LOC120102855

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120102855 0.03 0.03 3.9e-03 0.02 0.02 0.02 0.02 4.1e-03 5.3e-03 2.7e-03 2.6e-03
2 Liver gene expression LOC120102855 0.43 0.09 0.0e+00 0.46 0.48 0.47 0.48 2.3e-57 2.3e-59 2.4e-58 1.3e-59
3 Adipose gene expression LOC120102855 0.26 0.1 0.0e+00 0.15 0.17 0.13 0.15 5.0e-16 3.7e-18 2.7e-14 1.4e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.61.02.1-0.91.5-0.1
Area under the delay curve0.20.20.5-0.1-0.7-0.4
BMI with tail0.92.95.7-1.72.4-0.3
BMI without tail3.36.89.9-3.22.5-2.1
Body weight2.18.611.3-3.43.1-2.2
Weight adjusted by age1.11.23.4-0.3-0.3-1.9
Bone surface0.91.62.8-1.71.0-1.0
Bone volume0.61.01.6-1.21.1-0.5
Breakpoint value in progressive ratio session1.11.32.3-0.2-1.2-1.5
Number of licking bursts4.85.710.2-2.63.2-0.6
Context. condit. distance diff. score0.40.51.01.0-0.40.6
Locomotion velocity, session 12.93.18.70.2-0.7-3.0
Locomotion distance, session 10.91.13.30.1-0.2-1.8
Locomotion velocity, session 21.01.22.5-1.01.6-0.2
Locomotion distance, session 21.11.53.0-0.61.1-1.7
Locomotion velocity, session 30.70.80.90.9-0.9-0.9
Locomotion distance, session 30.80.91.7-0.80.6-1.3
Stereotopy head waving bouts, day 30.50.61.0-1.00.2-0.9
Stereotopy head waving duration, day 30.30.30.8-0.90.4-0.2
Locomotion velocity, session 70.10.10.30.2-0.50.3
Locomotion distance, session 70.20.30.80.9-0.3-0.3
Stereotopy head waving bouts, day 73.13.55.3-2.22.3-0.8
Stereotopy head waving duration, day 72.42.95.2-2.31.8-0.6
Locomotion velocity, session 80.60.71.80.4-0.2-1.3
Locomotion distance, session 80.50.71.20.9-0.3-1.1
Degree of sensitization distance0.80.81.21.1-0.70.8
Degree of sensitization stereotypy1.82.03.0-1.61.7-0.4
Conditioned locomotion0.40.50.70.4-0.7-0.8
Cocaine response after cond. corrected1.01.11.90.5-1.4-1.0
Cocaine response after cond. not corrected0.91.01.90.0-1.1-1.4
Cocaine response before conditioning1.41.72.8-1.71.5-0.4
Saline control response2.93.85.1-2.31.5-2.0
Bone: connectivity density0.50.71.2-1.11.00.1
Bone: cortical apparent density0.50.71.9-0.20.41.4
Bone: cortical area2.94.46.5-2.62.5-0.6
Bone: cortical porosity0.50.61.31.1-0.20.6
Bone: cortical porosity0.20.20.40.60.30.2
Bone: cortical thickness1.32.14.0-1.52.00.5
Bone: cortical thickness0.20.20.40.30.30.7
Bone: cortical tissue density0.50.61.7-0.10.21.3
Condit. Reinf. active minus inactive responses0.10.10.3-0.10.5-0.2
Condit. Reinf. active-inactive response ratio1.11.21.91.4-0.91.0
Condit. Reinf. active responses1.92.33.2-1.71.8-1.0
Condit. Reinf. inactive responses3.33.95.5-2.42.3-1.0
Incentive salience index mean2.32.83.4-1.71.9-1.4
Condit. Reinf. lever presses7.49.911.3-3.43.2-2.9
Condit. Reinf. active minus inactive responses0.60.81.6-1.30.8-0.4
Condit. Reinf. active-inactive response ratio0.00.00.10.10.20.3
Condit. Reinf. active responses1.82.64.7-2.21.5-0.8
Condit. Reinf. inactive responses3.03.76.7-2.62.1-0.5
Condit. Reinf. lever presses2.02.75.2-2.31.7-0.0
Condit. Reinf. lever reinforcers received2.12.95.4-2.31.6-0.9
