LOC134480868

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC134480868 0.02 0.02 3.9e-03 0.01 0.01 0.01 0.01 5.8e-02 2.5e-02 7.8e-02 6.5e-02
2 Adipose gene expression LOC134480868 0.06 0.04 1.1e-07 0.07 0.05 0.06 0.06 4.0e-08 2.5e-06 3.1e-07 2.1e-07
3 Liver intron excision ratio chr10_84489158_84489778 0.14 0.08 9.7e-11 0.09 0.09 0.07 0.09 3.4e-10 3.6e-10 1.0e-08 1.7e-10
4 Liver intron excision ratio chr10_84486693_84489778 0.09 0.05 1.1e-07 0.06 0.06 0.05 0.06 2.4e-07 9.3e-08 1.1e-06 2.1e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.93.8-1.92.00.3-0.6
Area under the delay curve0.50.60.8-0.90.7-0.50.8
BMI with tail2.17.39.63.1-2.72.9-1.9
BMI without tail1.23.84.92.1-1.92.2-1.5
Body weight4.419.227.45.2-5.14.1-2.7
Weight adjusted by age0.71.03.00.0-0.11.7-1.0
Bone surface0.71.22.90.10.21.3-1.7
Bone volume1.11.94.4-0.10.51.8-2.1
Breakpoint value in progressive ratio session0.00.10.1-0.10.10.4-0.2
Number of licking bursts0.81.33.30.10.61.3-1.8
Context. condit. distance diff. score2.12.64.10.7-1.6-1.72.0
Locomotion velocity, session 10.60.70.80.7-0.80.9-0.9
Locomotion distance, session 12.22.83.11.8-1.61.7-1.6
Locomotion velocity, session 20.10.10.20.3-0.4-0.10.1
Locomotion distance, session 21.01.42.80.5-0.11.7-1.6
Locomotion velocity, session 30.30.30.7-0.30.1-0.90.6
Locomotion distance, session 30.10.20.30.5-0.40.3-0.4
Stereotopy head waving bouts, day 32.22.54.0-2.01.5-1.41.4
Stereotopy head waving duration, day 30.30.30.6-0.70.2-0.50.7
Locomotion velocity, session 71.51.72.41.4-0.91.3-1.5
Locomotion distance, session 70.70.81.41.2-0.60.6-1.1
Stereotopy head waving bouts, day 70.40.51.2-1.10.80.00.2
Stereotopy head waving duration, day 70.30.41.0-1.00.5-0.10.5
Locomotion velocity, session 83.84.610.42.8-3.20.20.4
Locomotion distance, session 80.71.02.41.2-1.50.4-0.2
Degree of sensitization distance0.70.71.71.3-1.10.1-0.3
Degree of sensitization stereotypy0.40.41.0-1.00.80.3-0.0
Conditioned locomotion0.40.40.6-0.80.5-0.70.6
Cocaine response after cond. corrected0.81.01.8-0.80.81.3-0.9
Cocaine response after cond. not corrected1.01.22.0-0.80.91.4-1.1
Cocaine response before conditioning0.00.00.2-0.1-0.0-0.4-0.0
Saline control response0.50.70.90.8-1.00.9-0.6
Bone: connectivity density1.62.55.2-2.22.3-0.2-0.3
Bone: cortical apparent density4.46.07.7-2.82.4-2.61.9
Bone: cortical area0.00.10.2-0.30.20.1-0.4
Bone: cortical porosity0.50.60.8-0.60.60.9-0.8
Bone: cortical porosity0.60.61.5-0.20.21.2-0.9
Bone: cortical thickness0.91.52.4-1.61.1-1.11.0
Bone: cortical thickness3.84.58.9-3.02.3-1.41.4
Bone: cortical tissue density4.45.97.6-2.82.5-2.61.9
Condit. Reinf. active minus inactive responses1.41.51.9-1.41.2-1.11.2
