LOC120103627

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120103627 0.04 0.03 5.4e-04 0.02 0.02 0.02 0.02 1.5e-03 1.6e-03 2.0e-03 1.5e-03
2 NAcc gene expression LOC120103627 0.01 0.01 5.0e-03 0.01 0.01 0 0 2.6e-02 3.6e-02 4.8e-02 6.0e-02
3 Brain gene expression LOC120103627 0.03 0.03 7.0e-03 0.02 0.01 0.01 0.01 5.6e-03 3.3e-02 1.2e-02 1.9e-02
4 pVTA gene expression LOC120103627 0.07 0.07 3.6e-05 0.07 0.05 0.08 0.07 1.5e-06 9.0e-05 7.2e-07 3.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.5-0.3-0.5-0.1
Area under the delay curve0.50.61.9-0.3-0.20.6-1.4
BMI with tail3.010.413.4-3.6-3.5-1.6-3.7
BMI without tail2.26.89.3-3.0-2.9-1.5-2.7
Body weight0.21.03.70.40.51.90.2
Weight adjusted by age0.10.10.5-0.00.10.70.0
Bone surface0.00.10.2-0.5-0.1-0.2-0.1
Bone volume0.10.10.3-0.6-0.2-0.5-0.0
Breakpoint value in progressive ratio session0.20.20.50.20.3-0.3-0.7
Number of licking bursts0.20.30.90.10.30.90.2
Context. condit. distance diff. score1.31.62.21.51.41.01.1
Locomotion velocity, session 10.60.61.60.30.80.41.3
Locomotion distance, session 10.20.30.5-0.6-0.4-0.7-0.2
Locomotion velocity, session 20.10.10.10.1-0.3-0.3-0.4
Locomotion distance, session 20.30.40.5-0.6-0.5-0.7-0.6
Locomotion velocity, session 30.30.30.6-0.3-0.6-0.5-0.8
Locomotion distance, session 30.10.10.20.20.1-0.10.5
Stereotopy head waving bouts, day 30.20.20.50.40.40.7-0.2
Stereotopy head waving duration, day 30.20.30.40.60.60.60.3
Locomotion velocity, session 70.40.41.2-0.4-0.6-1.1-0.3
Locomotion distance, session 70.70.91.6-0.9-0.8-1.3-0.8
Stereotopy head waving bouts, day 70.60.71.40.80.80.51.2
Stereotopy head waving duration, day 70.30.30.60.60.50.40.8
Locomotion velocity, session 80.10.10.30.60.30.20.1
Locomotion distance, session 80.10.10.2-0.2-0.1-0.4-0.4
Degree of sensitization distance0.10.10.2-0.3-0.2-0.3-0.4
Degree of sensitization stereotypy0.50.51.80.40.40.11.3
Conditioned locomotion0.81.01.61.31.10.70.8
Cocaine response after cond. corrected0.40.50.8-0.9-0.7-0.3-0.9
Cocaine response after cond. not corrected1.61.92.4-1.5-1.4-1.0-1.6
Cocaine response before conditioning2.42.83.1-1.7-1.8-1.5-1.7
Saline control response0.20.20.4-0.5-0.2-0.6-0.3
Bone: connectivity density0.00.00.00.10.10.2-0.0
Bone: cortical apparent density6.89.311.83.43.13.12.5
Bone: cortical area0.61.01.50.71.21.01.0
Bone: cortical porosity0.00.00.10.20.1-0.10.1
Bone: cortical porosity0.20.30.4-0.4-0.4-0.6-0.5
Bone: cortical thickness0.50.91.70.81.30.60.9
Bone: cortical thickness0.80.91.30.91.10.61.1
Bone: cortical tissue density6.79.111.63.43.13.12.4
Condit. Reinf. active minus inactive responses0.50.60.7-0.9-0.7-0.8-0.6
Condit. Reinf. active-inactive response ratio2.42.63.1-1.8-1.6-1.7-1.3
Condit. Reinf. active responses0.20.30.5-0.5-0.5-0.7-0.4
Condit. Reinf. inactive responses1.61.92.51.61.41.31.3
Incentive salience index mean0.40.50.7-0.8-0.7-0.7-0.5
Condit. Reinf. lever presses0.10.10.2-0.4-0.4-0.5-0.2
Condit. Reinf. active minus inactive responses0.20.30.40.60.60.60.3
Condit. Reinf. active-inactive response ratio0.30.40.50.60.60.70.4
Condit. Reinf. active responses0.00.00.1-0.2-0.2-0.1-0.3
Condit. Reinf. inactive responses0.60.81.1-1.0-1.1-1.0-0.6
Condit. Reinf. lever presses1.62.22.8-1.5-1.6-1.7-1.1