Conditioned reinforcement - actives0.20.20.3-0.60.30.3
Conditioned reinforcement - inactives0.00.00.00.2-0.0-0.2
Conditioned locomotion0.40.51.41.20.00.4
Patch foraging indifference point 0 sec1.82.98.2-0.7-0.5-2.9
Patch foraging indifference point AUC3.43.94.7-2.22.2-1.6
Delay disc. indifference point, 0s delay0.50.61.11.0-0.8-0.1
Delay disc. indifference point, 16s delay1.21.22.0-0.6-1.4-1.1
Delay disc. indifference point, 2s delay0.30.40.6-0.40.80.6
Delay disc. indifference point, 24s delay0.10.10.2-0.5-0.4-0.1
Delay disc. indifference point, 4s delay0.10.10.20.4-0.30.3
Delay disc. indifference point, 8s delay0.10.10.2-0.50.2-0.3
Indifference point function ln k0.81.22.31.0-1.50.4
Indifference point function log k0.81.22.31.0-1.50.4
Patch foraging total patch changes 0 sec1.82.97.8-0.90.1-2.8
Patch foraging total patch changes 12 sec0.81.01.3-1.01.0-1.1
Patch foraging total patch changes 18 sec0.81.01.5-1.20.0-1.2
Patch foraging total patch changes 24 sec2.02.53.5-1.71.0-1.9
Patch foraging total patch changes 6 sec2.63.87.5-1.80.9-2.7
Patch foraging time to switch 0 sec2.43.74.72.2-1.52.0
Patch foraging water rate 0 sec1.21.84.2-0.90.7-2.0
Patch foraging water rate 12 sec0.10.20.5-0.40.1-0.7
Patch foraging water rate 18 sec0.60.91.7-0.81.30.5
Patch foraging water rate 24 sec0.40.60.90.10.90.9
Patch foraging water rate 6 sec1.01.52.4-1.21.6-0.7
Seeking ratio, delayed vs. immediate footshock0.40.41.10.01.1-0.3
Distance traveled before self-admin2.32.53.5-0.91.9-1.8
Distance traveled after self-admin2.22.45.2-1.42.3-0.0
Extensor digitorum longus weight4.517.623.7-4.94.7-2.6
Bone: elastic displacement5.15.87.52.7-2.42.0
Bone: elastic work2.63.37.81.3-0.72.8
Bone: endosteal estimation1.02.22.9-1.70.8-1.7
Bone: endosteal perimeter1.94.06.2-2.51.1-2.1
Epididymis fat weight0.81.92.2-1.41.2-1.5
Delta time in closed arm before/after self-admin1.11.11.6-1.21.30.3
Delta time in open arm before/after self-admin0.40.40.7-0.8-0.7-0.3
Diff in mean of infusions in LGA sessions0.20.20.40.5-0.60.3
Delay discount exponential model param0.20.20.60.00.80.4
Extinction: sum of active levers before priming1.21.21.61.3-1.20.7
Active lever presses in extinction session 60.20.20.3-0.5-0.4-0.4
Bone: final force1.42.33.4-1.81.8-0.6
Bone: final moment1.22.03.2-1.81.6-0.3
Food consumed during 24 hour testing period2.22.74.1-2.01.1-1.6
Glucose1.11.62.5-1.61.0-1.2
Heart weight2.33.25.6-2.41.4-1.4
Delay discount hyperbolic model param0.20.20.5-0.10.70.4
Intermittent access intake day 1-15 change0.80.81.6-1.30.50.6
Intermittent access intake escalation0.60.61.7-1.30.30.0
Intermittent access intake escalation 20.90.91.1-1.11.00.7
Intermitt. access day 1 inactive lever presses0.60.72.01.40.1-0.3
Intermitt. access day 15 inactive lever presses0.20.20.40.50.1-0.6
Intermitt. access escalation Index0.40.30.5-0.50.5-0.7
Intermittent access day 1 total infusions1.11.32.21.3-1.5-0.0
Intermittent access day 15 total infusions0.10.10.3-0.1-0.5-0.0
Intermittent access terminal intake (last 3 days)0.10.10.2-0.40.1-0.2
