LOC134479263

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC134479263 0.07 0.06 8.7e-06 0.06 0.01 0.03 0.01 4.9e-06 3.1e-02 4.9e-04 2.8e-02
2 pVTA gene expression LOC134479263 0.11 0.07 3.7e-06 0.06 0.06 0.06 0.06 2.1e-05 2.2e-05 6.3e-06 9.3e-06
3 PL gene expression LOC134479263 0.02 0.02 8.5e-03 0.02 0.02 0.03 0.02 1.4e-03 1.9e-03 1.7e-04 1.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.40.30.60.1
Area under the delay curve1.72.74.1-1.3-1.5-2.0
BMI with tail2.17.29.9-3.1-3.0-1.6
BMI without tail1.05.16.1-2.5-2.5-1.8
Body weight0.94.04.82.21.91.8
Weight adjusted by age0.10.20.40.70.4-0.2
Bone surface0.20.30.4-0.5-0.5-0.7
Bone volume0.10.10.2-0.4-0.3-0.2
Breakpoint value in progressive ratio session0.50.91.20.91.10.8
Number of licking bursts0.41.31.6-1.2-1.3-0.8
Context. condit. distance diff. score2.73.24.12.01.71.6
Locomotion velocity, session 10.10.20.30.50.40.3
Locomotion distance, session 10.40.51.3-0.3-0.1-1.2
Locomotion velocity, session 20.20.30.3-0.6-0.6-0.3
Locomotion distance, session 20.60.80.9-0.9-1.0-0.8
Locomotion velocity, session 30.10.10.20.20.3-0.5
Locomotion distance, session 30.00.00.1-0.2-0.0-0.3
Stereotopy head waving bouts, day 30.10.10.20.30.30.5
Stereotopy head waving duration, day 30.10.10.20.40.20.4
Locomotion velocity, session 70.00.00.10.30.20.1
Locomotion distance, session 70.81.01.1-1.0-1.1-1.0
Stereotopy head waving bouts, day 72.02.33.31.81.80.7
Stereotopy head waving duration, day 71.51.92.71.61.70.6
Locomotion velocity, session 82.22.62.81.71.61.5
Locomotion distance, session 80.30.40.70.80.70.3
Degree of sensitization distance0.30.30.4-0.5-0.7-0.5
Degree of sensitization stereotypy1.01.11.51.21.20.6
Conditioned locomotion1.31.51.91.41.30.9
Cocaine response after cond. corrected0.30.40.90.20.5-0.9
Cocaine response after cond. not corrected0.20.30.7-0.5-0.2-0.8
Cocaine response before conditioning2.42.94.3-2.1-2.10.1
Saline control response0.20.30.50.60.70.3
Bone: connectivity density0.40.60.90.91.00.2
Bone: cortical apparent density2.23.54.52.11.71.8
Bone: cortical area0.20.20.40.60.60.3
Bone: cortical porosity0.60.60.70.80.70.9
Bone: cortical porosity0.60.71.50.50.51.2
Bone: cortical thickness0.81.42.31.31.50.3
Bone: cortical thickness0.50.61.01.00.80.3
Bone: cortical tissue density2.23.44.32.11.61.8
Condit. Reinf. active minus inactive responses0.40.51.2-0.4-0.3-1.1
Condit. Reinf. active-inactive response ratio1.31.31.6-1.2-1.1-1.2
Condit. Reinf. active responses0.20.20.30.40.6-0.4
Condit. Reinf. inactive responses2.02.63.71.91.90.8
Incentive salience index mean0.10.10.10.20.4-0.4
Condit. Reinf. lever presses0.40.50.60.60.80.8
Condit. Reinf. active minus inactive responses0.20.20.30.50.30.6
Condit. Reinf. active-inactive response ratio0.00.00.00.2-0.1-0.1
Condit. Reinf. active responses0.10.10.2-0.3-0.30.4
Condit. Reinf. inactive responses0.20.30.6-0.8-0.5-0.2
Condit. Reinf. lever presses2.13.13.9-2.0-1.9-1.3
Condit. Reinf. lever reinforcers received0.00.00.1-0.2-0.30.1