Condit. Reinf. active-inactive response ratio2.12.23.0-1.51.2-1.71.5
Condit. Reinf. active responses1.01.21.7-1.31.2-0.91.0
Condit. Reinf. inactive responses0.10.20.3-0.20.40.6-0.4
Incentive salience index mean1.31.62.8-1.61.7-0.80.5
Condit. Reinf. lever presses0.60.91.9-1.01.40.1-0.7
Condit. Reinf. active minus inactive responses0.70.91.8-0.91.30.4-0.9
Condit. Reinf. active-inactive response ratio0.80.91.5-0.71.20.7-1.0
Condit. Reinf. active responses1.11.63.0-1.21.70.7-1.2
Condit. Reinf. inactive responses0.91.12.3-1.21.50.5-0.8
Condit. Reinf. lever presses0.10.10.2-0.40.4-0.30.2
Condit. Reinf. lever reinforcers received1.11.53.2-1.41.80.3-0.9
Conditioned reinforcement - actives0.00.10.10.00.3-0.3-0.2
Conditioned reinforcement - inactives0.20.20.7-0.20.4-0.80.4
Conditioned locomotion0.40.50.9-0.41.00.2-0.9
Patch foraging indifference point 0 sec0.91.72.5-1.31.6-1.50.3
Patch foraging indifference point AUC0.00.00.1-0.0-0.20.2-0.2
Delay disc. indifference point, 0s delay1.01.12.2-1.41.5-0.40.0
Delay disc. indifference point, 16s delay2.42.75.6-1.20.3-1.92.4
Delay disc. indifference point, 2s delay0.80.81.5-0.81.20.7-0.9
Delay disc. indifference point, 24s delay0.30.30.50.2-0.3-0.70.7
Delay disc. indifference point, 4s delay1.01.12.1-1.51.4-0.10.5
Delay disc. indifference point, 8s delay0.10.10.2-0.20.5-0.2-0.1
Indifference point function ln k0.40.71.5-0.2-0.1-1.21.2
Indifference point function log k0.40.71.5-0.2-0.1-1.21.2
Patch foraging total patch changes 0 sec0.61.01.8-0.91.2-1.30.1
Patch foraging total patch changes 12 sec2.33.06.2-2.12.5-0.0-1.2
Patch foraging total patch changes 18 sec0.20.30.4-0.20.7-0.3-0.7
Patch foraging total patch changes 24 sec0.40.71.2-1.11.1-0.2-0.3
Patch foraging total patch changes 6 sec0.71.01.9-1.31.4-0.8-0.1
Patch foraging time to switch 0 sec0.10.10.2-0.30.30.4-0.4
Patch foraging water rate 0 sec0.10.20.3-0.30.4-0.60.3
Patch foraging water rate 12 sec0.00.00.1-0.1-0.0-0.30.1
Patch foraging water rate 18 sec0.40.60.9-0.90.90.4-0.8
Patch foraging water rate 24 sec0.20.30.7-0.70.8-0.4-0.2
Patch foraging water rate 6 sec1.11.63.3-1.71.8-0.50.1
Seeking ratio, delayed vs. immediate footshock1.41.73.7-0.4-0.1-1.71.9
Distance traveled before self-admin0.30.30.8-0.50.40.9-0.4
Distance traveled after self-admin0.20.20.50.5-0.70.50.1
Extensor digitorum longus weight4.919.137.76.1-6.11.1-0.3
Bone: elastic displacement0.00.10.20.4-0.2-0.0-0.1
Bone: elastic work0.10.10.3-0.30.20.5-0.3
Bone: endosteal estimation2.55.66.32.5-2.02.4-2.4
Bone: endosteal perimeter1.42.94.32.1-1.61.4-1.7
Epididymis fat weight0.30.91.70.6-0.51.3-1.1
Delta time in closed arm before/after self-admin2.32.14.41.9-2.10.8-0.1
Delta time in open arm before/after self-admin0.30.30.9-0.2-0.2-0.40.9