Intermittent access total infusions0.00.10.10.2-0.2-0.3
Intermittent access day 1 locomotion2.93.05.42.3-1.80.4
Intermittent access day 15 total locomotion1.31.43.11.0-1.80.5
Intermittent access total locomotion2.02.33.81.9-1.21.2
Intermittent access standard deviation0.00.00.0-0.20.20.0
Left kidney weight1.85.28.3-2.90.9-2.5
Right kidney weight1.64.58.8-3.00.3-2.2
Cocaine induced anxiety0.40.40.70.7-0.80.3
Post-drug Anxiety0.10.20.30.10.5-0.4
Baseline Anxiety0.60.61.6-0.41.3-0.1
Tail length1.95.88.6-2.92.0-2.2
Length with tail1.03.75.5-2.11.2-2.4
Length without tail0.20.50.91.0-0.7-0.3
Times rat made contact with spout0.30.40.7-0.20.80.7
Lifetime Intake0.40.41.1-0.2-0.2-1.1
Liver weight, left0.91.42.1-1.31.4-0.8
Liver weight, right0.20.30.6-0.8-0.3-0.6
Locomotor activity0.10.10.20.5-0.10.2
Locomotor testing distance0.20.30.8-0.1-0.3-0.9
Locomotor testing rearing0.40.61.2-0.40.7-1.1
Locomotion in novel chamber0.50.61.00.81.00.3
Locomotion in novel chamber post-restriction3.23.86.7-2.22.6-0.0
Fecal boli incidents, locomotor time 11.21.33.20.5-1.80.6
Change in fecal boli incidents, locomotor task0.80.71.20.31.1-0.9
Time >=10cm from walls, locomotor time 10.10.10.20.2-0.5-0.3
Bouts of movement, locomotor time 11.31.42.21.5-1.20.9
Total resting periods, locomotor time 11.92.02.21.5-1.31.5
Rest time, locomotor task time 11.92.15.80.60.02.4
Distance moved, locomotor task time 11.01.13.20.00.1-1.8
Vertical activity count, locomotor time 11.11.13.3-0.30.2-1.8
Time >=10cm from walls, locomotor time 20.50.51.21.1-0.7-0.1
Bouts of movement, locomotor time 22.42.65.3-2.31.3-1.0
Total resting periods, locomotor time 21.81.94.1-2.01.0-0.7
Rest time, locomotor task time 20.50.61.40.3-0.51.2
Distance moved, locomotor task time 20.40.41.21.1-0.00.4
Vertical activity count, locomotor time 20.10.10.30.20.0-0.6
Light reinforcement 12.54.69.4-2.00.4-3.1
Light reinforcement 22.73.68.7-1.5-0.1-2.9
Bone: marrow area1.02.13.0-1.70.9-1.6
Bone: maximum diameter3.36.110.0-3.22.5-1.4
Bone: maximum force3.15.47.6-2.72.8-1.0
Bone: maximum moment2.64.46.5-2.52.5-0.7
Mean time between licks in bursts0.20.30.6-0.5-0.8-0.1
Mean num. licks in bursts3.13.85.52.1-2.31.1
Cd content in liver1.61.72.9-1.71.40.5
Co content in liver0.50.61.70.0-1.3-0.1
Cu content in liver0.50.61.50.5-0.21.2
Fe content in liver3.23.85.8-2.4-0.0-2.4
K content in liver0.40.40.70.7-0.8-0.2
Mg content in liver0.80.91.21.1-1.10.5
Mn content in liver0.60.61.4-0.41.20.6
Na content in liver0.50.50.60.8-0.70.5
Rb content in liver3.13.87.02.0-2.60.8
Se content in liver1.62.04.8-1.12.20.2
Sr content in liver0.30.30.8-0.20.90.1
Zn content in liver0.40.40.90.50.40.9
Bone: minimum diameter0.00.10.1-0.4-0.00.2
Time in familiar zone, hab. session 12.42.25.80.80.62.4
Time in novel zone, hab. session 12.42.33.8-0.2-1.9-1.8
Total zone transitions, hab. session 10.60.92.31.5-0.40.3
Total locomotion distance, hab. session 10.81.11.70.71.11.3
Locomotion velocity, hab. session 10.91.23.1-0.11.80.7
