LOC120099785

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120099785 0.02 0.02 1.4e-03 0.02 0.02 0.02 0.02 1.8e-03 9.5e-04 1.9e-03 2.8e-03
2 PL gene expression LOC120099785 0.04 0.03 8.3e-07 0.03 0.05 0.05 0.04 1.3e-04 3.0e-06 7.0e-06 9.9e-06
3 Brain gene expression LOC120099785 0.04 0.03 2.6e-04 0.03 0.04 0.04 0.03 9.8e-04 1.6e-04 3.3e-04 3.9e-04
4 Adipose gene expression LOC120099785 0.03 0.02 2.8e-04 0.01 0 0.01 0.01 1.4e-02 7.2e-02 2.9e-02 3.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.3-0.00.20.5-0.3
Area under the delay curve0.10.10.4-0.1-0.3-0.6-0.1
BMI with tail0.20.61.01.00.80.7-0.3
BMI without tail0.20.30.7-0.3-0.4-0.60.8
Body weight2.811.513.4-3.7-3.6-3.23.2
Weight adjusted by age0.20.20.30.60.50.5-0.2
Bone surface0.30.61.2-1.1-0.8-0.40.6
Bone volume0.30.61.1-1.1-0.8-0.40.7
Breakpoint value in progressive ratio session1.71.94.1-0.7-1.3-2.01.2
Number of licking bursts1.82.13.51.01.51.9-1.3
Context. condit. distance diff. score0.10.10.10.30.30.2-0.2
Locomotion velocity, session 12.42.63.11.81.71.4-1.6
Locomotion distance, session 10.81.11.2-1.1-1.1-1.10.8
Locomotion velocity, session 20.50.60.70.80.80.7-0.8
Locomotion distance, session 20.81.11.81.31.10.8-0.9
Locomotion velocity, session 30.20.30.9-0.30.30.9-0.3
Locomotion distance, session 36.16.77.5-2.7-2.6-2.32.7
Stereotopy head waving bouts, day 30.81.01.61.21.10.9-0.6
Stereotopy head waving duration, day 33.13.74.22.12.01.9-1.7
Locomotion velocity, session 70.10.10.2-0.4-0.10.2-0.1
Locomotion distance, session 70.10.20.4-0.6-0.4-0.10.4
Stereotopy head waving bouts, day 70.10.10.30.50.40.3-0.1
Stereotopy head waving duration, day 71.31.62.41.51.31.1-1.0
Locomotion velocity, session 83.33.94.91.82.02.2-1.9
Locomotion distance, session 80.50.71.31.20.90.5-0.6
Degree of sensitization distance3.23.23.71.71.81.7-1.9
Degree of sensitization stereotypy0.10.10.30.50.20.10.1
Conditioned locomotion0.40.50.8-0.9-0.6-0.00.9
Cocaine response after cond. corrected0.40.50.7-0.9-0.7-0.40.7
Cocaine response after cond. not corrected0.70.71.1-1.0-0.8-0.51.0
Cocaine response before conditioning1.31.62.9-1.0-1.2-1.21.7
Saline control response0.40.61.0-0.1-0.5-1.01.0
Bone: connectivity density0.50.71.00.60.81.0-1.0
Bone: cortical apparent density2.63.44.82.21.91.6-1.7
Bone: cortical area2.13.13.8-1.5-1.7-1.81.9
Bone: cortical porosity1.11.21.41.11.11.2-0.9
Bone: cortical porosity1.21.31.61.21.21.3-0.9
Bone: cortical thickness0.91.52.1-1.0-1.1-1.21.5
Bone: cortical thickness0.10.20.40.30.40.6-0.2
Bone: cortical tissue density3.04.05.32.32.11.7-1.8
Condit. Reinf. active minus inactive responses0.20.20.30.30.50.6-0.3
Condit. Reinf. active-inactive response ratio0.10.20.20.40.50.4-0.2
