LOC120101646

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression LOC120101646 0.24 0.1 1.2e-04 0.05 0.05 0.04 0.04 6.5e-05 4.3e-05 1.4e-04 3.5e-04
2 NAcc gene expression LOC120101646 0.15 0.07 3.6e-05 0.03 0.03 0.02 0.02 6.6e-05 2.3e-05 1.8e-04 1.7e-04
3 Adipose gene expression LOC120101646 0.77 0.03 0.0e+00 0.24 0.23 0.32 0.31 6.2e-26 1.0e-25 1.8e-36 8.1e-35
4 Liver gene expression LOC120101646 0.51 0.11 0.0e+00 0.11 0.04 0.11 0.12 4.1e-12 1.8e-05 2.1e-12 7.3e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.11.9-1.1-0.7-1.4-0.9
Area under the delay curve0.80.92.00.30.01.41.3
BMI with tail0.20.71.4-0.9-0.6-1.2-0.5
BMI without tail3.410.416.6-3.5-2.4-4.1-2.6
Body weight1.35.510.0-3.2-2.9-1.9-0.5
Weight adjusted by age2.03.06.1-2.5-2.2-0.31.0
Bone surface0.10.20.20.30.5-0.4-0.5
Bone volume0.10.30.60.60.8-0.2-0.1
Breakpoint value in progressive ratio session5.86.912.43.53.41.80.3
Number of licking bursts0.91.53.31.61.8-0.0-0.2
Context. condit. distance diff. score2.93.44.3-2.1-1.8-2.0-1.5
Locomotion velocity, session 10.10.10.20.20.10.4-0.1
Locomotion distance, session 10.70.91.3-1.1-1.0-0.7-0.9
Locomotion velocity, session 20.50.61.2-1.1-0.9-0.6-0.3
Locomotion distance, session 21.31.82.7-1.2-0.8-1.6-1.6
Locomotion velocity, session 32.63.04.01.61.32.01.9
Locomotion distance, session 33.84.27.52.72.71.20.6
Stereotopy head waving bouts, day 31.01.21.7-1.1-1.30.61.2
Stereotopy head waving duration, day 31.41.72.9-1.5-1.70.31.2
Locomotion velocity, session 70.40.50.7-0.6-0.4-0.8-0.8
Locomotion distance, session 71.11.42.6-0.8-0.4-1.5-1.6
Stereotopy head waving bouts, day 71.41.63.10.70.31.71.8
Stereotopy head waving duration, day 71.72.14.20.70.21.92.1
Locomotion velocity, session 81.92.23.9-2.0-1.8-1.1-0.8
Locomotion distance, session 83.85.66.7-2.6-2.2-2.5-2.2
Degree of sensitization distance3.03.15.0-2.2-2.1-1.4-1.0
Degree of sensitization stereotypy1.11.22.10.60.21.41.5
Conditioned locomotion1.92.13.1-1.6-1.2-1.8-1.2
Cocaine response after cond. corrected3.84.510.22.83.2-0.1-0.1
Cocaine response after cond. not corrected3.23.78.32.52.9-0.1-0.3
Cocaine response before conditioning0.91.02.2-1.3-1.50.1-0.5
Saline control response1.62.13.9-1.6-2.00.51.2
Bone: connectivity density1.01.62.9-1.7-1.6-0.8-0.5
Bone: cortical apparent density1.72.34.82.02.20.50.4
Bone: cortical area0.40.61.21.01.10.40.5
Bone: cortical porosity0.80.92.4-0.4-0.2-1.0-1.6
Bone: cortical porosity0.30.30.9-0.3-0.2-0.4-1.0
Bone: cortical thickness0.40.71.51.11.20.2-0.1
Bone: cortical thickness5.46.311.13.33.31.60.9
Bone: cortical tissue density1.92.75.22.22.30.70.5
Condit. Reinf. active minus inactive responses1.21.42.4-1.4-1.60.11.0