Conditioned reinforcement - actives0.00.20.30.30.10.6
Conditioned reinforcement - inactives0.10.40.60.80.70.1
Conditioned locomotion0.10.10.20.20.20.5
Patch foraging indifference point 0 sec4.211.712.33.53.53.3
Patch foraging indifference point AUC2.86.68.42.82.91.8
Delay disc. indifference point, 0s delay0.10.20.30.60.40.0
Delay disc. indifference point, 16s delay1.92.73.1-1.5-1.7-1.8
Delay disc. indifference point, 2s delay4.04.55.6-2.1-2.4-1.9
Delay disc. indifference point, 24s delay1.01.51.6-1.2-1.3-1.3
Delay disc. indifference point, 4s delay0.70.81.1-0.7-1.0-0.9
Delay disc. indifference point, 8s delay0.91.53.0-0.8-0.9-1.7
Indifference point function ln k0.20.51.30.40.21.2
Indifference point function log k0.20.51.30.40.21.2
Patch foraging total patch changes 0 sec4.713.714.43.83.83.5
Patch foraging total patch changes 12 sec3.24.35.52.32.31.4
Patch foraging total patch changes 18 sec1.33.03.91.92.01.2
Patch foraging total patch changes 24 sec0.82.94.11.51.52.0
Patch foraging total patch changes 6 sec6.510.913.13.33.62.9
Patch foraging time to switch 0 sec3.915.118.1-4.3-3.8-3.6
Patch foraging water rate 0 sec6.424.229.65.44.84.4
Patch foraging water rate 12 sec1.35.37.32.71.92.2
Patch foraging water rate 18 sec2.04.56.82.11.52.6
Patch foraging water rate 24 sec2.23.14.71.81.22.2
Patch foraging water rate 6 sec3.55.26.32.52.02.3
Seeking ratio, delayed vs. immediate footshock0.20.30.70.30.30.8
Distance traveled before self-admin0.30.70.8-0.9-0.8-0.8
Distance traveled after self-admin0.00.00.10.10.0-0.4
Extensor digitorum longus weight8.333.140.46.45.85.0
Bone: elastic displacement0.10.20.4-0.2-0.3-0.6
Bone: elastic work0.70.91.1-1.0-1.1-0.9
Bone: endosteal estimation1.33.14.6-1.9-2.1-1.0
Bone: endosteal perimeter0.10.30.4-0.6-0.7-0.1
Epididymis fat weight1.36.47.6-2.8-2.4-2.4
Delta time in closed arm before/after self-admin0.40.41.20.1-0.11.1
Delta time in open arm before/after self-admin0.70.81.31.11.10.2
Diff in mean of infusions in LGA sessions0.91.72.01.21.31.4
Delay discount exponential model param1.82.53.91.21.42.0
Extinction: sum of active levers before priming0.30.51.20.30.5-1.1
Active lever presses in extinction session 61.11.11.61.21.20.7
Bone: final force0.20.30.5-0.6-0.70.1
Bone: final moment0.10.20.3-0.4-0.50.3
Food consumed during 24 hour testing period0.40.81.11.00.90.8
Glucose0.10.10.40.10.0-0.6
Heart weight0.20.30.50.70.40.6
Delay discount hyperbolic model param2.02.63.81.31.52.0
Intermittent access intake day 1-15 change0.42.12.6-1.6-1.4-1.3
Intermittent access intake escalation0.52.52.8-1.7-1.4-1.6
Intermittent access intake escalation 20.71.12.0-0.9-0.7-1.4
Intermitt. access day 1 inactive lever presses0.10.81.11.11.0-0.3
Intermitt. access day 15 inactive lever presses0.42.03.21.81.70.2
Intermitt. access escalation Index0.31.02.20.60.51.5
Intermittent access day 1 total infusions0.00.00.1-0.2-0.20.2
Intermittent access day 15 total infusions0.51.21.5-1.2-1.1-0.9
Intermittent access terminal intake (last 3 days)0.91.62.1-1.2-1.1-1.5