Diff in mean of infusions in LGA sessions0.10.10.2-0.30.30.5-0.4
Delay discount exponential model param0.40.50.80.8-0.50.6-0.9
Extinction: sum of active levers before priming1.11.21.91.4-1.40.9-0.6
Active lever presses in extinction session 62.42.46.0-0.80.72.5-1.6
Bone: final force0.81.32.5-0.60.81.3-1.6
Bone: final moment0.71.22.4-0.40.61.4-1.5
Food consumed during 24 hour testing period0.40.61.11.0-1.00.4-0.4
Glucose0.40.61.20.2-0.21.0-1.1
Heart weight2.13.26.42.4-2.50.7-0.6
Delay discount hyperbolic model param0.30.40.50.7-0.60.4-0.7
Intermittent access intake day 1-15 change0.10.30.5-0.70.5-0.20.6
Intermittent access intake escalation0.10.30.4-0.60.4-0.30.7
Intermittent access intake escalation 20.10.10.10.3-0.30.3-0.0
Intermitt. access day 1 inactive lever presses0.62.14.3-2.11.5-0.81.1
Intermitt. access day 15 inactive lever presses1.12.32.7-1.61.7-1.61.2
Intermitt. access escalation Index0.60.92.40.9-1.50.70.1
Intermittent access day 1 total infusions0.10.10.2-0.1-0.1-0.40.3
Intermittent access day 15 total infusions0.50.71.5-0.60.0-0.91.2
Intermittent access terminal intake (last 3 days)0.50.71.1-0.70.3-1.01.0
Intermittent access total infusions0.50.61.1-0.4-0.0-1.01.1
Intermittent access day 1 locomotion0.00.00.20.10.0-0.4-0.1
Intermittent access day 15 total locomotion0.10.20.4-0.20.50.4-0.6
Intermittent access total locomotion0.40.50.9-0.81.0-0.60.3
Intermittent access standard deviation0.91.82.7-1.61.6-1.11.0
Left kidney weight0.10.51.60.6-1.30.10.4
Right kidney weight0.10.61.7-0.20.01.3-0.8
Cocaine induced anxiety1.21.73.01.5-1.71.2-0.1
Post-drug Anxiety0.30.30.60.6-0.80.20.6
Baseline Anxiety0.70.81.9-1.01.4-0.70.2
Tail length0.20.61.50.9-1.2-0.00.3
Length with tail1.14.78.12.7-2.81.6-1.0
Length without tail2.06.39.93.1-2.82.0-1.8
Times rat made contact with spout0.40.40.8-0.40.90.4-0.7
Lifetime Intake0.70.81.4-0.80.2-1.11.2
Liver weight, left0.60.91.50.9-0.61.1-1.2
Liver weight, right0.50.91.7-1.30.4-0.51.1
Locomotor activity0.81.32.3-0.71.01.2-1.5
Locomotor testing distance1.01.83.9-1.72.0-0.1-0.4
Locomotor testing rearing3.06.110.2-3.23.0-2.01.2
Locomotion in novel chamber2.32.96.0-2.52.3-0.20.3
Locomotion in novel chamber post-restriction0.50.91.5-0.40.91.2-1.1
Fecal boli incidents, locomotor time 10.30.50.91.0-0.60.6-0.5
Change in fecal boli incidents, locomotor task0.10.10.1-0.40.3-0.2-0.0
Time >=10cm from walls, locomotor time 10.40.51.2-0.40.2-1.10.7
Bouts of movement, locomotor time 10.20.30.60.5-0.30.8-0.3
Total resting periods, locomotor time 10.70.81.41.0-0.61.2-0.7
Rest time, locomotor task time 10.40.51.40.40.10.7-1.2
Distance moved, locomotor task time 10.30.41.1-0.5-0.2-0.41.1