Condit. Reinf. active-inactive response ratio0.70.71.2-0.8-0.90.41.1
Condit. Reinf. active responses1.62.03.6-1.9-1.9-0.20.8
Condit. Reinf. inactive responses0.60.81.7-1.3-1.0-0.6-0.2
Incentive salience index mean1.92.34.7-2.0-2.20.00.8
Condit. Reinf. lever presses2.43.47.2-2.5-2.7-0.30.2
Condit. Reinf. active minus inactive responses5.06.412.0-3.5-3.1-2.0-0.3
Condit. Reinf. active-inactive response ratio5.66.511.2-3.4-2.8-2.6-0.6
Condit. Reinf. active responses2.43.46.4-2.5-2.5-0.90.3
Condit. Reinf. inactive responses1.41.84.40.4-0.22.11.6
Condit. Reinf. lever presses1.92.64.9-1.0-1.51.52.2
Condit. Reinf. lever reinforcers received2.84.07.7-2.7-2.8-0.70.5
Conditioned reinforcement - actives0.10.20.30.30.5-0.50.4
Conditioned reinforcement - inactives0.10.20.5-0.3-0.3-0.7-0.2
Conditioned locomotion2.93.87.7-2.5-2.8-0.90.5
Patch foraging indifference point 0 sec3.36.114.70.4-0.63.03.8
Patch foraging indifference point AUC0.40.60.90.90.91.00.4
Delay disc. indifference point, 0s delay1.61.83.40.90.81.81.6
Delay disc. indifference point, 16s delay4.44.97.42.41.82.71.8
Delay disc. indifference point, 2s delay1.61.83.3-1.8-1.4-1.3-0.3
Delay disc. indifference point, 24s delay0.91.02.31.00.31.50.7
Delay disc. indifference point, 4s delay0.50.61.2-1.1-0.9-0.30.1
Delay disc. indifference point, 8s delay1.92.34.60.90.42.21.9
Indifference point function ln k0.30.51.4-0.5-0.4-1.2-0.5
Indifference point function log k0.30.51.4-0.5-0.4-1.2-0.5
Patch foraging total patch changes 0 sec3.56.615.00.9-0.23.33.9
Patch foraging total patch changes 12 sec1.51.94.8-0.5-0.91.32.2
Patch foraging total patch changes 18 sec0.91.42.90.90.31.71.4
Patch foraging total patch changes 24 sec1.32.23.4-1.5-1.80.91.6
Patch foraging total patch changes 6 sec1.82.84.51.30.72.02.1
Patch foraging time to switch 0 sec0.20.50.8-0.4-0.70.70.9
Patch foraging water rate 0 sec0.30.71.41.11.20.2-0.0
Patch foraging water rate 12 sec1.73.67.42.12.7-0.7-1.3
Patch foraging water rate 18 sec1.42.14.71.92.20.1-0.5
Patch foraging water rate 24 sec1.82.55.82.02.4-0.1-0.1
Patch foraging water rate 6 sec2.53.78.32.32.9-0.3-1.1
Seeking ratio, delayed vs. immediate footshock1.11.32.1-1.1-0.7-1.4-1.2
Distance traveled before self-admin0.30.30.5-0.6-0.5-0.7-0.5
Distance traveled after self-admin1.41.73.21.61.81.00.3
Extensor digitorum longus weight0.41.62.91.71.60.90.3
Bone: elastic displacement1.92.23.81.61.21.91.0
Bone: elastic work3.24.26.42.21.72.51.7
Bone: endosteal estimation0.10.10.20.30.4-0.3-0.4
Bone: endosteal perimeter0.10.10.4-0.4-0.1-0.6-0.1
Epididymis fat weight0.20.71.1-1.0-0.6-0.9-0.7
Delta time in closed arm before/after self-admin3.12.94.7-1.9-1.1-2.2-1.4
Delta time in open arm before/after self-admin0.80.81.2-0.8-0.3-1.1-1.1
