LOC120103628

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression LOC120103628 0.13 0.1 3.3e-07 0.13 0.12 0.13 0.13 1.5e-07 3.4e-07 1.9e-07 2.4e-07
2 PL gene expression LOC120103628 0.28 0.18 6.7e-06 0.04 0.04 0.04 0.04 4.7e-05 2.9e-05 9.5e-05 8.3e-05
3 Brain gene expression LOC120103628 0.04 0.04 1.3e-03 0.02 0.03 0.01 0.02 4.9e-03 1.6e-03 2.5e-02 3.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.10.2-0.3-0.2
Area under the delay curve0.00.00.10.00.1-0.3
BMI with tail2.37.38.22.8-2.5-2.9
BMI without tail0.81.72.31.2-1.5-1.2
Body weight0.10.50.7-0.70.80.6
Weight adjusted by age0.00.00.0-0.20.10.1
Bone surface0.10.20.40.3-0.6-0.2
Bone volume0.10.10.30.3-0.5-0.2
Breakpoint value in progressive ratio session0.00.10.10.3-0.3-0.1
Number of licking bursts0.00.00.1-0.2-0.00.3
Context. condit. distance diff. score1.72.02.2-1.41.41.5
Locomotion velocity, session 10.10.10.3-0.40.00.5
Locomotion distance, session 10.50.70.90.8-1.0-0.7
Locomotion velocity, session 20.10.10.4-0.10.6-0.0
Locomotion distance, session 20.40.50.70.7-0.8-0.6
Locomotion velocity, session 30.10.10.20.4-0.1-0.4
Locomotion distance, session 30.00.00.0-0.0-0.10.1
Stereotopy head waving bouts, day 30.20.20.2-0.40.40.4
Stereotopy head waving duration, day 30.30.30.4-0.60.60.5
Locomotion velocity, session 70.10.20.30.50.0-0.5
Locomotion distance, session 70.70.91.11.0-0.8-1.0
Stereotopy head waving bouts, day 71.21.31.5-1.21.21.1
Stereotopy head waving duration, day 70.50.60.8-0.80.90.6
Locomotion velocity, session 80.30.30.4-0.50.60.5
Locomotion distance, session 80.10.10.10.3-0.4-0.1
Degree of sensitization distance0.10.10.10.3-0.1-0.3
Degree of sensitization stereotypy0.20.20.2-0.50.40.5
Conditioned locomotion1.41.61.9-1.31.41.2
Cocaine response after cond. corrected0.60.70.80.9-0.9-0.8
Cocaine response after cond. not corrected1.92.12.21.5-1.4-1.4
Cocaine response before conditioning2.12.53.01.6-1.4-1.7
Saline control response0.20.30.40.5-0.6-0.5
Bone: connectivity density0.10.10.1-0.30.30.2
Bone: cortical apparent density9.212.112.7-3.43.63.4
Bone: cortical area0.60.91.6-1.00.31.3
Bone: cortical porosity0.00.00.0-0.00.10.0
Bone: cortical porosity0.30.30.30.5-0.6-0.5
Bone: cortical thickness0.61.01.7-1.10.41.3
Bone: cortical thickness0.50.61.0-0.90.31.0
Bone: cortical tissue density9.312.212.9-3.53.63.4
Condit. Reinf. active minus inactive responses0.60.60.70.8-0.8-0.8
Condit. Reinf. active-inactive response ratio2.72.93.01.7-1.7-1.7
Condit. Reinf. active responses0.10.10.20.4-0.3-0.4
Condit. Reinf. inactive responses1.82.22.2-1.41.51.5
Incentive salience index mean0.50.60.70.8-0.8-0.7
Condit. Reinf. lever presses0.10.10.10.3-0.2-0.3
Condit. Reinf. active minus inactive responses0.40.60.7-0.70.80.7
Condit. Reinf. active-inactive response ratio0.50.50.6-0.70.70.7
Condit. Reinf. active responses0.00.00.1-0.10.3-0.1
Condit. Reinf. inactive responses0.50.70.80.8-0.7-0.9
Condit. Reinf. lever presses1.62.12.41.5-1.3-1.5
Condit. Reinf. lever reinforcers received0.00.00.1-0.00.3-0.1
