LOC120103632

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye intron excision ratio chr6_131654175_131655805 0.19 0.14 9.5e-03 0.11 0.08 0.01 0.05 1.0e-02 2.1e-02 2.1e-01 6.1e-02
2 Eye intron excision ratio chr6_131654146_131654429 0.32 0.2 2.5e-03 0.13 0.12 0.1 0.08 4.6e-03 6.3e-03 1.2e-02 2.2e-02
3 Adipose gene expression LOC120103632 0.05 0.04 1.0e-06 0.05 0.04 0.04 0.04 3.1e-06 9.6e-06 1.1e-05 1.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.2-0.2-0.40.1
Area under the delay curve0.10.10.20.4-0.3-0.4
BMI with tail1.96.37.22.7-2.5-2.3
BMI without tail0.20.51.41.2-0.3-0.1
Body weight0.72.94.1-2.01.41.7
Weight adjusted by age0.20.20.5-0.70.1-0.2
Bone surface0.10.10.20.4-0.40.0
Bone volume0.00.10.10.3-0.20.3
Breakpoint value in progressive ratio session0.20.20.30.5-0.2-0.6
Number of licking bursts0.10.20.40.6-0.1-0.3
Context. condit. distance diff. score2.93.54.1-2.01.81.8
Locomotion velocity, session 10.10.10.2-0.50.30.3
Locomotion distance, session 10.50.71.00.6-0.9-1.0
Locomotion velocity, session 20.00.10.10.30.3-0.0
Locomotion distance, session 20.30.40.50.7-0.6-0.4
Locomotion velocity, session 30.10.10.20.2-0.4-0.2
Locomotion distance, session 30.00.00.00.0-0.00.1
Stereotopy head waving bouts, day 30.10.10.2-0.20.40.3
Stereotopy head waving duration, day 30.30.30.5-0.30.70.6
Locomotion velocity, session 70.30.30.50.1-0.7-0.6
Locomotion distance, session 70.70.91.01.0-1.0-0.9
Stereotopy head waving bouts, day 71.71.92.8-1.71.01.3
Stereotopy head waving duration, day 70.60.81.5-1.20.60.7
Locomotion velocity, session 80.91.11.8-1.30.71.0
Locomotion distance, session 80.20.30.5-0.70.20.5
Degree of sensitization distance0.30.30.30.5-0.5-0.5
Degree of sensitization stereotypy0.40.40.9-1.00.20.6
Conditioned locomotion1.31.51.8-1.31.21.1
Cocaine response after cond. corrected0.60.61.00.6-0.7-1.0
Cocaine response after cond. not corrected1.81.92.21.3-1.4-1.5
Cocaine response before conditioning2.02.43.11.8-1.7-1.1
Saline control response0.10.10.2-0.1-0.40.1
Bone: connectivity density0.20.30.4-0.70.10.7
Bone: cortical apparent density6.68.610.5-2.83.22.8
Bone: cortical area0.40.71.4-0.61.20.5
Bone: cortical porosity0.20.20.5-0.50.10.7
Bone: cortical porosity0.10.10.2-0.2-0.40.2
Bone: cortical thickness0.40.60.9-0.81.00.4
Bone: cortical thickness1.01.11.5-1.00.91.2
Bone: cortical tissue density6.78.810.8-2.83.32.8
Condit. Reinf. active minus inactive responses0.50.60.90.7-0.6-0.9
Condit. Reinf. active-inactive response ratio2.83.03.91.6-1.6-2.0
Condit. Reinf. active responses0.00.10.10.1-0.1-0.4
Condit. Reinf. inactive responses2.02.42.7-1.51.61.5
Incentive salience index mean0.40.50.80.4-0.7-0.9
Condit. Reinf. lever presses0.10.10.2-0.0-0.4-0.4
Condit. Reinf. active minus inactive responses0.81.01.2-0.91.01.1
Condit. Reinf. active-inactive response ratio0.80.81.2-0.61.10.9
Condit. Reinf. active responses0.10.20.3-0.30.40.5
Condit. Reinf. inactive responses0.20.30.50.5-0.7-0.4
Condit. Reinf. lever presses0.91.22.01.4-1.0-0.8