Intermittent access total infusions0.30.30.4-0.6-0.6-0.4
Intermittent access day 1 locomotion0.10.20.3-0.6-0.4-0.1
Intermittent access day 15 total locomotion0.20.71.1-1.0-1.0-0.1
Intermittent access total locomotion0.10.10.1-0.4-0.20.1
Intermittent access standard deviation0.00.10.2-0.20.0-0.4
Left kidney weight1.411.014.03.23.03.7
Right kidney weight1.18.011.42.72.43.4
Cocaine induced anxiety0.30.91.11.11.00.8
Post-drug Anxiety1.31.52.11.41.20.9
Baseline Anxiety0.10.20.2-0.4-0.4-0.4
Tail length2.915.520.94.64.12.9
Length with tail7.633.743.56.66.14.5
Length without tail3.216.819.64.44.33.5
Times rat made contact with spout0.30.30.50.60.7-0.2
Lifetime Intake0.40.50.6-0.8-0.8-0.5
Liver weight, left2.74.75.52.32.31.9
Liver weight, right0.10.10.20.10.40.4
Locomotor activity0.20.30.60.30.30.8
Locomotor testing distance0.00.10.10.20.20.3
Locomotor testing rearing0.72.43.2-1.8-1.6-1.2
Locomotion in novel chamber0.60.81.71.30.8-0.1
Locomotion in novel chamber post-restriction0.00.10.3-0.3-0.50.1
Fecal boli incidents, locomotor time 10.10.30.7-0.5-0.2-0.8
Change in fecal boli incidents, locomotor task1.21.32.70.90.61.6
Time >=10cm from walls, locomotor time 12.73.44.21.72.11.8
Bouts of movement, locomotor time 11.82.35.1-1.1-0.8-2.3
Total resting periods, locomotor time 12.42.75.6-1.3-1.0-2.4
Rest time, locomotor task time 10.61.01.3-1.0-0.9-1.1
Distance moved, locomotor task time 10.20.40.8-0.7-0.9-0.3
Vertical activity count, locomotor time 10.00.00.10.1-0.20.3
Time >=10cm from walls, locomotor time 20.92.43.61.81.90.8
Bouts of movement, locomotor time 20.10.20.5-0.3-0.7-0.2
Total resting periods, locomotor time 20.10.30.7-0.5-0.9-0.2
Rest time, locomotor task time 20.20.30.4-0.4-0.5-0.6
Distance moved, locomotor task time 20.10.10.2-0.4-0.4-0.3
Vertical activity count, locomotor time 20.10.30.50.70.60.3
Light reinforcement 10.10.41.00.20.11.0
Light reinforcement 20.40.91.4-1.2-1.1-0.4
Bone: marrow area1.22.94.4-1.9-2.1-1.0
Bone: maximum diameter0.00.10.1-0.4-0.3-0.2
Bone: maximum force0.00.10.1-0.3-0.30.3
Bone: maximum moment0.00.10.2-0.1-0.10.4
Mean time between licks in bursts0.10.71.1-1.1-0.9-0.5
Mean num. licks in bursts0.71.82.61.51.60.8
Cd content in liver0.10.10.3-0.2-0.50.0
Co content in liver0.60.71.01.00.8-0.8
Cu content in liver1.21.41.8-1.3-1.2-1.0
Fe content in liver0.50.60.7-0.8-0.8-0.7
K content in liver0.70.60.70.90.90.7
Mg content in liver0.10.20.40.20.20.6
Mn content in liver0.10.20.4-0.2-0.10.6
Na content in liver0.10.10.2-0.5-0.2-0.1
Rb content in liver0.20.30.40.60.50.3
Se content in liver0.10.10.1-0.3-0.3-0.2
Sr content in liver0.30.20.5-0.2-0.4-0.7
Zn content in liver0.00.00.10.30.1-0.3
Bone: minimum diameter0.30.60.90.80.70.9
Time in familiar zone, hab. session 10.20.20.50.20.3-0.7
Time in novel zone, hab. session 10.70.81.1-1.1-1.10.0
Total zone transitions, hab. session 10.50.71.0-1.0-1.0-0.2
Total locomotion distance, hab. session 10.10.10.2-0.1-0.20.5
Locomotion velocity, hab. session 10.20.30.50.50.50.7