Condit. Reinf. lever reinforcers received0.00.00.1-0.2-0.2-0.2-0.2
Conditioned reinforcement - actives0.50.92.40.80.80.11.5
Conditioned reinforcement - inactives0.40.51.80.30.3-0.41.3
Conditioned locomotion0.70.92.1-0.7-0.8-1.4-0.5
Patch foraging indifference point 0 sec2.13.94.72.22.02.11.6
Patch foraging indifference point AUC1.72.43.41.71.81.70.5
Delay disc. indifference point, 0s delay0.30.30.50.50.40.7-0.4
Delay disc. indifference point, 16s delay0.10.20.4-0.1-0.20.4-0.7
Delay disc. indifference point, 2s delay0.50.52.0-0.3-0.10.1-1.4
Delay disc. indifference point, 24s delay0.30.30.6-0.4-0.20.7-0.8
Delay disc. indifference point, 4s delay0.70.71.70.50.41.3-0.9
Delay disc. indifference point, 8s delay0.70.82.4-0.5-0.50.6-1.6
Indifference point function ln k0.61.13.30.50.80.41.8
Indifference point function log k0.61.13.30.50.80.41.8
Patch foraging total patch changes 0 sec2.24.15.22.32.12.11.6
Patch foraging total patch changes 12 sec2.83.64.82.22.11.91.1
Patch foraging total patch changes 18 sec0.81.22.71.61.20.80.3
Patch foraging total patch changes 24 sec0.10.20.50.50.40.7-0.3
Patch foraging total patch changes 6 sec1.62.44.91.71.52.20.2
Patch foraging time to switch 0 sec6.713.816.2-3.8-4.0-3.4-3.6
Patch foraging water rate 0 sec11.424.028.25.25.34.94.1
Patch foraging water rate 12 sec6.513.715.43.73.63.93.5
Patch foraging water rate 18 sec4.56.910.02.42.62.33.2
Patch foraging water rate 24 sec3.54.95.72.02.42.32.1
Patch foraging water rate 6 sec3.24.76.02.52.31.92.0
Seeking ratio, delayed vs. immediate footshock0.20.30.50.60.50.70.1
Distance traveled before self-admin0.30.40.7-0.8-0.8-0.30.1
Distance traveled after self-admin0.10.20.30.30.20.50.5
Extensor digitorum longus weight5.220.321.84.74.64.64.0
Bone: elastic displacement0.40.50.80.70.90.70.4
Bone: elastic work0.20.30.60.30.80.40.5
Bone: endosteal estimation0.10.30.8-0.9-0.6-0.1-0.4
Bone: endosteal perimeter0.00.10.1-0.40.00.40.1
Epididymis fat weight2.17.39.8-3.0-3.1-2.0-2.5
Delta time in closed arm before/after self-admin0.00.00.1-0.2-0.2-0.20.1
Delta time in open arm before/after self-admin0.90.91.80.90.91.30.6
Diff in mean of infusions in LGA sessions0.10.10.30.0-0.1-0.5-0.5
Delay discount exponential model param0.50.61.70.40.2-0.71.3
Extinction: sum of active levers before priming0.50.61.1-0.5-0.4-1.0-0.9
Active lever presses in extinction session 60.90.91.51.21.20.80.3
Bone: final force0.20.30.50.40.70.50.6
Bone: final moment0.20.40.60.40.80.50.8
Food consumed during 24 hour testing period0.10.10.20.20.30.4-0.2
Glucose0.81.32.11.11.20.71.5
Heart weight0.60.91.61.00.90.61.3
Delay discount hyperbolic model param0.50.51.60.30.1-0.71.3
Intermittent access intake day 1-15 change1.73.65.9-1.7-1.7-2.4-1.6
Intermittent access intake escalation1.63.35.1-1.7-1.7-2.3-1.6
Intermittent access intake escalation 20.70.91.8-0.9-0.8-1.3-0.4
Intermitt. access day 1 inactive lever presses0.20.61.40.50.70.51.2
Intermitt. access day 15 inactive lever presses0.81.73.51.01.10.91.9
Intermitt. access escalation Index0.91.32.50.60.61.6-1.4
Intermittent access day 1 total infusions0.20.40.5-0.7-0.7-0.6-0.4
Intermittent access day 15 total infusions1.82.64.0-1.4-1.4-1.6-2.0