Diff in mean of infusions in LGA sessions0.20.30.60.50.40.80.4
Delay discount exponential model param0.40.40.80.20.4-0.9-0.9
Extinction: sum of active levers before priming3.13.46.22.52.31.50.1
Active lever presses in extinction session 60.30.30.80.30.9-0.2-0.6
Bone: final force0.10.20.50.00.3-0.7-0.3
Bone: final moment0.10.10.30.30.5-0.3-0.1
Food consumed during 24 hour testing period0.81.22.4-0.30.2-1.5-1.5
Glucose0.30.50.80.20.6-0.9-0.9
Heart weight2.23.54.6-2.1-1.8-2.1-1.3
Delay discount hyperbolic model param0.30.40.50.50.7-0.5-0.7
Intermittent access intake day 1-15 change0.81.63.3-1.0-0.3-1.8-1.5
Intermittent access intake escalation0.51.02.2-0.7-0.1-1.5-1.1
Intermittent access intake escalation 21.71.93.10.41.2-1.7-1.8
Intermitt. access day 1 inactive lever presses1.03.87.5-2.7-2.7-0.70.3
Intermitt. access day 15 inactive lever presses1.43.04.9-2.2-2.0-1.6-0.6
Intermitt. access escalation Index0.20.30.70.1-0.20.60.8
Intermittent access day 1 total infusions0.50.71.60.3-0.21.11.2
Intermittent access day 15 total infusions0.10.10.2-0.5-0.3-0.50.1
Intermittent access terminal intake (last 3 days)0.20.30.80.50.9-0.4-0.2
Intermittent access total infusions0.20.20.5-0.3-0.50.20.7
Intermittent access day 1 locomotion1.52.04.2-1.6-2.10.40.9
Intermittent access day 15 total locomotion1.22.23.6-1.9-1.4-1.6-0.9
Intermittent access total locomotion1.41.73.2-1.7-1.8-0.8-0.1
Intermittent access standard deviation0.10.20.50.10.5-0.7-0.4
Left kidney weight3.114.625.1-5.0-4.8-2.8-1.5
Right kidney weight3.917.830.3-5.5-5.4-2.9-1.8
Cocaine induced anxiety7.811.220.6-4.5-4.5-1.9-0.8
Post-drug Anxiety11.812.620.6-4.5-4.3-2.8-2.1
Baseline Anxiety0.91.12.01.31.40.1-0.8
Tail length3.313.020.6-4.5-3.6-3.7-2.1
Length with tail1.35.810.7-3.3-3.0-1.8-0.4
Length without tail0.30.91.70.1-0.61.31.3
Times rat made contact with spout0.20.30.8-0.3-0.40.10.9
Lifetime Intake0.40.51.10.60.40.71.0
Liver weight, left2.64.28.0-2.8-2.7-1.30.2
Liver weight, right0.30.51.0-0.0-0.41.01.0
Locomotor activity0.00.00.10.30.10.1-0.2
Locomotor testing distance0.00.10.10.30.10.40.0
Locomotor testing rearing0.30.50.7-0.8-0.9-0.7-0.5
Locomotion in novel chamber0.20.30.50.50.20.50.7
Locomotion in novel chamber post-restriction0.71.11.3-1.1-0.9-1.1-1.0
Fecal boli incidents, locomotor time 12.33.46.32.42.50.90.7
Change in fecal boli incidents, locomotor task3.83.76.1-2.5-2.2-1.7-1.0
Time >=10cm from walls, locomotor time 11.51.63.11.11.8-1.0-1.1
Bouts of movement, locomotor time 14.34.99.52.93.11.20.5
Total resting periods, locomotor time 12.32.65.62.02.40.70.4
Rest time, locomotor task time 10.20.20.60.10.5-0.8-0.2
Distance moved, locomotor task time 11.32.05.50.80.12.31.3