Time in familiar zone, hab. session 20.60.71.10.91.10.3
Time in novel zone, hab. session 20.91.01.3-1.1-1.2-0.7
Total zone transitions, hab. session 20.40.61.6-0.2-0.1-1.3
Total locomotion distance, hab. session 20.20.30.30.60.6-0.5
Locomotion velocity, hab. session 20.30.40.50.70.7-0.3
Novel to familiar place preference ratio0.50.71.1-0.8-0.6-1.0
Novelty place preference0.71.01.4-0.9-0.8-1.2
Time in novel zone, NPP test0.30.40.7-0.5-0.4-0.8
Total zone transitions, NPP test0.50.71.11.01.1-0.0
Total locomotion distance, NPP test0.30.40.60.70.8-0.0
Locomotion velocity, NPP test0.10.20.20.50.4-0.2
Intraocular pressure0.40.70.8-0.8-0.8-0.9
Delta distance traveled before/after self-admin0.00.00.00.10.1-0.1
Delta ambulatory time before/after self-admin0.10.10.30.50.40.0
Parametrial fat weight0.20.51.50.10.01.2
Pavlov. Cond. lever latency0.00.00.00.10.1-0.0
Pavlov. Cond. magazine entry latency0.00.00.00.00.1-0.2
Pavlov. Cond. change in total contacts0.00.00.00.20.20.2
Pavlov. Cond. index score0.00.00.0-0.10.1-0.2
Pavlov. Cond. latency score0.00.00.0-0.10.1-0.2
Pavlov. Cond. lever contacts0.10.20.2-0.5-0.4-0.3
Pavlov. Cond. magazine entry number0.00.00.0-0.0-0.20.1
Pavlov. Cond. intertrial magazine entries7.28.711.13.33.22.2
Pavlov. Cond. lever-magazine prob. diff.0.00.10.2-0.10.1-0.4
Pavlov. Cond. response bias0.00.00.10.10.3-0.0
Pavlov. Cond. lever latency3.34.75.22.32.12.1
Pavlov. Cond. magazine entry latency2.43.43.7-1.9-1.7-1.9
Pavlov. Cond. change in total contacts3.17.68.3-2.9-2.7-2.7
Pavlov. Cond. index score3.65.76.3-2.5-2.3-2.3
Pavlov. Cond. latency score3.14.95.4-2.3-2.1-2.3
Pavlov. Cond. lever contacts3.75.46.1-2.5-2.3-2.2
Pavlov. Cond. magazine entry number3.03.95.71.91.62.4
Pavlov. Cond. intertrial magazine entries2.04.44.92.21.92.2
Pavlov. Cond. lever-magazine prob. diff.4.16.37.1-2.7-2.4-2.4
Pavlov. Cond. response bias3.95.35.9-2.4-2.3-2.2
Time in closed arm before self-admin4.68.09.7-3.1-2.7-2.6
Time in closed arm after self-admin4.85.47.4-2.7-2.7-1.3
Time in open arm before self-admin4.55.56.12.42.12.5
Time in open arm after self-admin9.09.912.03.53.42.5
Bone: periosteal estimation0.20.60.9-0.8-0.9-0.5
Bone: periosteal perimeter0.00.10.2-0.1-0.10.5
Bone: post-yield work1.83.13.31.81.71.8
Progressive ratio test 1 active lever presses0.20.40.6-0.7-0.8-0.1
Progressive ratio test 1 breakpoint0.20.40.6-0.7-0.8-0.2
Progressive ratio test 1 inactive lever presses0.51.31.71.31.01.1
Progressive ratio test 2 active lever presses0.50.71.1-0.9-1.00.3
Progressive ratio test 2 breakpoint0.50.61.0-0.8-1.00.3
Progressive ratio test 2 inactive lever presses0.10.20.4-0.3-0.60.1
Incentive Sensitization - Responses0.20.50.7-0.7-0.80.6
Incentive Sensitization - Breakpoint0.20.50.7-0.7-0.80.5
Sum of active levers in priming session hrs 5-61.21.11.41.11.20.8
Progressive ratio0.82.43.5-1.7-1.9-0.9
Food seeking constrained by brief footshock0.10.20.50.0-0.1-0.7
Seeking ratio, punishment vs. effort0.61.32.11.31.4-0.1
Retroperitoneal fat weight0.10.40.7-0.5-0.6-0.8