Condit. Reinf. active responses1.11.31.81.01.21.3-1.0
Condit. Reinf. inactive responses0.80.91.10.80.91.0-1.0
Incentive salience index mean0.00.10.1-0.30.00.4-0.0
Condit. Reinf. lever presses0.20.20.5-0.7-0.5-0.20.3
Condit. Reinf. active minus inactive responses4.35.36.6-2.0-2.3-2.32.6
Condit. Reinf. active-inactive response ratio2.42.54.0-1.1-1.5-1.72.0
Condit. Reinf. active responses5.07.08.2-2.4-2.6-2.72.9
Condit. Reinf. inactive responses1.72.12.5-1.4-1.5-1.61.3
Condit. Reinf. lever presses8.311.312.0-3.5-3.4-3.33.3
Condit. Reinf. lever reinforcers received6.18.59.8-2.8-2.9-2.83.1
Conditioned reinforcement - actives0.50.51.2-0.7-0.5-0.21.1
Conditioned reinforcement - inactives2.32.53.8-1.9-1.7-1.31.3
Conditioned locomotion1.11.32.41.01.21.5-0.5
Patch foraging indifference point 0 sec0.30.40.6-0.7-0.6-0.50.8
Patch foraging indifference point AUC0.80.91.51.20.90.6-0.9
Delay disc. indifference point, 0s delay0.50.51.3-0.2-0.6-1.10.6
Delay disc. indifference point, 16s delay1.71.72.0-1.4-1.3-1.41.0
Delay disc. indifference point, 2s delay0.10.10.2-0.2-0.2-0.5-0.3
Delay disc. indifference point, 24s delay1.51.52.3-1.5-1.4-1.20.5
Delay disc. indifference point, 4s delay0.10.10.2-0.2-0.3-0.40.2
Delay disc. indifference point, 8s delay0.90.91.51.10.90.4-1.2
Indifference point function ln k0.81.12.0-1.4-1.0-0.61.0
Indifference point function log k0.81.12.0-1.4-1.0-0.61.0
Patch foraging total patch changes 0 sec0.40.60.7-0.8-0.8-0.70.8
Patch foraging total patch changes 12 sec0.20.20.3-0.2-0.4-0.60.5
Patch foraging total patch changes 18 sec0.50.61.51.20.70.1-0.6
Patch foraging total patch changes 24 sec0.60.70.9-0.8-0.9-1.00.8
Patch foraging total patch changes 6 sec0.00.00.10.2-0.1-0.30.2
Patch foraging time to switch 0 sec1.21.82.01.41.31.2-1.4
Patch foraging water rate 0 sec0.40.61.30.10.61.1-0.8
Patch foraging water rate 12 sec1.11.63.2-1.8-1.4-0.90.7
Patch foraging water rate 18 sec0.30.40.70.00.50.8-0.8
Patch foraging water rate 24 sec0.50.71.4-1.2-0.9-0.50.7
Patch foraging water rate 6 sec0.30.51.3-1.1-0.7-0.20.3
Seeking ratio, delayed vs. immediate footshock1.21.41.8-1.1-1.3-1.31.1
Distance traveled before self-admin2.02.12.2-1.4-1.5-1.41.5
Distance traveled after self-admin5.86.56.8-2.5-2.6-2.62.5
Extensor digitorum longus weight0.20.70.90.80.90.9-0.8
Bone: elastic displacement0.00.00.10.10.20.2-0.3
Bone: elastic work2.33.03.5-1.9-1.8-1.51.7
Bone: endosteal estimation1.12.53.3-1.3-1.6-1.81.5
Bone: endosteal perimeter1.22.42.9-1.5-1.6-1.71.4
Epididymis fat weight0.00.00.10.20.20.1-0.3
Delta time in closed arm before/after self-admin0.80.81.4-1.2-0.9-0.60.7
Delta time in open arm before/after self-admin0.10.10.10.30.30.3-0.1