Intermittent access terminal intake (last 3 days)2.12.84.0-1.7-1.6-2.0-1.3
Intermittent access total infusions1.21.51.9-1.1-1.1-1.4-1.2
Intermittent access day 1 locomotion1.62.02.6-1.6-1.5-1.6-0.7
Intermittent access day 15 total locomotion0.30.50.9-0.4-0.5-0.9-0.7
Intermittent access total locomotion1.21.42.1-0.9-1.0-1.3-1.5
Intermittent access standard deviation1.73.56.5-2.0-1.9-2.5-0.4
Left kidney weight0.73.24.31.91.92.11.3
Right kidney weight0.62.64.51.71.62.10.8
Cocaine induced anxiety2.73.85.41.81.91.72.3
Post-drug Anxiety4.44.75.72.32.42.02.0
Baseline Anxiety0.30.31.4-0.0-0.2-0.1-1.2
Tail length3.212.313.73.63.73.03.6
Length with tail5.222.624.34.94.84.44.8
Length without tail2.68.59.53.12.82.73.1
Times rat made contact with spout0.30.40.50.70.50.60.5
Lifetime Intake0.80.91.7-0.9-0.8-1.3-0.8
Liver weight, left2.44.05.81.81.92.41.8
Liver weight, right0.40.81.4-1.0-1.2-0.3-0.7
Locomotor activity0.10.10.30.5-0.00.1-0.5
Locomotor testing distance0.20.41.20.60.30.1-1.1
Locomotor testing rearing2.14.16.1-1.5-1.9-2.1-2.5
Locomotion in novel chamber2.32.94.41.81.82.10.8
Locomotion in novel chamber post-restriction0.10.20.6-0.20.00.40.8
Fecal boli incidents, locomotor time 10.91.42.5-1.6-1.2-0.4-1.2
Change in fecal boli incidents, locomotor task0.10.10.40.40.00.2-0.6
Time >=10cm from walls, locomotor time 10.30.30.5-0.6-0.6-0.2-0.7
Bouts of movement, locomotor time 10.91.01.8-1.3-0.7-0.5-1.2
Total resting periods, locomotor time 11.01.11.8-1.3-0.8-0.5-1.3
Rest time, locomotor task time 10.30.41.10.50.41.0-0.4
Distance moved, locomotor task time 10.71.02.8-0.7-0.8-1.70.0
Vertical activity count, locomotor time 10.30.71.90.70.7-0.01.4
Time >=10cm from walls, locomotor time 20.20.40.60.60.80.40.6
Bouts of movement, locomotor time 21.52.43.71.41.81.90.9
Total resting periods, locomotor time 21.11.93.51.21.51.90.8
Rest time, locomotor task time 20.70.92.80.50.61.7-0.6
Distance moved, locomotor task time 20.91.13.4-0.6-0.6-1.80.4
Vertical activity count, locomotor time 20.91.33.60.70.8-0.61.9
Light reinforcement 10.10.20.4-0.0-0.3-0.5-0.7
Light reinforcement 20.91.42.2-1.5-1.2-1.1-1.1
Bone: marrow area0.10.30.6-0.8-0.5-0.1-0.4
Bone: maximum diameter0.10.20.5-0.20.30.7-0.0
Bone: maximum force0.10.10.30.10.50.20.5
Bone: maximum moment0.10.20.40.10.50.10.6
Mean time between licks in bursts0.61.53.6-1.1-1.1-0.5-1.9
Mean num. licks in bursts0.10.10.50.30.0-0.70.1
Cd content in liver0.30.30.9-0.2-0.00.5-1.0
Co content in liver1.31.53.11.21.10.41.8
Cu content in liver0.30.40.6-0.8-0.8-0.4-0.6
Fe content in liver0.40.51.3-0.5-0.70.2-1.1
K content in liver0.50.40.70.80.50.50.8
Mg content in liver0.20.20.50.70.30.30.4
Mn content in liver0.40.41.0-0.5-0.6-1.0-0.4
Na content in liver0.10.10.1-0.3-0.10.2-0.3
Rb content in liver0.60.71.11.00.90.80.6
Se content in liver0.20.20.5-0.5-0.30.70.4
Sr content in liver0.20.20.30.20.60.40.5
Zn content in liver2.32.53.71.31.41.71.9
Bone: minimum diameter0.40.81.50.80.91.20.4
Time in familiar zone, hab. session 10.90.82.1-0.5-0.9-1.5-0.4
Time in novel zone, hab. session 10.20.20.4-0.4-0.10.6-0.4
Total zone transitions, hab. session 10.60.81.3-1.0-0.7-0.7-1.2
Total locomotion distance, hab. session 10.00.00.00.10.1-0.1-0.1