Condit. Reinf. lever reinforcers received0.20.30.4-0.40.40.7
Conditioned reinforcement - actives2.32.33.0-1.21.71.5
Conditioned reinforcement - inactives0.70.70.9-0.90.80.9
Conditioned locomotion0.10.20.30.3-0.6-0.3
Patch foraging indifference point 0 sec3.86.07.3-2.72.52.2
Patch foraging indifference point AUC2.12.43.4-1.81.71.0
Delay disc. indifference point, 0s delay0.30.30.6-0.80.40.6
Delay disc. indifference point, 16s delay0.30.30.50.70.2-0.7
Delay disc. indifference point, 2s delay0.60.70.91.0-0.6-0.9
Delay disc. indifference point, 24s delay0.60.50.80.6-0.7-0.9
Delay disc. indifference point, 4s delay0.20.20.5-0.30.30.7
Delay disc. indifference point, 8s delay0.10.10.10.3-0.3-0.1
Indifference point function ln k1.31.83.3-1.20.81.8
Indifference point function log k1.31.83.3-1.20.81.8
Patch foraging total patch changes 0 sec4.57.28.7-3.02.62.4
Patch foraging total patch changes 12 sec2.83.64.6-2.12.11.4
Patch foraging total patch changes 18 sec1.11.41.8-1.41.30.8
Patch foraging total patch changes 24 sec0.30.40.7-0.80.60.4
Patch foraging total patch changes 6 sec2.13.24.7-2.02.21.0
Patch foraging time to switch 0 sec10.516.319.04.1-4.4-3.6
Patch foraging water rate 0 sec17.828.533.1-5.25.85.0
Patch foraging water rate 12 sec10.716.418.8-3.74.34.1
Patch foraging water rate 18 sec5.27.07.3-2.72.52.7
Patch foraging water rate 24 sec4.25.86.4-2.22.52.5
Patch foraging water rate 6 sec5.27.69.0-2.73.02.6
Seeking ratio, delayed vs. immediate footshock0.20.30.6-0.80.40.3
Distance traveled before self-admin0.70.71.50.8-0.1-1.2
Distance traveled after self-admin0.60.70.9-0.71.00.7
Extensor digitorum longus weight7.429.236.1-6.05.15.1
Bone: elastic displacement0.40.40.7-0.50.60.8
Bone: elastic work0.00.10.10.30.20.1
Bone: endosteal estimation0.20.41.01.0-0.4-0.1
Bone: endosteal perimeter0.10.10.30.50.3-0.1
Epididymis fat weight3.37.89.42.8-3.1-2.5
Delta time in closed arm before/after self-admin0.10.10.1-0.30.00.3
Delta time in open arm before/after self-admin0.40.40.7-0.90.50.5
Diff in mean of infusions in LGA sessions0.00.00.10.10.0-0.3
Delay discount exponential model param0.10.10.1-0.30.20.3
Extinction: sum of active levers before priming0.10.10.20.2-0.1-0.4
Active lever presses in extinction session 61.61.61.7-1.21.31.3
Bone: final force0.10.20.50.00.70.4
Bone: final moment0.20.30.5-0.10.70.5
Food consumed during 24 hour testing period0.60.71.2-1.10.60.8
Glucose0.40.61.0-0.51.00.7
Heart weight0.00.00.00.20.1-0.1
Delay discount hyperbolic model param0.10.10.2-0.40.40.4
Intermittent access intake day 1-15 change1.11.11.61.2-1.0-0.8
Intermittent access intake escalation1.01.01.61.2-1.1-0.5
Intermittent access intake escalation 20.20.20.30.5-0.3-0.4
Intermitt. access day 1 inactive lever presses2.42.63.3-1.81.71.3
Intermitt. access day 15 inactive lever presses1.21.31.7-1.01.21.3
Intermitt. access escalation Index0.20.20.2-0.40.50.4
Intermittent access day 1 total infusions0.10.10.10.2-0.3-0.3
Intermittent access day 15 total infusions0.91.01.51.2-1.1-0.6