Vertical activity count, locomotor time 10.10.10.30.4-0.60.10.0
Time >=10cm from walls, locomotor time 20.50.71.2-0.81.10.1-0.9
Bouts of movement, locomotor time 20.30.50.7-0.90.8-0.80.2
Total resting periods, locomotor time 20.30.50.8-0.70.6-0.90.4
Rest time, locomotor task time 20.40.60.91.0-0.90.6-0.5
Distance moved, locomotor task time 20.10.20.50.2-0.70.40.1
Vertical activity count, locomotor time 20.20.30.80.6-0.90.10.2
Light reinforcement 11.02.55.1-2.22.2-0.6-0.1
Light reinforcement 20.30.50.7-0.70.60.9-0.7
Bone: marrow area2.45.26.02.4-2.02.3-2.3
Bone: maximum diameter0.20.40.9-0.00.30.8-1.0
Bone: maximum force0.40.81.70.3-0.31.1-1.3
Bone: maximum moment0.50.81.50.5-0.51.1-1.2
Mean time between licks in bursts0.92.34.22.0-1.50.8-1.4
Mean num. licks in bursts0.50.82.0-0.50.1-1.01.4
Cd content in liver0.91.01.91.4-1.30.50.1
Co content in liver1.31.52.61.3-1.6-0.61.1
Cu content in liver0.70.81.9-0.50.2-1.01.4
Fe content in liver1.41.62.11.4-1.51.3-0.9
K content in liver1.61.53.0-1.71.1-0.91.1
Mg content in liver3.43.45.8-1.70.8-2.12.4
Mn content in liver1.92.13.1-1.51.2-1.81.2
Na content in liver1.11.22.6-0.70.71.6-1.2
Rb content in liver0.81.01.2-1.11.1-1.00.6
Se content in liver5.86.812.4-3.53.1-1.61.5
Sr content in liver1.00.82.0-0.1-0.2-1.41.2
Zn content in liver2.93.25.9-2.42.0-1.01.4
Bone: minimum diameter0.61.01.11.0-1.01.0-1.0
Time in familiar zone, hab. session 11.41.42.9-0.20.31.7-1.5
Time in novel zone, hab. session 12.12.14.2-0.70.6-2.11.9
Total zone transitions, hab. session 10.81.22.61.4-1.60.10.4
Total locomotion distance, hab. session 10.30.41.0-0.2-0.2-0.71.0
Locomotion velocity, hab. session 10.20.30.60.1-0.6-0.30.8
Time in familiar zone, hab. session 20.40.50.9-1.00.70.60.0
Time in novel zone, hab. session 20.20.20.6-0.20.4-0.80.1
Total zone transitions, hab. session 20.91.12.01.4-1.30.6-0.6
Total locomotion distance, hab. session 20.40.50.70.8-0.60.8-0.7
Locomotion velocity, hab. session 20.50.70.91.0-0.80.8-0.6
Novel to familiar place preference ratio0.50.51.10.4-0.9-0.51.0
Novelty place preference0.70.81.60.3-0.8-0.81.3
Time in novel zone, NPP test0.60.61.5-0.0-0.4-0.81.2
Total zone transitions, NPP test1.62.33.71.5-0.91.5-1.9
Total locomotion distance, NPP test0.60.81.80.6-0.41.0-1.3
Locomotion velocity, NPP test0.71.01.21.1-0.90.9-1.1
Intraocular pressure2.02.96.22.5-2.20.70.1
Delta distance traveled before/after self-admin0.80.81.61.0-1.3-0.30.8
Delta ambulatory time before/after self-admin0.80.91.81.3-1.40.5-0.0
Parametrial fat weight0.61.51.9-0.91.31.4-1.2
Pavlov. Cond. lever latency1.72.13.11.2-1.7-1.31.6
Pavlov. Cond. magazine entry latency4.86.112.6-3.43.60.3-0.6
Pavlov. Cond. change in total contacts5.76.011.0-3.33.0-1.51.2