Time in familiar zone, hab. session 21.01.13.00.4-0.31.7
Time in novel zone, hab. session 21.21.21.70.7-1.3-1.2
Total zone transitions, hab. session 20.40.51.60.10.2-1.3
Total locomotion distance, hab. session 20.50.71.5-0.71.2-0.4
Locomotion velocity, hab. session 20.60.81.8-0.81.3-0.3
Novel to familiar place preference ratio2.93.05.81.8-2.4-0.1
Novelty place preference4.04.07.02.3-2.60.2
Time in novel zone, NPP test4.74.98.42.5-2.90.3
Total zone transitions, NPP test0.40.61.60.10.5-1.3
Total locomotion distance, NPP test1.01.31.8-0.81.3-1.3
Locomotion velocity, NPP test1.21.62.2-1.11.5-1.2
Intraocular pressure1.31.92.3-1.51.1-1.4
Delta distance traveled before/after self-admin0.20.30.4-0.60.20.6
Delta ambulatory time before/after self-admin0.20.20.5-0.20.10.7
Parametrial fat weight0.20.40.70.60.0-0.8
Pavlov. Cond. lever latency5.46.98.72.6-3.02.2
Pavlov. Cond. magazine entry latency0.70.91.8-1.30.6-0.7
Pavlov. Cond. change in total contacts1.31.42.0-1.01.1-1.4
Pavlov. Cond. index score2.73.44.6-2.12.0-1.2
Pavlov. Cond. latency score2.33.04.0-2.01.8-1.2
Pavlov. Cond. lever contacts3.84.55.6-2.22.4-1.7
Pavlov. Cond. magazine entry number0.81.01.81.3-0.90.6
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.10.4-0.2
Pavlov. Cond. lever-magazine prob. diff.2.22.84.0-2.01.9-0.9
Pavlov. Cond. response bias2.53.14.1-2.01.8-1.4
Pavlov. Cond. lever latency1.72.23.61.9-1.8-0.2
Pavlov. Cond. magazine entry latency0.10.20.3-0.3-0.40.5
Pavlov. Cond. change in total contacts0.81.21.8-0.90.91.4
Pavlov. Cond. index score0.40.50.7-0.70.40.8
Pavlov. Cond. latency score0.50.60.8-0.80.60.9
Pavlov. Cond. lever contacts1.01.42.8-1.71.20.1
Pavlov. Cond. magazine entry number0.40.51.50.0-0.3-1.2
Pavlov. Cond. intertrial magazine entries0.30.40.5-0.50.6-0.7
Pavlov. Cond. lever-magazine prob. diff.0.40.50.8-0.80.50.9
Pavlov. Cond. response bias0.50.71.2-1.10.80.5
Time in closed arm before self-admin1.82.13.11.5-1.81.0
Time in closed arm after self-admin0.40.40.60.8-0.40.5
Time in open arm before self-admin1.01.12.30.01.0-1.5
Time in open arm after self-admin1.21.31.8-1.20.7-1.3
Bone: periosteal estimation1.83.75.8-2.41.8-1.4
Bone: periosteal perimeter2.03.45.9-2.41.0-1.8
Bone: post-yield work3.14.27.7-2.81.3-1.8
Progressive ratio test 1 active lever presses0.20.20.50.7-0.1-0.4
Progressive ratio test 1 breakpoint0.30.30.60.8-0.1-0.5
Progressive ratio test 1 inactive lever presses0.70.81.70.7-0.5-1.3
Progressive ratio test 2 active lever presses0.60.71.0-0.4-1.0-0.9
Progressive ratio test 2 breakpoint0.50.51.1-0.2-1.1-0.6
Progressive ratio test 2 inactive lever presses0.10.10.30.2-0.2-0.6
Incentive Sensitization - Responses0.50.50.6-0.8-0.8-0.5
Incentive Sensitization - Breakpoint0.50.50.8-0.8-0.9-0.4
Sum of active levers in priming session hrs 5-62.01.95.5-0.0-2.4-0.4
Progressive ratio0.20.20.4-0.1-0.6-0.5
Food seeking constrained by brief footshock6.17.59.0-3.02.5-2.7
Seeking ratio, punishment vs. effort1.92.33.4-1.61.8-1.0
Retroperitoneal fat weight0.10.20.20.4-0.40.5