Intermittent access terminal intake (last 3 days)1.21.31.71.3-1.2-1.0
Intermittent access total infusions0.20.20.30.6-0.5-0.3
Intermittent access day 1 locomotion0.30.30.40.5-0.6-0.6
Intermittent access day 15 total locomotion0.00.00.10.3-0.10.2
Intermittent access total locomotion0.00.10.10.2-0.3-0.1
Intermittent access standard deviation2.32.42.71.5-1.6-1.5
Left kidney weight1.74.86.1-2.51.72.3
Right kidney weight1.13.13.8-1.91.31.9
Cocaine induced anxiety1.41.73.2-1.01.80.9
Post-drug Anxiety1.21.32.8-0.81.70.7
Baseline Anxiety1.21.21.61.1-1.3-0.9
Tail length5.316.117.1-4.13.84.1
Length with tail6.824.731.4-5.64.54.7
Length without tail2.55.49.4-3.12.01.7
Times rat made contact with spout0.20.20.4-0.50.6-0.0
Lifetime Intake0.00.00.10.4-0.10.0
Liver weight, left2.54.05.2-1.82.31.8
Liver weight, right0.10.20.4-0.60.2-0.3
Locomotor activity0.10.10.3-0.50.3-0.1
Locomotor testing distance0.20.30.4-0.60.60.1
Locomotor testing rearing2.33.65.21.8-1.5-2.3
Locomotion in novel chamber6.68.110.4-2.52.83.2
Locomotion in novel chamber post-restriction0.00.00.10.20.00.2
Fecal boli incidents, locomotor time 12.22.44.11.1-2.0-1.3
Change in fecal boli incidents, locomotor task2.72.53.4-1.51.81.4
Time >=10cm from walls, locomotor time 10.20.20.4-0.3-0.3-0.6
Bouts of movement, locomotor time 12.02.24.31.2-2.1-0.9
Total resting periods, locomotor time 11.82.03.91.2-2.0-0.7
Rest time, locomotor task time 10.00.00.10.1-0.00.3
Distance moved, locomotor task time 10.60.61.20.8-0.1-1.1
Vertical activity count, locomotor time 10.20.20.50.10.7-0.2
Time >=10cm from walls, locomotor time 20.40.51.0-1.00.30.5
Bouts of movement, locomotor time 21.21.31.4-1.11.21.2
Total resting periods, locomotor time 21.01.11.2-0.91.11.1
Rest time, locomotor task time 20.20.20.6-0.20.80.3
Distance moved, locomotor task time 20.70.81.00.8-0.8-1.0
Vertical activity count, locomotor time 20.00.00.1-0.10.0-0.3
Light reinforcement 10.00.00.00.00.00.1
Light reinforcement 22.02.63.21.6-1.4-1.8
Bone: marrow area0.20.41.01.0-0.3-0.1
Bone: maximum diameter0.10.20.20.50.2-0.4
Bone: maximum force0.10.20.5-0.10.70.3
Bone: maximum moment0.10.20.4-0.20.60.4
Mean time between licks in bursts0.40.60.90.9-0.7-0.7
Mean num. licks in bursts0.30.30.8-0.90.40.2
Cd content in liver1.51.72.5-1.31.01.6
Co content in liver1.41.62.0-1.41.21.2
Cu content in liver1.92.43.11.7-1.1-1.7
Fe content in liver0.70.81.21.1-0.7-0.9
K content in liver0.20.20.4-0.60.40.3
Mg content in liver0.30.30.5-0.30.70.4
Mn content in liver0.50.61.1-0.60.61.0
Na content in liver0.30.30.50.5-0.5-0.7
Rb content in liver0.91.11.2-1.01.11.0
Se content in liver0.00.00.10.2-0.3-0.1
Sr content in liver0.30.20.4-0.30.60.5
Zn content in liver0.20.20.4-0.30.60.4
Bone: minimum diameter0.91.72.1-1.11.51.3
Time in familiar zone, hab. session 10.20.10.40.0-0.6-0.2
Time in novel zone, hab. session 10.30.30.50.7-0.4-0.4
Total zone transitions, hab. session 10.20.30.60.6-0.8-0.3
Total locomotion distance, hab. session 10.40.51.1-0.50.51.0
Locomotion velocity, hab. session 10.91.31.7-0.91.11.3
