Hub : Genes

LOC120098789

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression LOC120098789 0.1 0.05 1.2e-10 0.09 0.1 0.09 0.09 2.9e-10 5.8e-11 1.7e-10 1.3e-10

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1
Bone: apparent density0.40.70.7-0.8
Area under the delay curve0.00.00.00.2
BMI with tail0.72.42.41.5
BMI without tail0.51.01.0-1.0
Body weight0.72.92.9-1.7
Weight adjusted by age0.00.00.00.0
Bone surface1.93.33.3-1.8
Bone volume1.52.52.5-1.6
Breakpoint value in progressive ratio session0.00.00.00.1
Number of licking bursts0.10.20.20.4
Context. condit. distance diff. score1.11.41.4-1.2
Locomotion velocity, session 11.92.12.11.4
Locomotion distance, session 10.60.70.70.9
Locomotion velocity, session 21.71.91.91.4
Locomotion distance, session 20.60.90.90.9
Locomotion velocity, session 31.21.41.41.2
Locomotion distance, session 31.01.11.11.0
Stereotopy head waving bouts, day 30.10.10.1-0.3
Stereotopy head waving duration, day 30.70.80.8-0.9
Locomotion velocity, session 70.90.90.9-1.0
Locomotion distance, session 70.91.11.1-1.0
Stereotopy head waving bouts, day 71.92.12.11.5
Stereotopy head waving duration, day 70.70.90.90.9
Locomotion velocity, session 80.00.00.00.2
Locomotion distance, session 80.10.20.20.4
Degree of sensitization distance3.93.93.9-2.0
Degree of sensitization stereotypy2.22.52.51.6
Conditioned locomotion0.10.10.1-0.3
Cocaine response after cond. corrected0.60.60.6-0.8
Cocaine response after cond. not corrected1.01.11.1-1.1
Cocaine response before conditioning0.00.00.0-0.2
Saline control response4.76.26.2-2.5
Bone: connectivity density0.20.40.4-0.6
Bone: cortical apparent density2.22.92.91.7
Bone: cortical area2.63.93.9-2.0
Bone: cortical porosity0.10.10.1-0.3
Bone: cortical porosity0.10.10.1-0.4
Bone: cortical thickness0.20.30.3-0.6
Bone: cortical thickness0.91.11.11.0
Bone: cortical tissue density2.63.43.41.9
Condit. Reinf. active minus inactive responses0.60.70.70.8
Condit. Reinf. active-inactive response ratio0.10.10.10.3
Condit. Reinf. active responses0.30.40.40.6
Condit. Reinf. inactive responses0.00.00.00.0
Incentive salience index mean0.20.30.30.5
Condit. Reinf. lever presses0.10.10.1-0.3
Condit. Reinf. active minus inactive responses0.30.40.4-0.6
Condit. Reinf. active-inactive response ratio0.00.00.00.1
Condit. Reinf. active responses1.31.81.8-1.4
Condit. Reinf. inactive responses1.72.02.0-1.4
Condit. Reinf. lever presses2.33.13.1-1.8
Condit. Reinf. lever reinforcers received1.62.32.3-1.5
Conditioned reinforcement - actives1.41.41.4-1.2
Conditioned reinforcement - inactives0.00.00.00.1
Conditioned locomotion2.22.62.6-1.6
Patch foraging indifference point 0 sec1.32.22.2-1.5
Patch foraging indifference point AUC1.92.22.21.5
Delay disc. indifference point, 0s delay0.50.50.5-0.7
Delay disc. indifference point, 16s delay0.00.00.0-0.2
Delay disc. indifference point, 2s delay0.10.10.10.3
Delay disc. indifference point, 24s delay0.90.90.9-0.9
Delay disc. indifference point, 4s delay0.90.90.91.0
Delay disc. indifference point, 8s delay0.10.10.10.3
Indifference point function ln k4.15.75.7-2.4
Indifference point function log k4.15.75.7-2.4
Patch foraging total patch changes 0 sec1.32.12.1-1.5
Patch foraging total patch changes 12 sec0.10.10.10.4
Patch foraging total patch changes 18 sec0.30.30.30.6
Patch foraging total patch changes 24 sec0.40.50.5-0.7
Patch foraging total patch changes 6 sec0.00.00.0-0.2
Patch foraging time to switch 0 sec1.11.81.81.3
Patch foraging water rate 0 sec1.62.62.6-1.6
Patch foraging water rate 12 sec1.21.81.8-1.3
Patch foraging water rate 18 sec3.64.84.8-2.2
Patch foraging water rate 24 sec0.60.80.8-0.9
Patch foraging water rate 6 sec4.56.66.6-2.6
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.2
Distance traveled before self-admin0.70.70.7-0.9
Distance traveled after self-admin0.00.00.00.1
Extensor digitorum longus weight1.45.55.5-2.4