Conditioned reinforcement - actives2.22.22.3-1.51.51.5
Conditioned reinforcement - inactives0.30.40.4-0.60.60.6
Conditioned locomotion0.60.80.90.9-0.8-0.9
Patch foraging indifference point 0 sec4.47.08.8-2.63.02.4
Patch foraging indifference point AUC3.03.53.7-1.91.91.8
Delay disc. indifference point, 0s delay0.20.20.4-0.40.60.3
Delay disc. indifference point, 16s delay0.00.00.00.00.2-0.2
Delay disc. indifference point, 2s delay0.10.10.10.2-0.3-0.2
Delay disc. indifference point, 24s delay0.10.10.20.2-0.5-0.2
Delay disc. indifference point, 4s delay0.30.40.7-0.60.80.3
Delay disc. indifference point, 8s delay0.10.10.20.20.1-0.5
Indifference point function ln k0.40.50.7-0.80.60.8
Indifference point function log k0.40.50.7-0.80.60.8
Patch foraging total patch changes 0 sec5.08.010.3-2.73.22.5
Patch foraging total patch changes 12 sec4.96.48.5-2.42.92.2
Patch foraging total patch changes 18 sec2.73.55.7-1.62.41.4
Patch foraging total patch changes 24 sec0.50.61.1-0.61.00.5
Patch foraging total patch changes 6 sec2.94.35.9-2.02.41.8
Patch foraging time to switch 0 sec11.517.719.14.4-4.1-4.2
Patch foraging water rate 0 sec20.432.834.5-5.95.75.6
Patch foraging water rate 12 sec9.414.415.7-4.03.63.8
Patch foraging water rate 18 sec4.86.57.1-2.72.32.6
Patch foraging water rate 24 sec3.65.05.9-2.41.92.4
Patch foraging water rate 6 sec4.97.27.6-2.82.72.6
Seeking ratio, delayed vs. immediate footshock0.20.20.3-0.50.30.5
Distance traveled before self-admin0.00.00.00.1-0.1-0.1
Distance traveled after self-admin0.40.40.6-0.80.50.7
Extensor digitorum longus weight5.521.523.2-4.84.34.8
Bone: elastic displacement0.50.50.7-0.80.50.8
Bone: elastic work0.10.10.2-0.3-0.20.4
Bone: endosteal estimation0.30.60.90.8-0.9-0.7
Bone: endosteal perimeter0.10.20.50.2-0.7-0.1
Epididymis fat weight4.29.810.73.2-2.9-3.3
Delta time in closed arm before/after self-admin0.10.10.10.3-0.3-0.2
Delta time in open arm before/after self-admin0.50.40.5-0.60.70.7
Diff in mean of infusions in LGA sessions0.00.00.0-0.10.10.2
Delay discount exponential model param0.00.00.00.0-0.10.2
Extinction: sum of active levers before priming0.00.00.00.1-0.1-0.0
Active lever presses in extinction session 61.11.01.2-1.00.91.1
Bone: final force0.10.20.5-0.5-0.10.7
Bone: final moment0.20.30.6-0.5-0.20.8
Food consumed during 24 hour testing period0.10.10.1-0.30.10.4
Glucose1.11.61.9-1.21.41.2
Heart weight0.00.00.00.10.1-0.1
Delay discount hyperbolic model param0.00.00.1-0.0-0.10.3
Intermittent access intake day 1-15 change1.31.31.31.2-1.1-1.1
Intermittent access intake escalation1.51.51.61.3-1.2-1.2
Intermittent access intake escalation 20.20.20.30.4-0.6-0.3
Intermitt. access day 1 inactive lever presses2.72.93.1-1.81.61.7
Intermitt. access day 15 inactive lever presses1.01.01.1-1.01.01.0
Intermitt. access escalation Index0.40.40.5-0.60.70.5
Intermittent access day 1 total infusions0.30.40.50.7-0.5-0.7
Intermittent access day 15 total infusions1.71.92.11.4-1.2-1.4
Intermittent access terminal intake (last 3 days)1.71.92.31.3-1.2-1.5