Reaction time number correct1.65.66.42.52.32.2
Reaction time mean minus median0.00.20.4-0.2-0.1-0.6
Reaction time mean minus median AUC0.00.20.6-0.1-0.0-0.7
Reaction time num false alarms1.11.92.51.61.31.2
Reaction time num false alarms AUC1.02.22.71.61.21.6
Reaction time trials correct on left1.65.66.42.52.32.2
Reaction time trials on left1.75.76.42.52.32.3
Reaction time mean1.32.93.4-1.8-1.8-1.5
Reaction time mean AUC0.71.72.0-1.4-1.4-1.1
Median of all reaction times1.72.73.6-1.7-1.9-1.2
Reaction time omissions0.10.20.30.40.00.6
Reaction time false alarm rate0.10.10.20.30.00.5
Reaction time premature initiation rate0.10.20.30.50.50.1
Reaction time premature initiations1.02.93.61.91.81.4
Std. dev. reaction times0.62.02.2-1.4-1.4-1.5
Reaction time trials completed1.75.76.42.52.32.3
Reaction time trials AUC1.76.06.82.62.32.4
Run reversals in cocaine runway, females1.61.72.2-1.3-1.1-1.5
Run reversals in cocaine runway, males0.30.30.8-0.3-0.40.9
Latency to leave start box in cocaine runway0.91.31.5-1.2-1.2-0.9
Latency to leave start box in cocaine runway, F0.40.40.7-0.8-0.8-0.1
Latency to leave start box in cocaine runway, M1.00.91.6-0.8-0.8-1.3
Std. dev. time between licks in bursts0.10.10.20.30.50.2
Total sessions with >9 infusions1.21.52.0-1.4-1.4-0.8
Short access day 1 total inactive lever presses0.00.10.1-0.2-0.3-0.3
Short access day 10 total inactive lever presses0.00.10.10.30.40.0
Short access day 1 total infusions0.20.30.5-0.5-0.7-0.4
Short access day 10 total infusions0.50.81.0-1.0-0.9-0.8
Short access total infusions1.11.52.2-1.4-1.5-0.6
Short access day 1 locomotion0.81.41.7-1.3-1.3-0.9
Short access day 10 total locomotion0.10.40.6-0.7-0.4-0.8
Short access total locomotion0.30.40.7-0.8-0.8-0.2
One hour access (0.3 mA shock)0.20.30.40.60.60.2
Compulsive drug intake1.31.92.21.51.51.2
One hour access (shock baseline)0.10.20.5-0.3-0.3-0.7
Social response proportion0.70.91.5-1.0-1.20.3
Social responses0.40.50.8-0.9-0.9-0.2
Social time0.10.20.6-0.3-0.80.0
Soleus weight2.26.58.42.82.91.8
Bone: stiffness0.61.11.21.11.01.0
Tibialis anterior weight0.72.53.81.91.90.4
Time to tail flick, vehicle, before self-admin0.60.71.01.01.0-0.5
Time to tail flick, vehicle, after self-admin0.00.10.20.20.40.3
Time to tail flick, test, before self-admin0.70.91.0-0.9-1.0-0.8
Time to tail flick, test, after self-admin2.52.73.11.61.61.8
Delta time to tail flick, vehicle, before/after SA0.60.61.30.50.61.1
Delta time to tail flick, test, before/after SA2.22.72.91.71.61.7
Tibia length0.30.82.00.40.31.4
Ambulatory time before self-admin0.10.50.6-0.8-0.7-0.5
Ambulatory time after self-admin0.00.10.1-0.3-0.2-0.2
Bone: tissue strength0.20.20.3-0.5-0.5-0.1
Total heroin consumption4.55.36.92.62.51.7
Bone: trabecular number0.30.50.90.70.90.2
Bone: trabecular spacing0.10.10.2-0.4-0.50.1
Bone: trabecular thickness0.00.00.1-0.00.00.3
Bone: trabecular tissue density0.00.00.0-0.2-0.2-0.0
Water consumed over 24 hours0.71.31.81.10.91.4
Number of responses in last shaping day0.10.20.4-0.3-0.3-0.6