Vertical activity count, locomotor time 10.00.00.00.0-0.10.20.0
Time >=10cm from walls, locomotor time 22.43.56.4-2.5-2.2-1.7-0.2
Bouts of movement, locomotor time 21.11.82.61.31.61.21.2
Total resting periods, locomotor time 20.91.62.31.21.51.11.2
Rest time, locomotor task time 21.01.33.00.70.8-1.1-1.7
Distance moved, locomotor task time 20.91.01.2-0.8-1.11.11.1
Vertical activity count, locomotor time 20.20.20.4-0.5-0.6-0.10.6
Light reinforcement 11.84.58.2-2.3-2.90.62.0
Light reinforcement 20.61.01.9-1.4-1.3-0.4-0.2
Bone: marrow area0.00.10.10.20.3-0.3-0.3
Bone: maximum diameter0.10.10.6-0.10.0-0.00.8
Bone: maximum force0.10.30.4-0.6-0.5-0.5-0.2
Bone: maximum moment0.00.10.1-0.3-0.3-0.2-0.2
Mean time between licks in bursts0.20.40.80.60.9-0.0-0.8
Mean num. licks in bursts1.32.04.3-1.8-2.10.10.6
Cd content in liver0.20.20.30.50.50.20.6
Co content in liver2.42.85.12.32.30.90.3
Cu content in liver0.81.02.6-0.20.3-1.6-1.0
Fe content in liver0.20.30.5-0.5-0.5-0.40.7
K content in liver1.11.12.9-0.20.4-1.7-1.1
Mg content in liver1.71.74.01.52.0-0.6-0.4
Mn content in liver0.91.02.0-1.4-1.3-0.5-0.1
Na content in liver1.11.21.7-1.3-1.2-1.0-0.8
Rb content in liver2.52.95.62.32.40.7-0.3
Se content in liver0.30.30.70.70.80.10.2
Sr content in liver0.40.30.5-0.6-0.7-0.4-0.5
Zn content in liver1.82.03.20.51.2-1.7-1.8
Bone: minimum diameter0.10.10.2-0.3-0.40.40.4
Time in familiar zone, hab. session 12.01.93.71.91.90.80.0
Time in novel zone, hab. session 11.31.32.7-1.5-1.6-0.40.3
Total zone transitions, hab. session 10.50.71.0-0.8-0.6-0.8-1.0
Total locomotion distance, hab. session 11.21.72.2-1.4-1.0-1.5-1.4
Locomotion velocity, hab. session 11.11.52.1-1.4-1.1-1.3-1.1
Time in familiar zone, hab. session 22.32.54.22.02.01.10.7
Time in novel zone, hab. session 22.52.54.5-2.1-2.1-1.0-0.5
Total zone transitions, hab. session 21.72.23.5-1.1-0.7-1.9-1.8
Total locomotion distance, hab. session 22.63.44.4-2.1-1.6-2.0-1.5
Locomotion velocity, hab. session 22.12.83.9-2.0-1.6-1.7-1.3
Novel to familiar place preference ratio2.42.74.6-2.1-2.1-0.71.0
Novelty place preference2.32.54.3-2.1-2.1-0.61.0
Time in novel zone, NPP test2.22.34.1-2.0-2.0-0.70.9
Total zone transitions, NPP test1.11.64.70.20.5-1.2-2.2
Total locomotion distance, NPP test2.23.04.9-1.5-1.1-2.0-2.2
Locomotion velocity, NPP test1.62.24.2-1.1-0.8-1.7-2.1
Intraocular pressure5.98.511.33.42.93.12.2
Delta distance traveled before/after self-admin2.52.63.11.71.71.81.3
Delta ambulatory time before/after self-admin0.81.01.50.80.81.21.1
Parametrial fat weight0.30.81.6-1.2-1.30.20.4
Pavlov. Cond. lever latency3.03.86.82.62.61.10.8
Pavlov. Cond. magazine entry latency4.25.411.0-3.1-3.3-0.7-0.6
Pavlov. Cond. change in total contacts5.96.28.7-3.0-2.6-2.4-1.9