Intermittent access total infusions0.60.60.80.8-0.6-0.9
Intermittent access day 1 locomotion0.80.91.01.0-0.8-1.0
Intermittent access day 15 total locomotion0.40.40.40.7-0.6-0.6
Intermittent access total locomotion0.40.50.50.7-0.6-0.7
Intermittent access standard deviation3.53.73.92.0-1.8-1.9
Left kidney weight0.82.22.8-1.41.71.3
Right kidney weight0.30.91.3-0.91.10.8
Cocaine induced anxiety2.83.33.5-1.91.71.9
Post-drug Anxiety2.42.72.8-1.71.51.7
Baseline Anxiety1.51.61.71.3-1.1-1.3
Tail length2.88.49.3-3.02.63.1
Length with tail4.315.616.2-4.03.93.9
Length without tail2.55.47.1-2.22.72.1
Times rat made contact with spout0.40.50.7-0.70.80.6
Lifetime Intake0.20.30.40.6-0.4-0.6
Liver weight, left2.64.15.1-2.11.62.3
Liver weight, right0.00.00.0-0.10.20.1
Locomotor activity0.20.30.5-0.40.70.3
Locomotor testing distance0.50.91.4-0.91.20.7
Locomotor testing rearing0.71.11.91.1-0.5-1.4
Locomotion in novel chamber5.26.47.0-2.62.42.6
Locomotion in novel chamber post-restriction0.30.40.90.5-0.9-0.3
Fecal boli incidents, locomotor time 12.62.94.01.6-2.0-1.4
Change in fecal boli incidents, locomotor task0.50.40.7-0.60.90.4
Time >=10cm from walls, locomotor time 10.40.40.50.6-0.7-0.7
Bouts of movement, locomotor time 11.61.72.41.2-1.5-1.1
Total resting periods, locomotor time 11.51.72.21.2-1.5-1.1
Rest time, locomotor task time 10.10.10.2-0.30.20.5
Distance moved, locomotor task time 10.10.10.30.30.0-0.5
Vertical activity count, locomotor time 10.90.91.2-1.01.10.8
Time >=10cm from walls, locomotor time 20.70.70.9-1.00.80.8
Bouts of movement, locomotor time 21.51.62.2-1.40.91.5
Total resting periods, locomotor time 21.11.21.6-1.20.81.3
Rest time, locomotor task time 20.20.20.3-0.50.10.6
Distance moved, locomotor task time 20.10.10.20.30.1-0.4
Vertical activity count, locomotor time 20.60.60.7-0.70.80.8
Light reinforcement 10.00.00.10.10.2-0.1
Light reinforcement 22.33.14.21.7-2.0-1.5
Bone: marrow area0.30.50.80.7-0.9-0.6
Bone: maximum diameter0.10.10.2-0.1-0.40.3
Bone: maximum force0.20.30.5-0.50.00.7
Bone: maximum moment0.10.20.5-0.5-0.20.7
Mean time between licks in bursts1.01.41.41.2-1.2-1.2
Mean num. licks in bursts0.10.10.2-0.10.40.1
Cd content in liver0.20.20.4-0.50.10.6
Co content in liver0.80.91.0-1.00.91.0
Cu content in liver1.11.31.31.1-1.1-1.1
Fe content in liver0.10.10.10.3-0.4-0.3
K content in liver0.20.20.3-0.40.50.3
Mg content in liver0.20.20.5-0.40.70.3
Mn content in liver0.10.10.2-0.10.40.1
Na content in liver0.00.00.00.1-0.1-0.1
Rb content in liver1.01.21.7-1.01.30.9
Se content in liver0.40.41.00.5-1.0-0.3
Sr content in liver0.20.20.3-0.4-0.00.5
Zn content in liver0.10.10.2-0.40.20.5
Bone: minimum diameter0.51.01.2-1.00.91.1
Time in familiar zone, hab. session 10.30.20.50.50.1-0.7
Time in novel zone, hab. session 10.40.40.90.4-0.9-0.3
Total zone transitions, hab. session 10.71.01.30.9-1.1-0.9
Total locomotion distance, hab. session 10.00.00.0-0.20.10.1
Locomotion velocity, hab. session 10.40.60.6-0.80.70.8