Locomotion velocity, hab. session 10.20.30.50.70.70.40.4
Time in familiar zone, hab. session 21.01.11.8-0.7-1.0-1.3-1.1
Time in novel zone, hab. session 20.10.10.3-0.20.00.60.1
Total zone transitions, hab. session 20.50.70.9-0.9-0.7-0.9-0.8
Total locomotion distance, hab. session 20.40.50.70.70.90.40.7
Locomotion velocity, hab. session 20.60.71.10.91.00.50.9
Novel to familiar place preference ratio0.20.20.3-0.6-0.4-0.50.1
Novelty place preference0.10.10.2-0.4-0.3-0.40.1
Time in novel zone, NPP test0.10.10.2-0.4-0.3-0.40.2
Total zone transitions, NPP test0.10.10.2-0.4-0.2-0.2-0.3
Total locomotion distance, NPP test0.00.00.10.10.20.10.3
Locomotion velocity, NPP test0.10.10.10.20.30.10.4
Intraocular pressure0.00.10.1-0.2-0.30.1-0.3
Delta distance traveled before/after self-admin0.10.10.50.0-0.0-0.7-0.2
Delta ambulatory time before/after self-admin0.30.30.70.80.80.10.2
Parametrial fat weight0.20.41.0-1.0-0.70.3-0.4
Pavlov. Cond. lever latency0.50.60.70.80.70.80.6
Pavlov. Cond. magazine entry latency0.70.81.2-0.8-0.8-1.1-0.9
Pavlov. Cond. change in total contacts0.50.61.4-0.5-0.6-1.2-0.4
Pavlov. Cond. index score0.81.11.4-1.1-0.9-1.2-0.9
Pavlov. Cond. latency score0.50.70.8-0.9-0.8-0.9-0.8
Pavlov. Cond. lever contacts0.91.11.4-1.1-1.1-1.2-0.7
Pavlov. Cond. magazine entry number1.01.31.81.11.11.31.1
Pavlov. Cond. intertrial magazine entries5.05.96.62.62.52.52.3
Pavlov. Cond. lever-magazine prob. diff.0.60.81.3-1.0-0.8-1.1-0.6
Pavlov. Cond. response bias1.62.03.0-1.4-1.3-1.7-1.1
Pavlov. Cond. lever latency2.22.94.81.81.72.20.9
Pavlov. Cond. magazine entry latency4.25.06.3-2.5-2.4-2.1-1.9
Pavlov. Cond. change in total contacts3.25.17.2-2.3-2.5-2.7-1.2
Pavlov. Cond. index score4.66.17.6-2.6-2.7-2.8-1.7
Pavlov. Cond. latency score4.55.97.3-2.6-2.7-2.7-1.6
Pavlov. Cond. lever contacts2.83.96.1-2.1-1.9-2.5-1.1
Pavlov. Cond. magazine entry number4.04.96.22.32.52.31.7
Pavlov. Cond. intertrial magazine entries3.75.67.92.82.52.02.1
Pavlov. Cond. lever-magazine prob. diff.5.26.98.6-2.8-2.9-2.9-1.8
Pavlov. Cond. response bias3.85.27.2-2.4-2.4-2.7-1.5
Time in closed arm before self-admin1.31.72.5-1.6-1.4-0.8-1.4
Time in closed arm after self-admin0.60.71.0-1.0-1.0-0.5-0.7
Time in open arm before self-admin1.71.82.31.51.51.31.1
Time in open arm after self-admin2.02.23.21.51.61.81.1
Bone: periosteal estimation0.10.20.50.00.50.70.4
Bone: periosteal perimeter0.10.10.3-0.20.30.50.2
Bone: post-yield work1.01.41.71.31.21.11.2
Progressive ratio test 1 active lever presses0.50.61.4-0.6-0.6-1.2-0.4
Progressive ratio test 1 breakpoint0.60.71.4-0.7-0.7-1.2-0.5
Progressive ratio test 1 inactive lever presses1.82.57.11.21.3-0.12.7
Progressive ratio test 2 active lever presses0.10.10.20.20.2-0.10.5
Progressive ratio test 2 breakpoint0.10.10.20.20.2-0.10.4
Progressive ratio test 2 inactive lever presses0.71.23.00.80.90.51.7
Incentive Sensitization - Responses0.30.41.20.20.30.31.1
Incentive Sensitization - Breakpoint0.30.41.10.30.40.41.0
Sum of active levers in priming session hrs 5-60.10.10.20.40.4-0.30.0
Progressive ratio0.10.20.30.50.40.50.3
Food seeking constrained by brief footshock1.92.43.11.61.81.11.7
Seeking ratio, punishment vs. effort0.10.20.40.30.5-0.20.6
Retroperitoneal fat weight0.10.20.4-0.6-0.60.5-0.1