Diff in mean of infusions in LGA sessions0.10.10.50.1-0.2-0.70.1
Delay discount exponential model param0.10.10.40.20.30.60.1
Extinction: sum of active levers before priming1.11.12.0-0.6-1.0-1.41.0
Active lever presses in extinction session 60.40.40.8-0.4-0.6-0.90.3
Bone: final force1.72.72.9-1.6-1.7-1.61.7
Bone: final moment2.64.24.6-2.0-2.1-1.92.1
Food consumed during 24 hour testing period0.60.71.4-1.2-0.9-0.60.7
Glucose0.30.40.9-0.10.40.9-0.8
Heart weight0.60.91.1-1.0-0.9-0.81.0
Delay discount hyperbolic model param0.10.10.30.10.20.50.2
Intermittent access intake day 1-15 change1.11.11.6-1.0-1.1-1.30.7
Intermittent access intake escalation0.90.91.2-0.9-1.0-1.10.8
Intermittent access intake escalation 22.62.64.2-1.1-1.6-2.01.5
Intermitt. access day 1 inactive lever presses0.90.92.2-1.5-1.0-0.60.4
Intermitt. access day 15 inactive lever presses0.60.71.8-1.3-0.8-0.30.2
Intermitt. access escalation Index0.30.30.8-0.1-0.2-0.50.9
Intermittent access day 1 total infusions0.30.30.8-0.40.00.60.9
Intermittent access day 15 total infusions1.11.21.9-1.2-1.0-0.71.4
Intermittent access terminal intake (last 3 days)1.51.72.2-1.3-1.3-1.01.5
Intermittent access total infusions0.91.01.9-1.1-0.8-0.41.4
Intermittent access day 1 locomotion0.40.41.3-0.4-0.00.51.1
Intermittent access day 15 total locomotion0.10.10.1-0.20.00.40.2
Intermittent access total locomotion0.30.41.00.30.61.00.0
Intermittent access standard deviation4.85.17.2-2.0-2.3-2.72.0
Left kidney weight2.87.89.5-2.9-2.8-2.43.1
Right kidney weight4.211.812.6-3.5-3.6-3.33.4
Cocaine induced anxiety0.00.00.10.1-0.0-0.3-0.3
Post-drug Anxiety0.40.40.60.70.60.3-0.8
Baseline Anxiety0.20.20.40.40.40.60.1
Tail length5.316.017.9-4.2-4.2-4.03.4
Length with tail8.129.535.1-5.9-5.7-5.34.7
Length without tail4.08.811.2-3.3-3.1-2.72.6
Times rat made contact with spout0.60.71.31.10.90.7-0.7
Lifetime Intake0.30.31.0-0.5-0.20.21.0
Liver weight, left0.10.20.30.60.50.5-0.2
Liver weight, right0.00.00.1-0.2-0.10.1-0.1
Locomotor activity0.71.21.51.21.00.8-1.2
Locomotor testing distance1.11.82.21.51.41.2-1.4
Locomotor testing rearing2.33.56.12.51.91.3-1.6
Locomotion in novel chamber0.40.51.11.00.80.3-0.6
Locomotion in novel chamber post-restriction0.10.10.1-0.3-0.3-0.4-0.1
Fecal boli incidents, locomotor time 12.42.63.61.21.61.9-1.7
Change in fecal boli incidents, locomotor task0.30.30.50.4-0.1-0.70.6
Time >=10cm from walls, locomotor time 10.00.00.00.10.10.2-0.1
Bouts of movement, locomotor time 10.50.51.1-0.5-0.7-1.10.4
Total resting periods, locomotor time 10.40.40.8-0.5-0.6-0.90.4
Rest time, locomotor task time 10.00.00.1-0.00.10.3-0.0
Distance moved, locomotor task time 10.00.00.10.0-0.1-0.20.2