Time in familiar zone, hab. session 20.30.30.50.50.1-0.7
Time in novel zone, hab. session 20.30.30.70.4-0.8-0.2
Total zone transitions, hab. session 21.01.21.71.1-1.3-0.9
Total locomotion distance, hab. session 20.20.30.5-0.60.30.7
Locomotion velocity, hab. session 20.40.50.8-0.80.50.9
Novel to familiar place preference ratio0.60.60.90.7-0.9-0.6
Novelty place preference0.30.30.50.5-0.7-0.5
Time in novel zone, NPP test0.30.30.50.5-0.7-0.4
Total zone transitions, NPP test0.30.40.70.5-0.8-0.4
Total locomotion distance, NPP test0.00.10.2-0.0-0.40.2
Locomotion velocity, NPP test0.00.10.1-0.1-0.30.2
Intraocular pressure0.10.10.10.2-0.3-0.3
Delta distance traveled before/after self-admin0.00.00.0-0.1-0.10.1
Delta ambulatory time before/after self-admin0.40.40.5-0.70.50.7
Parametrial fat weight0.00.10.10.2-0.4-0.0
Pavlov. Cond. lever latency0.60.80.9-0.90.90.9
Pavlov. Cond. magazine entry latency0.40.50.60.8-0.6-0.8
Pavlov. Cond. change in total contacts0.20.20.30.5-0.1-0.5
Pavlov. Cond. index score1.01.31.31.1-1.2-1.1
Pavlov. Cond. latency score0.60.80.90.9-0.9-0.9
Pavlov. Cond. lever contacts0.80.91.01.0-0.9-1.0
Pavlov. Cond. magazine entry number1.11.41.5-1.21.11.2
Pavlov. Cond. intertrial magazine entries5.46.56.7-2.62.52.6
Pavlov. Cond. lever-magazine prob. diff.0.81.01.21.0-1.1-0.9
Pavlov. Cond. response bias1.21.51.51.2-1.2-1.2
Pavlov. Cond. lever latency2.53.33.5-1.91.81.8
Pavlov. Cond. magazine entry latency5.05.86.12.5-2.3-2.5
Pavlov. Cond. change in total contacts3.85.35.92.4-2.0-2.4
Pavlov. Cond. index score5.16.67.12.7-2.4-2.6
Pavlov. Cond. latency score5.06.26.72.6-2.3-2.6
Pavlov. Cond. lever contacts3.54.85.02.2-2.2-2.1
Pavlov. Cond. magazine entry number3.64.45.1-2.21.82.3
Pavlov. Cond. intertrial magazine entries6.28.09.1-2.83.02.7
Pavlov. Cond. lever-magazine prob. diff.5.57.07.72.8-2.4-2.8
Pavlov. Cond. response bias4.25.76.22.5-2.3-2.4
Time in closed arm before self-admin3.13.53.61.8-1.9-1.9
Time in closed arm after self-admin1.61.61.81.3-1.2-1.3
Time in open arm before self-admin5.45.85.9-2.42.42.4
Time in open arm after self-admin3.53.94.2-1.92.11.9
Bone: periosteal estimation0.10.10.2-0.2-0.40.4
Bone: periosteal perimeter0.10.10.3-0.1-0.50.3
Bone: post-yield work1.11.61.6-1.31.21.3
Progressive ratio test 1 active lever presses0.00.00.00.10.1-0.1
Progressive ratio test 1 breakpoint0.10.10.10.2-0.1-0.3
Progressive ratio test 1 inactive lever presses2.83.03.2-1.81.71.8
Progressive ratio test 2 active lever presses0.00.00.00.00.1-0.1
Progressive ratio test 2 breakpoint0.00.00.00.00.2-0.1
Progressive ratio test 2 inactive lever presses1.01.21.4-1.11.21.0
Incentive Sensitization - Responses0.00.00.00.1-0.0-0.1
Incentive Sensitization - Breakpoint0.00.00.0-0.00.1-0.0
Sum of active levers in priming session hrs 5-60.20.20.20.5-0.4-0.4
Progressive ratio0.30.40.5-0.60.50.7
Food seeking constrained by brief footshock1.41.82.3-1.41.01.5
Seeking ratio, punishment vs. effort0.10.10.1-0.40.20.3
Retroperitoneal fat weight0.30.91.11.0-1.0-0.9
