30.7
Diff in mean of infusions in LGA sessions0.30.40.6-0.70.70.40.7
Delay discount exponential model param1.31.43.0-1.71.10.70.9
Extinction: sum of active levers before priming0.20.30.6-0.50.2-0.80.3
Active lever presses in extinction session 60.00.00.10.2-0.30.10.1
Bone: final force4.16.67.32.7-2.7-2.5-2.3
Bone: final moment3.55.76.72.5-2.6-2.4-2.0
Food consumed during 24 hour testing period0.60.91.21.0-0.9-1.1-0.7
Glucose0.10.20.40.4-0.0-0.60.3
Heart weight1.01.62.5-1.11.60.51.5
Delay discount hyperbolic model param0.90.92.2-1.50.90.60.6
Intermittent access intake day 1-15 change0.20.51.00.5-0.9-0.2-1.0
Intermittent access intake escalation0.30.61.10.5-1.0-0.0-1.1
Intermittent access intake escalation 20.10.10.3-0.1-0.10.5-0.4
Intermitt. access day 1 inactive lever presses0.41.42.3-1.51.30.41.2
Intermitt. access day 15 inactive lever presses0.20.40.90.4-0.6-0.2-1.0
Intermitt. access escalation Index0.40.60.7-0.50.80.80.8
Intermittent access day 1 total infusions0.40.60.9-0.60.80.90.8
Intermittent access day 15 total infusions0.10.10.30.1-0.20.6-0.1
Intermittent access terminal intake (last 3 days)0.00.00.10.2-0.20.1-0.3
Intermittent access total infusions0.10.20.5-0.20.20.70.2
Intermittent access day 1 locomotion0.10.20.20.4-0.4-0.2-0.5
Intermittent access day 15 total locomotion2.64.66.92.1-2.2-1.5-2.6
Intermittent access total locomotion0.91.11.71.1-1.1-0.4-1.3
Intermittent access standard deviation0.81.72.21.1-1.5-1.4-1.3
Left kidney weight3.214.816.03.8-3.9-3.6-4.0
Right kidney weight5.625.429.44.9-5.4-4.5-5.3
Cocaine induced anxiety0.20.20.4-0.50.50.70.1
Post-drug Anxiety0.40.40.7-0.50.60.90.3
Baseline Anxiety0.10.20.50.2-0.1-0.70.2
Tail length0.83.35.21.5-1.8-1.5-2.3
Length with tail2.18.912.52.8-2.9-2.6-3.5
Length without tail3.110.110.53.2-3.1-3.2-3.2
Times rat made contact with spout3.84.35.7-2.41.92.21.7
Lifetime Intake0.00.00.00.2-0.20.1-0.1
Liver weight, left1.93.13.91.7-2.0-1.7-1.6
Liver weight, right2.95.15.72.4-2.3-2.3-2.1
Locomotor activity0.10.10.30.2-0.6-0.2-0.3
Locomotor testing distance0.00.10.2-0.0-0.2-0.50.1
Locomotor testing rearing0.71.31.41.1-1.2-1.2-1.1
Locomotion in novel chamber0.20.30.7-0.10.70.40.8
Locomotion in novel chamber post-restriction1.62.72.81.7-1.7-1.6-1.6
Fecal boli incidents, locomotor time 10.00.10.10.3-0.30.1-0.0
Change in fecal boli incidents, locomotor task1.71.75.30.7-0.7-2.3-0.6
Time >=10cm from walls, locomotor time 12.12.24.41.3-1.2-2.1-1.2
Bouts of movement, locomotor time 10.40.40.9-0.60.41.00.4
Total resting periods, locomotor time 10.10.20.5-0.40.20.70.1
Rest time, locomotor task time 10.10.10.20.3-0.3-0.4-0.3
Distance moved, locomotor task time 10.10.10.30.3-0.2-0.5-0.4
Vertical activity count, locomotor time 10.30.70.80.9-0.8-0.8-0.8
Time >=10cm from walls, locomotor time 25.48.014.72.4-2.5-3.8-2.3
Bouts of movement, locomotor time 20.00.00.10.2-0.20.2-0.2
Total resting periods, locomotor time 20.00.10.1-0.10.20.40.2
Rest time, locomotor task time 20.00.00.10.30.0-0.10.0
Distance moved, locomotor task time 22.12.53.41.1-1.5-1.8-1.7
Vertical activity count, locomotor time 20.91.22.10.8-1.0-1.4-1.1
Light reinforcement 11.43.54.41.8-1.8-2.1-1.8
Light reinforcement 22.23.44.42.1-1.9-1.6-1.7
Bone: marrow area3.57.68.82.7-3.0-2.7-2.6
Bone: maximum diameter0.61.11.81.4-0.9-1.1-0.6
Bone: maximum force1.42.53.01.7-1.7-1.5-1.3
Bone: maximum moment1.11.92.41.5-1.6-1.4-1.0
Mean time between licks in bursts0.51.21.2-1.11.11.11.0
Mean num. licks in bursts0.30.50.8-0.90.50.80.5
Cd content in liver0.00.00.1-0.1-0.10.2-0.3
Co content in liver2.02.42.71.4-1.5-1.6-1.6