Pavlov. Cond. index score3.03.87.6-2.6-2.8-0.7-0.6
Pavlov. Cond. latency score3.24.08.1-2.7-2.8-0.7-0.5
Pavlov. Cond. lever contacts5.16.010.7-3.3-3.3-1.4-1.0
Pavlov. Cond. magazine entry number3.24.18.52.72.90.60.6
Pavlov. Cond. intertrial magazine entries2.22.65.02.02.20.71.0
Pavlov. Cond. lever-magazine prob. diff.3.13.87.2-2.6-2.7-0.8-0.9
Pavlov. Cond. response bias4.25.28.9-3.0-3.0-1.3-1.2
Pavlov. Cond. lever latency2.02.73.91.41.9-1.0-2.0
Pavlov. Cond. magazine entry latency1.72.13.4-1.6-1.90.81.3
Pavlov. Cond. change in total contacts2.94.79.2-2.9-3.0-0.80.3
Pavlov. Cond. index score2.02.75.0-1.9-2.20.51.4
Pavlov. Cond. latency score1.92.54.8-2.0-2.20.31.1
Pavlov. Cond. lever contacts2.63.65.3-1.6-2.21.22.3
Pavlov. Cond. magazine entry number2.02.55.02.02.2-0.3-0.9
Pavlov. Cond. intertrial magazine entries1.01.52.81.71.70.70.1
Pavlov. Cond. lever-magazine prob. diff.2.02.75.1-2.0-2.30.41.3
Pavlov. Cond. response bias2.83.85.7-1.8-2.41.12.2
Time in closed arm before self-admin4.45.68.93.02.32.31.7
Time in closed arm after self-admin0.40.41.00.71.0-0.30.4
Time in open arm before self-admin0.70.81.10.70.80.91.1
Time in open arm after self-admin0.10.10.3-0.00.30.0-0.5
Bone: periosteal estimation0.20.40.80.80.90.40.2
Bone: periosteal perimeter0.00.10.2-0.2-0.0-0.20.4
Bone: post-yield work1.62.33.7-1.2-0.9-1.7-1.9
Progressive ratio test 1 active lever presses0.00.10.1-0.3-0.4-0.00.1
Progressive ratio test 1 breakpoint0.20.20.4-0.6-0.6-0.3-0.1
Progressive ratio test 1 inactive lever presses0.20.20.5-0.4-0.70.30.5
Progressive ratio test 2 active lever presses0.00.00.1-0.2-0.0-0.30.2
Progressive ratio test 2 breakpoint0.00.00.1-0.2-0.0-0.20.3
Progressive ratio test 2 inactive lever presses0.30.40.7-0.8-0.6-0.9-0.1
Incentive Sensitization - Responses0.30.40.90.80.90.20.2
Incentive Sensitization - Breakpoint0.20.30.60.70.80.20.2
Sum of active levers in priming session hrs 5-65.14.88.82.93.00.5-1.3
Progressive ratio0.10.20.30.50.50.5-0.0
Food seeking constrained by brief footshock0.81.01.9-1.3-1.4-0.30.3
Seeking ratio, punishment vs. effort0.50.71.2-1.0-1.1-0.50.5
Retroperitoneal fat weight2.29.518.8-4.2-4.3-0.61.1
Reaction time number correct0.61.11.71.11.3-0.8-1.0
Reaction time mean minus median0.20.40.9-0.9-0.90.1-0.0
Reaction time mean minus median AUC0.51.22.4-1.5-1.50.00.0
Reaction time num false alarms1.31.82.9-1.7-1.5-1.3-0.5
Reaction time num false alarms AUC0.60.91.6-1.3-1.2-0.8-0.2
Reaction time trials correct on left0.61.11.71.11.3-0.8-1.0
Reaction time trials on left0.51.01.61.01.3-0.7-1.0
Reaction time mean0.00.10.2-0.1-0.20.10.4
Reaction time mean AUC0.10.10.2-0.1-0.20.30.5
Median of all reaction times0.10.10.20.30.20.20.5