Time in familiar zone, hab. session 20.30.30.4-0.2-0.7-0.6
Time in novel zone, hab. session 20.20.20.50.7-0.0-0.0
Total zone transitions, hab. session 20.50.61.10.6-1.0-0.6
Total locomotion distance, hab. session 20.50.61.1-0.60.71.0
Locomotion velocity, hab. session 20.70.91.4-0.80.91.2
Novel to familiar place preference ratio0.60.60.80.7-0.9-0.7
Novelty place preference0.40.40.50.7-0.7-0.5
Time in novel zone, NPP test0.20.20.40.4-0.6-0.3
Total zone transitions, NPP test0.30.40.7-0.8-0.30.6
Total locomotion distance, NPP test0.30.50.7-0.80.20.8
Locomotion velocity, NPP test0.30.40.7-0.70.40.9
Intraocular pressure0.10.10.2-0.0-0.5-0.4
Delta distance traveled before/after self-admin0.70.81.6-0.80.31.3
Delta ambulatory time before/after self-admin2.02.23.7-1.50.91.9
Parametrial fat weight0.00.10.10.3-0.0-0.2
Pavlov. Cond. lever latency0.60.80.9-0.60.91.0
Pavlov. Cond. magazine entry latency0.60.81.40.5-1.2-0.8
Pavlov. Cond. change in total contacts0.20.20.30.3-0.6-0.4
Pavlov. Cond. index score0.91.11.90.7-1.4-1.0
Pavlov. Cond. latency score0.70.81.30.6-1.1-0.9
Pavlov. Cond. lever contacts1.11.31.51.0-1.2-1.2
Pavlov. Cond. magazine entry number0.70.91.5-0.51.20.9
Pavlov. Cond. intertrial magazine entries6.98.310.4-3.22.92.5
Pavlov. Cond. lever-magazine prob. diff.0.70.91.50.6-1.2-0.9
Pavlov. Cond. response bias0.81.01.60.6-1.3-1.0
Pavlov. Cond. lever latency1.52.13.5-1.91.31.0
Pavlov. Cond. magazine entry latency3.54.14.72.2-2.1-1.8
Pavlov. Cond. change in total contacts4.15.67.62.7-2.1-2.2
Pavlov. Cond. index score3.54.55.92.4-2.1-1.8
Pavlov. Cond. latency score3.74.65.82.4-2.1-1.9
Pavlov. Cond. lever contacts2.12.94.32.1-1.6-1.4
Pavlov. Cond. magazine entry number2.63.13.8-2.01.81.6
Pavlov. Cond. intertrial magazine entries5.57.17.4-2.72.72.6
Pavlov. Cond. lever-magazine prob. diff.4.15.26.92.6-2.2-2.0
Pavlov. Cond. response bias2.33.14.42.1-1.8-1.4
Time in closed arm before self-admin5.46.17.62.8-2.1-2.6
Time in closed arm after self-admin1.91.92.81.7-1.3-1.1
Time in open arm before self-admin7.58.18.8-2.73.02.9
Time in open arm after self-admin4.85.37.4-2.72.21.9
Bone: periosteal estimation0.10.20.30.30.60.4
Bone: periosteal perimeter0.10.10.30.20.5-0.0
Bone: post-yield work1.41.92.5-1.61.21.3
Progressive ratio test 1 active lever presses0.00.00.0-0.00.10.1
Progressive ratio test 1 breakpoint0.00.00.00.1-0.0-0.1
Progressive ratio test 1 inactive lever presses2.83.03.9-2.01.71.5
Progressive ratio test 2 active lever presses0.10.10.20.10.20.4
Progressive ratio test 2 breakpoint0.10.10.3-0.00.30.6
Progressive ratio test 2 inactive lever presses1.21.42.3-0.61.21.5
Incentive Sensitization - Responses0.10.10.20.20.00.5
Incentive Sensitization - Breakpoint0.10.10.40.00.20.6
Sum of active levers in priming session hrs 5-60.40.40.60.8-0.3-0.7
Progressive ratio0.70.81.60.11.20.9
Food seeking constrained by brief footshock0.50.60.7-0.80.90.7
Seeking ratio, punishment vs. effort0.20.20.3-0.5-0.4-0.3
Retroperitoneal fat weight0.10.50.80.5-0.9-0.6