Vertical activity count, locomotor time 10.90.91.2-0.7-0.9-1.11.1
Time >=10cm from walls, locomotor time 20.00.00.00.20.0-0.1-0.0
Bouts of movement, locomotor time 20.10.10.2-0.20.20.3-0.5
Total resting periods, locomotor time 20.10.10.2-0.00.20.4-0.5
Rest time, locomotor task time 20.20.30.4-0.6-0.5-0.30.6
Distance moved, locomotor task time 20.20.20.50.70.50.2-0.2
Vertical activity count, locomotor time 20.10.10.40.1-0.2-0.60.2
Light reinforcement 10.20.40.80.60.60.5-0.9
Light reinforcement 26.18.19.72.42.93.1-2.9
Bone: marrow area1.22.63.5-1.3-1.6-1.91.5
Bone: maximum diameter1.62.93.2-1.8-1.7-1.51.8
Bone: maximum force2.95.05.7-2.0-2.2-2.32.4
Bone: maximum moment3.96.77.7-2.4-2.6-2.62.8
Mean time between licks in bursts0.10.20.3-0.5-0.4-0.30.5
Mean num. licks in bursts0.50.61.4-0.2-0.7-1.20.7
Cd content in liver0.60.61.41.20.80.2-0.7
Co content in liver1.61.92.21.31.51.5-1.1
Cu content in liver1.51.82.7-1.7-1.4-0.91.3
Fe content in liver0.30.30.70.20.40.6-0.8
K content in liver0.70.70.9-1.0-0.8-0.50.9
Mg content in liver0.10.10.2-0.5-0.20.30.3
Mn content in liver0.20.20.8-0.1-0.3-0.20.9
Na content in liver5.25.55.9-2.3-2.4-2.22.4
Rb content in liver0.00.00.0-0.2-0.10.0-0.1
Se content in liver4.35.25.82.42.32.4-2.0
Sr content in liver0.60.60.90.70.80.9-0.4
Zn content in liver0.20.20.50.20.50.7-0.4
Bone: minimum diameter5.29.612.7-2.4-3.0-3.63.3
Time in familiar zone, hab. session 10.20.20.4-0.3-0.5-0.60.5
Time in novel zone, hab. session 10.10.10.20.30.40.4-0.3
Total zone transitions, hab. session 10.40.51.1-0.1-0.6-1.10.8
Total locomotion distance, hab. session 12.73.86.5-1.3-1.9-2.51.9
Locomotion velocity, hab. session 11.11.63.2-0.7-1.2-1.81.2
Time in familiar zone, hab. session 20.60.60.7-0.8-0.8-0.90.5
Time in novel zone, hab. session 20.70.70.90.80.80.8-0.9
Total zone transitions, hab. session 20.10.20.20.50.40.5-0.3
Total locomotion distance, hab. session 20.30.40.6-0.3-0.6-0.80.6
Locomotion velocity, hab. session 20.20.30.4-0.2-0.5-0.60.6
Novel to familiar place preference ratio0.80.81.6-0.5-0.9-1.30.8
Novelty place preference0.70.71.3-0.5-0.9-1.10.7
Time in novel zone, NPP test0.40.40.8-0.3-0.6-0.90.5
Total zone transitions, NPP test0.10.20.30.40.40.4-0.6
Total locomotion distance, NPP test1.62.23.6-1.1-1.5-1.91.3
Locomotion velocity, NPP test2.02.84.4-1.3-1.7-2.11.5
Intraocular pressure0.00.00.1-0.2-0.00.1-0.3
Delta distance traveled before/after self-admin0.70.81.1-0.9-0.9-1.00.6
Delta ambulatory time before/after self-admin1.21.41.7-1.0-1.2-1.31.2
Parametrial fat weight0.61.22.00.91.11.4-0.9
Pavlov. Cond. lever latency0.10.10.30.30.30.1-0.5
Pavlov. Cond. magazine entry latency0.10.10.20.10.30.4-0.2
Pavlov. Cond. change in total contacts0.00.00.0-0.1-0.10.00.2