Pavlov. Cond. index score4.05.010.6-2.83.30.6-1.1
Pavlov. Cond. latency score3.24.08.1-2.42.90.9-1.3
Pavlov. Cond. lever contacts2.22.64.0-1.32.01.3-1.7
Pavlov. Cond. magazine entry number5.87.414.93.8-3.90.5-0.1
Pavlov. Cond. intertrial magazine entries0.70.81.41.1-1.2-0.50.7
Pavlov. Cond. lever-magazine prob. diff.4.65.712.3-3.13.50.4-1.0
Pavlov. Cond. response bias4.86.012.4-3.43.5-0.2-0.3
Pavlov. Cond. lever latency0.30.40.80.7-0.9-0.30.6
Pavlov. Cond. magazine entry latency0.10.10.30.3-0.10.5-0.4
Pavlov. Cond. change in total contacts0.30.40.9-0.70.9-0.6-0.0
Pavlov. Cond. index score0.20.20.5-0.10.50.4-0.7
Pavlov. Cond. latency score0.20.20.5-0.00.30.5-0.7
Pavlov. Cond. lever contacts0.40.50.8-0.60.90.5-0.9
Pavlov. Cond. magazine entry number0.10.10.10.2-0.3-0.30.2
Pavlov. Cond. intertrial magazine entries0.91.41.91.0-1.4-1.21.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.4-0.00.30.4-0.6
Pavlov. Cond. response bias0.60.81.5-1.01.20.5-0.7
Time in closed arm before self-admin1.72.23.6-1.51.3-1.91.1
Time in closed arm after self-admin1.31.43.2-0.1-0.4-1.81.5
Time in open arm before self-admin1.01.11.21.0-1.01.1-0.9
Time in open arm after self-admin0.10.10.20.4-0.50.40.0
Bone: periosteal estimation0.81.72.91.0-0.71.6-1.7
Bone: periosteal perimeter1.42.43.51.4-1.11.7-1.9
Bone: post-yield work0.81.12.11.4-1.40.3-0.6
Progressive ratio test 1 active lever presses0.10.10.2-0.40.1-0.40.5
Progressive ratio test 1 breakpoint0.10.10.2-0.30.0-0.40.5
Progressive ratio test 1 inactive lever presses0.40.60.8-0.80.5-0.90.8
Progressive ratio test 2 active lever presses0.50.61.2-0.91.1-0.50.1
Progressive ratio test 2 breakpoint0.50.61.2-1.01.1-0.40.0
Progressive ratio test 2 inactive lever presses0.10.10.2-0.40.4-0.40.3
Incentive Sensitization - Responses0.60.92.1-0.91.50.0-0.7
Incentive Sensitization - Breakpoint0.60.81.9-0.81.40.1-0.7
Sum of active levers in priming session hrs 5-60.10.10.3-0.50.10.5-0.1
Progressive ratio0.20.30.4-0.40.50.7-0.6
Food seeking constrained by brief footshock0.30.40.5-0.70.70.4-0.5
Seeking ratio, punishment vs. effort0.10.20.30.1-0.3-0.50.5
Retroperitoneal fat weight0.00.10.1-0.40.30.0-0.3
Reaction time number correct0.61.11.41.2-1.00.8-1.1
Reaction time mean minus median0.10.31.01.0-0.60.0-0.1
Reaction time mean minus median AUC0.00.10.20.4-0.1-0.0-0.0
Reaction time num false alarms0.81.12.8-0.30.80.9-1.7
Reaction time num false alarms AUC0.91.44.0-0.10.71.1-2.0
Reaction time trials correct on left0.61.11.41.2-1.00.8-1.1
Reaction time trials on left0.51.01.41.2-1.00.8-1.1
Reaction time mean0.71.11.8-0.90.7-1.11.4
Reaction time mean AUC0.81.32.2-1.00.7-1.21.5
Median of all reaction times1.62.32.7-1.61.3-1.41.6