Cu content in liver3.13.74.2-2.02.01.81.8
Fe content in liver1.62.02.71.3-1.4-1.2-1.7
K content in liver0.90.81.1-1.00.90.70.9
Mg content in liver0.90.91.4-0.91.10.61.2
Mn content in liver0.00.00.10.00.0-0.30.0
Na content in liver0.30.40.6-0.80.70.60.2
Rb content in liver0.00.00.0-0.1-0.0-0.20.2
Se content in liver1.51.82.1-1.31.51.21.4
Sr content in liver0.00.00.0-0.10.20.10.1
Zn content in liver0.30.31.0-0.30.40.21.0
Bone: minimum diameter2.13.85.52.4-1.8-2.2-1.2
Time in familiar zone, hab. session 10.00.00.10.2-0.00.30.1
Time in novel zone, hab. session 10.30.30.50.4-0.5-0.7-0.6
Total zone transitions, hab. session 13.24.55.6-2.42.31.91.9
Total locomotion distance, hab. session 12.02.93.7-1.91.81.51.6
Locomotion velocity, hab. session 11.92.73.4-1.81.81.31.5
Time in familiar zone, hab. session 21.21.31.6-1.11.11.11.3
Time in novel zone, hab. session 21.31.31.90.8-1.4-1.0-1.3
Total zone transitions, hab. session 20.50.61.1-1.10.70.50.7
Total locomotion distance, hab. session 22.53.34.6-2.11.71.51.8
Locomotion velocity, hab. session 23.04.15.6-2.41.91.72.0
Novel to familiar place preference ratio0.40.51.00.6-0.6-1.0-0.5
Novelty place preference0.30.40.80.5-0.5-0.9-0.5
Time in novel zone, NPP test0.40.40.70.5-0.6-0.8-0.6
Total zone transitions, NPP test1.52.12.5-1.61.41.31.6
Total locomotion distance, NPP test1.31.82.3-1.51.21.11.4
Locomotion velocity, NPP test1.92.73.5-1.91.61.31.8
Intraocular pressure1.11.62.51.4-1.6-0.8-1.2
Delta distance traveled before/after self-admin0.40.40.7-0.50.80.50.7
Delta ambulatory time before/after self-admin0.30.40.8-0.50.90.60.5
Parametrial fat weight2.86.69.82.2-3.0-1.8-3.1
Pavlov. Cond. lever latency0.30.40.60.6-0.8-0.5-0.7
Pavlov. Cond. magazine entry latency0.40.50.8-0.70.40.60.9
Pavlov. Cond. change in total contacts0.50.50.60.7-0.8-0.6-0.8
Pavlov. Cond. index score0.10.10.3-0.20.10.10.5
Pavlov. Cond. latency score0.00.00.2-0.10.0-0.10.4
Pavlov. Cond. lever contacts0.10.10.1-0.20.40.10.3
Pavlov. Cond. magazine entry number0.70.91.40.9-0.7-0.8-1.2
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.10.40.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.30.10.10.4
Pavlov. Cond. response bias0.70.91.0-0.90.91.01.0
Pavlov. Cond. lever latency2.33.14.22.0-1.3-2.0-1.7
Pavlov. Cond. magazine entry latency0.10.10.30.0-0.5-0.0-0.4
Pavlov. Cond. change in total contacts1.11.72.2-1.51.01.51.2
Pavlov. Cond. index score0.60.81.3-1.20.51.10.7
Pavlov. Cond. latency score0.40.60.9-1.00.40.90.5
Pavlov. Cond. lever contacts1.92.63.6-1.91.21.91.5
Pavlov. Cond. magazine entry number0.10.10.10.30.3-0.20.2
Pavlov. Cond. intertrial magazine entries0.60.91.1-1.10.90.90.9
Pavlov. Cond. lever-magazine prob. diff.0.40.61.0-1.00.41.00.5
Pavlov. Cond. response bias1.01.42.1-1.40.71.50.9
Time in closed arm before self-admin0.40.50.9-0.60.90.30.9
Time in closed arm after self-admin0.30.31.00.3-0.1-1.00.4
Time in open arm before self-admin0.10.10.3-0.40.30.50.1
Time in open arm after self-admin1.21.43.0-1.11.01.70.5
Bone: periosteal estimation2.14.45.32.3-2.2-2.2-1.7
Bone: periosteal perimeter1.01.72.41.6-1.3-1.4-0.9
Bone: post-yield work0.30.40.60.8-0.7-0.6-0.5
Progressive ratio test 1 active lever presses0.10.10.20.0-0.1-0.50.1
Progressive ratio test 1 breakpoint0.00.10.2-0.10.1-0.40.2
Progressive ratio test 1 inactive lever presses0.30.50.70.5-0.7-0.6-0.8
Progressive ratio test 2 active lever presses0.00.00.0-0.2-0.20.0-0.1
Progressive ratio test 2 breakpoint0.00.00.1-0.2-0.10.10.0
Progressive ratio test 2 inactive lever presses0.10.10.3-0.50.20.40.1
Incentive Sensitization - Responses0.81.11.5-1.20.91.20.9