Pavlov. Cond. index score0.00.00.1-0.10.00.20.3
Pavlov. Cond. latency score0.00.00.1-0.2-0.10.00.4
Pavlov. Cond. lever contacts0.70.91.1-1.0-0.9-0.71.1
Pavlov. Cond. magazine entry number0.00.00.1-0.2-0.2-0.30.0
Pavlov. Cond. intertrial magazine entries0.20.30.50.70.60.4-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.3-0.20.00.5
Pavlov. Cond. response bias0.10.10.2-0.4-0.3-0.20.5
Pavlov. Cond. lever latency3.95.25.42.32.32.3-2.2
Pavlov. Cond. magazine entry latency2.63.04.7-2.2-1.8-1.41.5
Pavlov. Cond. change in total contacts7.19.710.6-3.0-3.2-3.33.0
Pavlov. Cond. index score3.84.85.9-2.4-2.3-2.12.0
Pavlov. Cond. latency score3.64.55.8-2.4-2.2-2.01.9
Pavlov. Cond. lever contacts3.75.05.2-2.3-2.3-2.32.2
Pavlov. Cond. magazine entry number1.82.23.41.81.51.3-1.1
Pavlov. Cond. intertrial magazine entries0.91.21.90.81.11.4-1.0
Pavlov. Cond. lever-magazine prob. diff.4.25.36.4-2.5-2.4-2.22.2
Pavlov. Cond. response bias4.35.86.3-2.5-2.4-2.42.3
Time in closed arm before self-admin0.10.10.10.40.30.2-0.0
Time in closed arm after self-admin0.50.50.9-1.0-0.7-0.40.7
Time in open arm before self-admin1.21.31.6-1.3-1.2-1.10.9
Time in open arm after self-admin0.50.50.7-0.5-0.8-0.80.8
Bone: periosteal estimation2.04.14.9-1.7-2.0-2.22.1
Bone: periosteal perimeter1.83.03.7-1.5-1.8-1.91.7
Bone: post-yield work0.81.11.7-0.8-1.0-1.31.0
Progressive ratio test 1 active lever presses2.52.64.9-1.7-1.4-0.92.2
Progressive ratio test 1 breakpoint2.93.04.7-1.9-1.6-1.12.2
Progressive ratio test 1 inactive lever presses0.80.91.5-1.2-0.9-0.51.0
Progressive ratio test 2 active lever presses1.21.21.9-1.4-1.0-0.61.3
Progressive ratio test 2 breakpoint1.21.42.1-1.5-1.1-0.51.4
Progressive ratio test 2 inactive lever presses3.84.46.0-2.5-2.1-1.82.0
Incentive Sensitization - Responses0.10.10.2-0.5-0.20.0-0.1
Incentive Sensitization - Breakpoint0.10.10.1-0.3-0.00.2-0.4
Sum of active levers in priming session hrs 5-60.30.31.01.00.3-0.5-0.1
Progressive ratio0.50.50.90.90.70.4-0.8
Food seeking constrained by brief footshock3.23.95.0-1.6-1.9-2.22.1
Seeking ratio, punishment vs. effort2.32.83.4-1.8-1.7-1.41.7
Retroperitoneal fat weight1.23.94.71.81.92.2-2.0
Reaction time number correct0.00.00.0-0.0-0.00.10.1
Reaction time mean minus median0.20.30.6-0.8-0.6-0.40.3
Reaction time mean minus median AUC0.40.51.1-1.0-0.8-0.40.6
Reaction time num false alarms0.91.21.61.31.21.2-0.3
Reaction time num false alarms AUC1.21.62.21.51.51.4-0.5
Reaction time trials correct on left0.00.00.0-0.0-0.00.10.1
Reaction time trials on left0.00.00.00.00.00.20.1
Reaction time mean0.00.00.1-0.20.10.4-0.0
Reaction time mean AUC0.10.10.4-0.10.30.7-0.2
Median of all reaction times0.10.10.30.10.40.6-0.1