Reaction time omissions0.30.40.6-0.80.8-0.40.3
Reaction time false alarm rate0.60.91.4-0.71.10.5-1.2
Reaction time premature initiation rate0.70.92.0-1.41.00.20.8
Reaction time premature initiations0.10.10.2-0.40.10.50.2
Std. dev. reaction times0.00.00.10.10.1-0.10.2
Reaction time trials completed0.51.01.41.2-1.00.8-1.1
Reaction time trials AUC0.50.91.41.2-0.90.6-1.0
Run reversals in cocaine runway, females2.32.33.70.5-1.6-1.71.9
Run reversals in cocaine runway, males0.10.10.2-0.40.3-0.20.5
Latency to leave start box in cocaine runway0.80.92.01.2-1.4-0.40.1
Latency to leave start box in cocaine runway, F0.91.12.61.2-1.60.20.2
Latency to leave start box in cocaine runway, M0.30.31.1-0.20.2-1.00.2
Std. dev. time between licks in bursts0.40.61.50.6-0.10.7-1.2
Total sessions with >9 infusions1.41.83.7-0.80.3-1.91.6
Short access day 1 total inactive lever presses1.11.52.4-1.61.2-1.11.0
Short access day 10 total inactive lever presses0.00.00.0-0.00.2-0.20.1
Short access day 1 total infusions1.82.44.1-1.30.3-1.92.0
Short access day 10 total infusions0.40.50.7-0.80.5-0.80.6
Short access total infusions0.91.21.7-1.10.4-1.21.3
Short access day 1 locomotion1.21.42.1-1.40.8-1.41.0
Short access day 10 total locomotion0.40.71.8-0.91.3-0.0-0.6
Short access total locomotion0.20.20.6-0.40.3-0.80.2
One hour access (0.3 mA shock)0.10.10.20.4-0.4-0.40.3
Compulsive drug intake2.02.45.60.2-0.3-2.42.0
One hour access (shock baseline)0.00.00.1-0.30.00.3-0.0
Social response proportion0.20.30.70.5-0.90.10.1
Social responses0.20.30.70.00.10.7-0.8
Social time1.41.93.70.7-0.01.9-1.8
Soleus weight1.02.96.00.7-0.12.2-2.5
Bone: stiffness0.10.20.4-0.2-0.10.6-0.6
Tibialis anterior weight0.93.25.42.2-2.31.5-0.6
Time to tail flick, vehicle, before self-admin0.50.51.10.70.10.6-1.1
Time to tail flick, vehicle, after self-admin0.71.01.90.20.51.4-1.3
Time to tail flick, test, before self-admin0.60.61.01.0-0.80.9-0.3
Time to tail flick, test, after self-admin0.90.92.10.50.11.1-1.5
Delta time to tail flick, vehicle, before/after SA1.71.63.2-0.40.81.8-1.5
Delta time to tail flick, test, before/after SA0.80.81.7-1.01.3-0.2-0.6
Tibia length1.54.35.32.2-2.32.2-1.4
Ambulatory time before self-admin0.00.10.1-0.30.20.3-0.0
Ambulatory time after self-admin0.81.01.51.1-1.21.1-0.2
Bone: tissue strength1.11.12.41.5-1.30.0-0.6
Total heroin consumption2.52.93.7-1.51.81.6-1.9
Bone: trabecular number2.74.59.0-2.83.00.5-1.0
Bone: trabecular spacing1.82.33.11.8-1.51.7-1.1
Bone: trabecular thickness0.10.10.4-0.00.30.2-0.7
Bone: trabecular tissue density1.42.14.3-0.3-0.3-2.12.0
Water consumed over 24 hours0.40.51.00.8-0.40.5-1.0
Number of responses in last shaping day1.41.53.5-0.50.4-1.91.5