Reaction time number correct3.95.67.0-2.32.62.1
Reaction time mean minus median0.30.40.60.6-0.8-0.5
Reaction time mean minus median AUC0.30.40.70.6-0.8-0.4
Reaction time num false alarms1.31.72.4-1.31.51.1
Reaction time num false alarms AUC1.62.32.7-1.51.61.4
Reaction time trials correct on left3.95.67.0-2.32.62.1
Reaction time trials on left3.85.56.8-2.32.62.1
Reaction time mean1.21.61.81.3-1.3-1.2
Reaction time mean AUC0.91.21.31.1-1.1-1.0
Median of all reaction times0.70.91.11.1-0.9-0.9
Reaction time omissions0.60.81.1-0.90.71.1
Reaction time false alarm rate0.10.10.1-0.40.30.3
Reaction time premature initiation rate0.91.11.4-1.01.21.0
Reaction time premature initiations3.04.25.1-2.02.31.9
Std. dev. reaction times0.81.11.71.0-1.3-0.8
Reaction time trials completed3.85.56.8-2.32.62.1
Reaction time trials AUC4.26.17.7-2.42.82.2
Run reversals in cocaine runway, females1.00.91.11.0-0.8-1.1
Run reversals in cocaine runway, males0.90.90.9-0.90.91.0
Latency to leave start box in cocaine runway0.10.10.10.10.3-0.3
Latency to leave start box in cocaine runway, F0.10.10.20.10.4-0.3
Latency to leave start box in cocaine runway, M0.10.10.10.2-0.2-0.3
Std. dev. time between licks in bursts0.91.11.31.0-1.2-0.9
Total sessions with >9 infusions0.00.00.00.10.1-0.2
Short access day 1 total inactive lever presses0.00.00.00.20.0-0.2
Short access day 10 total inactive lever presses0.40.40.4-0.60.60.6
Short access day 1 total infusions0.30.30.5-0.50.70.5
Short access day 10 total infusions0.30.30.50.6-0.3-0.7
Short access total infusions0.10.20.20.4-0.2-0.5
Short access day 1 locomotion0.50.50.70.7-0.4-0.9
Short access day 10 total locomotion0.50.60.70.8-0.6-0.8
Short access total locomotion0.00.00.10.20.0-0.3
One hour access (0.3 mA shock)0.10.10.2-0.30.40.3
Compulsive drug intake0.00.00.10.2-0.2-0.1
One hour access (shock baseline)0.00.00.00.1-0.1-0.1
Social response proportion0.50.60.9-0.70.90.6
Social responses0.00.00.00.1-0.0-0.2
Social time0.70.91.0-1.00.91.0
Soleus weight0.00.00.00.1-0.1-0.2
Bone: stiffness1.11.72.5-1.40.81.6
Tibialis anterior weight0.31.01.1-1.10.91.0
Time to tail flick, vehicle, before self-admin0.40.40.6-0.70.50.8
Time to tail flick, vehicle, after self-admin0.10.10.20.3-0.2-0.4
Time to tail flick, test, before self-admin0.10.10.2-0.30.40.3
Time to tail flick, test, after self-admin1.61.71.8-1.31.31.3
Delta time to tail flick, vehicle, before/after SA0.00.00.10.10.1-0.3
Delta time to tail flick, test, before/after SA0.70.70.9-0.80.60.9
Tibia length0.30.71.2-0.90.41.1
Ambulatory time before self-admin0.00.00.10.2-0.1-0.2
Ambulatory time after self-admin0.00.00.00.1-0.2-0.1
Bone: tissue strength0.10.10.1-0.2-0.20.3
Total heroin consumption0.91.01.4-1.00.81.2
Bone: trabecular number0.10.10.2-0.30.50.2
Bone: trabecular spacing0.20.20.50.3-0.7-0.2
Bone: trabecular thickness0.10.10.1-0.40.30.4
Bone: trabecular tissue density0.50.71.3-0.71.20.6
Water consumed over 24 hours3.33.93.9-2.02.02.0
Number of responses in last shaping day0.80.81.10.9-1.0-0.7