Reaction time number correct0.30.40.6-0.8-0.4-0.6
Reaction time mean minus median1.41.84.1-0.51.12.0
Reaction time mean minus median AUC1.41.82.1-1.31.41.3
Reaction time num false alarms0.40.50.8-0.60.60.9
Reaction time num false alarms AUC0.71.01.9-1.41.00.1
Reaction time trials correct on left0.30.40.6-0.8-0.4-0.6
Reaction time trials on left0.30.40.6-0.8-0.5-0.5
Reaction time mean1.52.15.90.5-0.42.4
Reaction time mean AUC1.82.46.80.5-0.52.6
Median of all reaction times1.52.04.30.8-1.12.1
Reaction time omissions0.50.71.2-0.8-1.10.7
Reaction time false alarm rate0.20.30.6-0.10.60.8
Reaction time premature initiation rate3.95.27.42.7-2.21.8
Reaction time premature initiations2.63.75.02.0-2.21.3
Std. dev. reaction times1.52.16.20.40.22.5
Reaction time trials completed0.30.40.6-0.8-0.5-0.5
Reaction time trials AUC0.20.30.3-0.6-0.5-0.4
Run reversals in cocaine runway, females1.51.43.41.80.30.9
Run reversals in cocaine runway, males0.60.61.41.2-0.20.5
Latency to leave start box in cocaine runway0.60.71.7-0.21.3-0.5
Latency to leave start box in cocaine runway, F0.20.20.40.3-0.4-0.6
Latency to leave start box in cocaine runway, M1.41.42.9-0.31.7-1.0
Std. dev. time between licks in bursts0.30.30.70.0-0.90.5
Total sessions with >9 infusions0.70.82.1-0.1-0.6-1.4
Short access day 1 total inactive lever presses0.70.81.50.90.2-1.2
Short access day 10 total inactive lever presses0.20.20.20.40.5-0.5
Short access day 1 total infusions1.41.54.1-0.60.3-2.0
Short access day 10 total infusions0.50.61.30.2-0.6-1.1
Short access total infusions0.70.82.1-0.2-0.4-1.5
Short access day 1 locomotion0.80.81.31.1-1.1-0.2
Short access day 10 total locomotion1.11.21.71.3-0.91.0
Short access total locomotion1.11.22.61.6-0.90.1
One hour access (0.3 mA shock)0.40.50.8-0.1-0.9-0.9
Compulsive drug intake0.00.00.0-0.0-0.1-0.2
One hour access (shock baseline)0.50.61.00.4-0.9-1.0
Social response proportion1.81.93.61.9-1.11.0
Social responses0.10.10.2-0.30.4-0.3
Social time0.70.91.8-1.4-0.7-0.7
Soleus weight1.23.55.9-2.0-0.9-2.4
Bone: stiffness3.75.88.6-2.72.9-1.2
Tibialis anterior weight6.020.628.1-5.34.7-3.4
Time to tail flick, vehicle, before self-admin0.91.02.10.8-1.50.4
Time to tail flick, vehicle, after self-admin0.50.61.3-1.10.3-0.6
Time to tail flick, test, before self-admin0.10.10.30.00.50.2
Time to tail flick, test, after self-admin0.30.40.9-0.40.20.9
Delta time to tail flick, vehicle, before/after SA1.41.42.9-1.70.9-0.6
Delta time to tail flick, test, before/after SA0.40.30.70.1-0.90.5
Tibia length1.02.84.2-2.00.3-2.1
Ambulatory time before self-admin1.61.73.2-0.61.2-1.8
Ambulatory time after self-admin1.21.32.0-1.21.4-0.8
Bone: tissue strength0.30.20.4-0.70.5-0.1
Total heroin consumption0.60.61.20.6-1.1-0.6
Bone: trabecular number0.71.02.0-1.01.40.1
Bone: trabecular spacing0.20.20.3-0.30.60.5
Bone: trabecular thickness0.20.20.30.6-0.30.4
Bone: trabecular tissue density1.62.25.4-0.92.3-0.6
Water consumed over 24 hours1.62.02.9-1.71.5-0.8
Number of responses in last shaping day2.93.07.2-1.3-0.5-2.7