Reaction time number correct3.34.86.0-2.42.02.1
Reaction time mean minus median0.20.20.60.1-0.8-0.2
Reaction time mean minus median AUC0.10.20.5-0.2-0.70.1
Reaction time num false alarms1.31.82.5-1.61.31.1
Reaction time num false alarms AUC1.72.43.0-1.71.51.3
Reaction time trials correct on left3.34.86.0-2.42.02.1
Reaction time trials on left3.44.96.1-2.52.02.1
Reaction time mean0.81.11.81.1-1.3-0.5
Reaction time mean AUC0.40.61.20.7-1.1-0.3
Median of all reaction times0.40.50.70.9-0.9-0.2
Reaction time omissions1.62.33.4-1.70.71.8
Reaction time false alarm rate0.10.20.3-0.50.50.2
Reaction time premature initiation rate0.70.91.6-0.61.30.8
Reaction time premature initiations2.43.44.3-1.72.11.7
Std. dev. reaction times0.40.51.10.7-1.1-0.3
Reaction time trials completed3.44.96.1-2.52.02.1
Reaction time trials AUC3.65.16.2-2.52.12.2
Run reversals in cocaine runway, females1.61.52.61.3-1.6-0.4
Run reversals in cocaine runway, males0.20.20.5-0.10.70.2
Latency to leave start box in cocaine runway0.20.20.50.4-0.2-0.7
Latency to leave start box in cocaine runway, F0.40.40.70.6-0.5-0.9
Latency to leave start box in cocaine runway, M0.20.20.30.3-0.0-0.6
Std. dev. time between licks in bursts0.10.10.2-0.2-0.50.2
Total sessions with >9 infusions0.10.10.10.10.30.3
Short access day 1 total inactive lever presses0.00.10.1-0.20.20.3
Short access day 10 total inactive lever presses0.70.81.0-0.90.61.0
Short access day 1 total infusions0.50.61.0-0.41.00.8
Short access day 10 total infusions0.10.10.30.5-0.1-0.2
Short access total infusions0.10.10.30.60.1-0.0
Short access day 1 locomotion0.20.30.40.5-0.3-0.6
Short access day 10 total locomotion0.40.40.60.5-0.6-0.8
Short access total locomotion0.00.00.00.10.1-0.1
One hour access (0.3 mA shock)0.20.30.5-0.50.70.4
Compulsive drug intake0.20.20.5-0.4-0.4-0.7
One hour access (shock baseline)0.00.10.10.20.20.3
Social response proportion0.30.30.80.10.90.3
Social responses0.10.10.10.4-0.0-0.3
Social time1.52.03.1-1.11.31.8
Soleus weight0.41.02.9-1.70.10.5
Bone: stiffness1.21.92.8-1.21.71.2
Tibialis anterior weight0.41.42.3-1.51.20.8
Time to tail flick, vehicle, before self-admin0.91.01.6-1.30.70.9
Time to tail flick, vehicle, after self-admin0.10.20.3-0.5-0.40.1
Time to tail flick, test, before self-admin0.10.10.1-0.20.4-0.0
Time to tail flick, test, after self-admin2.02.12.4-1.61.21.5
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.1-0.30.0
Delta time to tail flick, test, before/after SA1.71.62.2-1.50.91.3
Tibia length0.10.30.4-0.30.70.5
Ambulatory time before self-admin0.91.01.61.1-0.4-1.3
Ambulatory time after self-admin0.00.00.00.10.1-0.1
Bone: tissue strength0.00.00.10.4-0.1-0.1
Total heroin consumption0.80.91.2-1.11.10.7
Bone: trabecular number0.20.30.5-0.70.20.7
Bone: trabecular spacing0.00.00.10.3-0.1-0.1
Bone: trabecular thickness0.00.00.1-0.20.20.2
Bone: trabecular tissue density0.00.00.1-0.00.3-0.1
Water consumed over 24 hours2.83.44.7-1.62.21.8
Number of responses in last shaping day0.60.71.10.8-0.5-1.1