Reaction time number correct1.83.54.62.11.91.81.5
Reaction time mean minus median0.00.10.2-0.5-0.30.4-0.1
Reaction time mean minus median AUC0.10.10.3-0.6-0.30.3-0.2
Reaction time num false alarms0.40.61.01.00.80.80.1
Reaction time num false alarms AUC0.71.21.71.21.21.30.3
Reaction time trials correct on left1.83.54.62.11.91.81.5
Reaction time trials on left1.93.54.62.11.91.91.5
Reaction time mean0.60.91.4-1.1-1.2-0.6-0.9
Reaction time mean AUC0.30.50.9-0.9-1.0-0.4-0.6
Median of all reaction times0.50.61.0-0.8-1.0-0.7-0.7
Reaction time omissions0.50.81.70.70.71.30.7
Reaction time false alarm rate0.10.10.10.20.20.4-0.3
Reaction time premature initiation rate0.60.91.41.11.20.90.4
Reaction time premature initiations1.62.83.81.91.91.61.1
Std. dev. reaction times0.10.20.6-0.7-0.50.3-0.1
Reaction time trials completed1.93.54.62.11.91.91.5
Reaction time trials AUC2.03.84.92.22.01.91.6
Run reversals in cocaine runway, females0.50.51.0-0.7-1.0-0.5-0.7
Run reversals in cocaine runway, males1.51.53.11.11.10.61.8
Latency to leave start box in cocaine runway0.50.61.8-0.3-0.5-0.4-1.3
Latency to leave start box in cocaine runway, F0.40.51.4-0.2-0.4-0.6-1.2
Latency to leave start box in cocaine runway, M0.30.30.8-0.3-0.40.3-0.9
Std. dev. time between licks in bursts0.81.11.8-1.0-0.8-1.0-1.3
Total sessions with >9 infusions0.60.72.1-0.6-0.6-1.4-0.1
Short access day 1 total inactive lever presses0.00.00.0-0.1-0.2-0.2-0.1
Short access day 10 total inactive lever presses0.00.10.2-0.3-0.10.40.3
Short access day 1 total infusions0.10.10.20.50.40.00.3
Short access day 10 total infusions1.11.42.2-1.1-1.1-1.5-0.9
Short access total infusions0.40.51.1-0.6-0.6-1.1-0.5
Short access day 1 locomotion0.60.81.7-0.7-0.8-1.3-0.5
Short access day 10 total locomotion2.13.85.0-1.9-1.9-2.2-1.8
Short access total locomotion0.50.61.2-0.6-0.7-1.1-0.7
One hour access (0.3 mA shock)0.10.10.2-0.10.1-0.40.5
Compulsive drug intake0.10.10.4-0.00.1-0.10.7
One hour access (shock baseline)0.10.10.2-0.10.0-0.3-0.5
Social response proportion0.30.30.80.50.30.90.3
Social responses0.00.00.1-0.1-0.3-0.20.2
Social time1.01.41.81.01.11.21.4
Soleus weight0.10.20.3-0.2-0.6-0.5-0.2
Bone: stiffness1.11.83.41.11.30.81.9
Tibialis anterior weight0.20.61.00.80.81.00.4
Time to tail flick, vehicle, before self-admin0.30.30.50.50.60.50.7
Time to tail flick, vehicle, after self-admin0.30.40.7-0.7-0.8-0.8-0.1
Time to tail flick, test, before self-admin0.00.00.1-0.10.2-0.20.1
Time to tail flick, test, after self-admin1.11.11.50.91.01.11.2
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.1-0.2-0.30.2
Delta time to tail flick, test, before/after SA0.70.81.20.70.61.01.1
Tibia length0.71.82.41.11.41.51.3
Ambulatory time before self-admin0.30.51.0-1.0-1.0-0.2-0.2
Ambulatory time after self-admin0.10.10.2-0.4-0.4-0.3-0.2
Bone: tissue strength0.40.40.80.40.70.90.1
Total heroin consumption2.12.54.11.92.00.91.2
Bone: trabecular number0.00.00.00.0-0.10.00.0
Bone: trabecular spacing0.10.10.4-0.20.10.00.6
Bone: trabecular thickness0.10.10.3-0.3-0.2-0.2-0.6
Bone: trabecular tissue density0.10.10.20.40.1-0.30.4
Water consumed over 24 hours2.23.04.21.91.72.01.1
Number of responses in last shaping day0.10.10.1-0.3-0.3-0.20.4