Incentive Sensitization - Breakpoint0.50.71.1-0.90.61.10.6
Sum of active levers in priming session hrs 5-60.20.20.4-0.60.60.40.1
Progressive ratio2.03.24.01.9-1.9-1.1-2.0
Food seeking constrained by brief footshock0.10.10.20.30.10.30.5
Seeking ratio, punishment vs. effort1.11.62.7-1.21.40.61.7
Retroperitoneal fat weight1.04.35.42.0-2.3-1.8-2.1
Reaction time number correct0.30.61.20.4-0.9-0.2-1.1
Reaction time mean minus median0.10.20.40.0-0.40.4-0.6
Reaction time mean minus median AUC0.10.20.30.4-0.60.2-0.5
Reaction time num false alarms0.50.71.8-1.30.70.60.4
Reaction time num false alarms AUC1.21.83.4-1.81.31.01.0
Reaction time trials correct on left0.30.61.20.4-0.9-0.2-1.1
Reaction time trials on left0.30.51.20.4-0.9-0.1-1.1
Reaction time mean0.20.30.50.5-0.7-0.4-0.5
Reaction time mean AUC0.40.71.10.8-1.0-0.5-0.8
Median of all reaction times0.30.40.60.7-0.8-0.7-0.5
Reaction time omissions0.00.10.10.2-0.10.3-0.3
Reaction time false alarm rate1.72.33.1-1.81.71.01.6
Reaction time premature initiation rate0.10.20.4-0.30.60.10.5
Reaction time premature initiations0.00.00.10.1-0.0-0.1-0.3
Std. dev. reaction times0.00.10.10.2-0.20.4-0.3
Reaction time trials completed0.30.51.20.4-0.9-0.1-1.1
Reaction time trials AUC0.30.51.20.4-0.9-0.1-1.1
Run reversals in cocaine runway, females0.20.20.40.3-0.6-0.0-0.5
Run reversals in cocaine runway, males0.50.51.10.2-0.31.0-0.9
Latency to leave start box in cocaine runway0.50.61.1-0.51.1-0.60.9
Latency to leave start box in cocaine runway, F0.30.40.6-0.10.7-0.70.8
Latency to leave start box in cocaine runway, M0.10.10.2-0.20.5-0.50.1
Std. dev. time between licks in bursts0.91.22.51.2-0.9-1.6-0.2
Total sessions with >9 infusions0.00.00.00.0-0.0-0.00.2
Short access day 1 total inactive lever presses0.10.10.20.1-0.20.0-0.5
Short access day 10 total inactive lever presses0.40.91.3-1.10.91.00.6
Short access day 1 total infusions0.20.30.6-0.70.60.20.5
Short access day 10 total infusions0.20.30.9-0.30.31.00.2
Short access total infusions0.00.00.0-0.1-0.0-0.00.0
Short access day 1 locomotion0.10.10.2-0.20.3-0.30.4
Short access day 10 total locomotion0.20.40.7-0.80.4-0.80.4
Short access total locomotion0.20.20.7-0.10.1-0.80.2
One hour access (0.3 mA shock)2.42.73.3-1.81.61.61.6
Compulsive drug intake1.82.13.3-1.41.80.81.5
One hour access (shock baseline)0.20.20.9-0.2-0.10.90.0
Social response proportion0.10.10.20.3-0.1-0.40.1
Social responses0.10.10.20.30.0-0.40.3
Social time0.20.30.3-0.50.60.60.3
Soleus weight0.61.83.01.6-1.0-1.7-0.8
Bone: stiffness1.11.82.21.4-1.5-1.2-1.2
Tibialis anterior weight0.61.92.3-1.31.51.21.4
Time to tail flick, vehicle, before self-admin1.81.83.01.4-1.5-0.4-1.7
Time to tail flick, vehicle, after self-admin0.40.50.7-0.60.80.50.8
Time to tail flick, test, before self-admin0.50.51.0-0.40.61.00.7
Time to tail flick, test, after self-admin0.50.51.9-0.40.11.40.1
Delta time to tail flick, vehicle, before/after SA1.91.83.1-1.21.31.01.8
Delta time to tail flick, test, before/after SA0.60.71.00.7-1.0-0.5-1.0
Tibia length2.46.68.72.5-2.5-2.3-3.0
Ambulatory time before self-admin0.10.10.10.1-0.4-0.3-0.4
Ambulatory time after self-admin0.10.10.2-0.30.40.4-0.1
Bone: tissue strength0.00.00.10.2-0.1-0.1-0.0
Total heroin consumption1.01.21.7-1.11.21.30.5
Bone: trabecular number1.01.62.3-1.21.31.51.0
Bone: trabecular spacing1.82.42.71.5-1.5-1.6-1.5
Bone: trabecular thickness0.20.30.50.5-0.7-0.1-0.7
Bone: trabecular tissue density0.00.10.1-0.2-0.00.4-0.3
Water consumed over 24 hours0.70.91.4-0.71.10.71.2
Number of responses in last shaping day0.50.51.4-0.20.5-1.20.7