Reaction time omissions0.91.32.7-1.5-1.70.30.6
Reaction time false alarm rate0.71.02.0-1.4-1.4-0.20.3
Reaction time premature initiation rate0.81.12.6-1.3-1.6-0.4-0.0
Reaction time premature initiations0.20.30.5-0.5-0.7-0.6-0.5
Std. dev. reaction times0.40.70.9-0.8-0.90.71.0
Reaction time trials completed0.51.01.61.01.3-0.7-1.0
Reaction time trials AUC0.61.11.81.11.4-0.7-0.9
Run reversals in cocaine runway, females1.31.33.1-0.4-0.4-1.4-1.8
Run reversals in cocaine runway, males2.02.03.51.91.80.8-0.7
Latency to leave start box in cocaine runway0.50.61.2-1.1-1.0-0.20.4
Latency to leave start box in cocaine runway, F0.00.00.0-0.2-0.00.20.2
Latency to leave start box in cocaine runway, M3.23.05.9-2.4-2.3-1.00.1
Std. dev. time between licks in bursts0.30.30.6-0.6-0.50.40.8
Total sessions with >9 infusions2.12.63.41.71.11.81.7
Short access day 1 total inactive lever presses0.00.10.1-0.2-0.4-0.30.0
Short access day 10 total inactive lever presses4.611.317.4-4.2-3.6-3.3-2.0
Short access day 1 total infusions2.63.56.12.52.21.51.0
Short access day 10 total infusions0.50.71.1-0.7-1.00.41.1
Short access total infusions2.63.24.22.01.71.81.7
Short access day 1 locomotion0.50.60.70.80.60.80.9
Short access day 10 total locomotion0.40.71.1-1.0-1.1-0.5-0.5
Short access total locomotion1.11.33.1-1.3-1.80.20.8
One hour access (0.3 mA shock)1.11.23.4-0.10.5-1.8-1.1
Compulsive drug intake1.92.34.72.02.20.6-0.3
One hour access (shock baseline)1.62.44.1-2.0-2.0-1.20.2
Social response proportion4.04.67.3-2.7-2.6-1.7-1.1
Social responses0.30.30.8-0.6-0.90.20.4
Social time0.70.91.60.80.41.31.0
Soleus weight0.10.30.4-0.6-0.5-0.60.5
Bone: stiffness2.84.66.7-2.6-2.1-2.4-1.3
Tibialis anterior weight0.00.10.50.00.2-0.70.2
Time to tail flick, vehicle, before self-admin0.20.20.30.50.40.30.5
Time to tail flick, vehicle, after self-admin0.60.81.41.20.90.90.5
Time to tail flick, test, before self-admin0.40.51.0-0.9-1.0-0.1-0.0
Time to tail flick, test, after self-admin0.50.61.2-0.3-0.70.61.1
Delta time to tail flick, vehicle, before/after SA0.40.40.7-0.8-0.8-0.5-0.4
Delta time to tail flick, test, before/after SA1.11.11.81.00.71.01.3
Tibia length1.23.26.4-2.5-2.5-0.7-0.1
Ambulatory time before self-admin0.00.00.1-0.0-0.1-0.3-0.2
Ambulatory time after self-admin2.12.55.12.02.21.00.1
Bone: tissue strength0.80.81.0-0.9-0.8-0.9-1.0
Total heroin consumption3.13.66.22.52.40.6-1.4
Bone: trabecular number1.52.43.9-1.5-1.0-2.0-1.7
Bone: trabecular spacing4.76.210.31.91.13.23.1
Bone: trabecular thickness0.60.71.30.81.2-0.6-0.7
Bone: trabecular tissue density3.85.611.8-0.80.0-3.1-3.4
Water consumed over 24 hours0.60.81.41.21.20.40.5
Number of responses in last shaping day4.44.87.42.72.32.21.4