Reaction time omissions0.10.20.40.40.50.6-0.1
Reaction time false alarm rate0.91.21.61.21.21.2-0.6
Reaction time premature initiation rate0.00.00.1-0.0-0.1-0.2-0.0
Reaction time premature initiations0.00.00.00.0-0.0-0.10.0
Std. dev. reaction times0.20.30.6-0.8-0.5-0.20.4
Reaction time trials completed0.00.00.00.00.00.20.1
Reaction time trials AUC0.00.00.10.10.10.30.1
Run reversals in cocaine runway, females0.20.20.5-0.30.20.7-0.5
Run reversals in cocaine runway, males1.11.11.21.11.11.1-0.9
Latency to leave start box in cocaine runway0.10.20.40.20.20.3-0.7
Latency to leave start box in cocaine runway, F0.70.81.10.90.80.7-1.1
Latency to leave start box in cocaine runway, M0.10.10.3-0.5-0.4-0.20.2
Std. dev. time between licks in bursts0.60.71.1-0.6-0.8-1.00.8
Total sessions with >9 infusions0.30.30.70.40.40.60.8
Short access day 1 total inactive lever presses0.70.81.4-1.2-0.9-0.70.7
Short access day 10 total inactive lever presses0.50.61.1-1.1-0.8-0.60.5
Short access day 1 total infusions0.40.41.0-0.6-0.5-0.21.0
Short access day 10 total infusions0.20.20.30.20.40.60.4
Short access total infusions0.20.30.60.20.40.80.5
Short access day 1 locomotion1.71.82.21.51.51.5-0.9
Short access day 10 total locomotion0.70.82.0-0.7-0.6-0.41.4
Short access total locomotion0.30.40.60.50.60.80.6
One hour access (0.3 mA shock)1.82.12.9-1.4-1.4-1.31.7
Compulsive drug intake0.30.30.7-0.1-0.5-0.80.5
One hour access (shock baseline)0.40.40.7-0.8-0.6-0.30.8
Social response proportion4.54.85.0-2.2-2.2-2.12.2
Social responses0.20.20.5-0.7-0.5-0.20.0
Social time0.50.71.5-0.7-0.9-1.20.2
Soleus weight1.02.84.12.01.71.1-1.7
Bone: stiffness1.42.32.8-1.2-1.4-1.71.7
Tibialis anterior weight0.00.10.40.60.2-0.10.0
Time to tail flick, vehicle, before self-admin0.10.10.2-0.3-0.10.30.5
Time to tail flick, vehicle, after self-admin0.50.51.0-1.0-0.7-0.50.6
Time to tail flick, test, before self-admin0.00.00.00.20.10.20.1
Time to tail flick, test, after self-admin0.10.10.2-0.00.10.20.4
Delta time to tail flick, vehicle, before/after SA0.30.30.3-0.6-0.5-0.60.4
Delta time to tail flick, test, before/after SA0.00.00.1-0.10.10.20.1
Tibia length2.26.37.2-2.7-2.5-2.22.6
Ambulatory time before self-admin1.11.11.3-1.0-1.1-1.11.0
Ambulatory time after self-admin6.47.07.6-2.7-2.7-2.82.4
Bone: tissue strength4.74.64.9-2.0-2.1-2.22.2
Total heroin consumption1.31.53.6-0.3-1.1-1.91.1
Bone: trabecular number0.10.20.3-0.5-0.4-0.20.4
Bone: trabecular spacing1.62.12.8-1.1-1.4-1.71.6
Bone: trabecular thickness0.20.30.80.00.40.9-0.4
Bone: trabecular tissue density2.83.94.12.02.01.9-2.0
Water consumed over 24 hours0.70.81.1-1.0-0.9-0.61.0
Number of responses in last shaping day2.12.22.5-1.5-1.6-1.41.4