Bone: elastic displacement7.58.58.52.9
Bone: elastic work3.03.93.92.0
Bone: endosteal estimation0.81.71.7-1.3
Bone: endosteal perimeter1.63.43.4-1.8
Epididymis fat weight0.00.10.1-0.3
Delta time in closed arm before/after self-admin0.90.90.9-1.0
Delta time in open arm before/after self-admin3.43.33.31.8
Diff in mean of infusions in LGA sessions4.34.84.8-2.2
Delay discount exponential model param0.10.10.1-0.3
Extinction: sum of active levers before priming0.00.00.0-0.1
Active lever presses in extinction session 61.11.11.11.0
Bone: final force1.22.02.0-1.4
Bone: final moment0.50.90.9-0.9
Food consumed during 24 hour testing period0.40.40.4-0.7
Glucose1.21.81.81.3
Heart weight0.50.70.7-0.8
Delay discount hyperbolic model param0.10.10.1-0.3
Intermittent access intake day 1-15 change1.01.01.01.0
Intermittent access intake escalation0.00.00.00.2
Intermittent access intake escalation 20.20.20.20.5
Intermitt. access day 1 inactive lever presses0.00.00.0-0.2
Intermitt. access day 15 inactive lever presses0.10.10.10.4
Intermitt. access escalation Index2.42.22.2-1.5
Intermittent access day 1 total infusions0.40.50.5-0.7
Intermittent access day 15 total infusions0.60.70.7-0.8
Intermittent access terminal intake (last 3 days)0.70.70.7-0.8
Intermittent access total infusions1.92.12.1-1.4
Intermittent access day 1 locomotion0.00.00.0-0.1
Intermittent access day 15 total locomotion0.70.80.80.9
Intermittent access total locomotion0.10.20.20.4
Intermittent access standard deviation0.10.10.1-0.3
Left kidney weight1.43.93.9-2.0
Right kidney weight3.28.98.9-3.0
Cocaine induced anxiety3.44.04.0-2.0
Post-drug Anxiety0.91.01.0-1.0
Baseline Anxiety1.21.31.31.1
Tail length8.926.826.8-5.2
Length with tail4.416.116.1-4.0
Length without tail0.40.80.8-0.9
Times rat made contact with spout0.10.10.10.3
Lifetime Intake3.54.04.0-2.0
Liver weight, left0.00.00.0-0.1
Liver weight, right0.40.70.7-0.8
Locomotor activity0.00.00.0-0.1
Locomotor testing distance0.00.00.0-0.2
Locomotor testing rearing0.00.00.0-0.0
Locomotion in novel chamber0.50.60.6-0.8
Locomotion in novel chamber post-restriction1.51.81.8-1.4
Fecal boli incidents, locomotor time 10.60.60.6-0.8
Change in fecal boli incidents, locomotor task0.20.20.2-0.4
Time >=10cm from walls, locomotor time 10.00.00.00.1
Bouts of movement, locomotor time 11.41.61.61.3
Total resting periods, locomotor time 11.11.21.21.1
Rest time, locomotor task time 10.10.10.10.3
Distance moved, locomotor task time 10.10.10.1-0.3
Vertical activity count, locomotor time 10.00.00.0-0.1
Time >=10cm from walls, locomotor time 20.10.10.1-0.3
Bouts of movement, locomotor time 20.60.60.60.8
Total resting periods, locomotor time 20.50.50.50.7
Rest time, locomotor task time 20.10.10.10.3
Distance moved, locomotor task time 20.20.20.2-0.4
Vertical activity count, locomotor time 20.00.00.0-0.1
Light reinforcement 10.00.00.00.1
Light reinforcement 21.62.22.2-1.5
Bone: marrow area0.81.81.8-1.3
Bone: maximum diameter1.83.23.2-1.8
Bone: maximum force0.91.51.5-1.2
Bone: maximum moment0.30.50.5-0.7
Mean time between licks in bursts0.10.10.1-0.3
Mean num. licks in bursts0.10.10.1-0.3
Cd content in liver0.50.50.50.7
Co content in liver0.10.10.10.4
Cu content in liver0.20.30.3-0.5
Fe content in liver0.40.50.50.7
K content in liver1.81.81.81.3
Mg content in liver0.10.10.1-0.3
Mn content in liver1.82.02.0-1.4
Na content in liver0.00.00.0-0.2
Rb content in liver0.20.20.20.5
Se content in liver0.20.20.2-0.4
Sr content in liver0.50.50.50.7
Zn content in liver0.00.00.0-0.2
Bone: minimum diameter4.27.97.9-2.8
Time in familiar zone, hab. session 11.91.81.8-1.3
Time in novel zone, hab. session 10.80.80.80.9
Total zone transitions, hab. session 13.04.24.22.0
Total locomotion distance, hab. session 10.71.01.01.0
Locomotion velocity, hab. session 10.50.80.80.9
Time in familiar zone, hab. session 20.10.10.10.3
Time in novel zone, hab. session 20.30.30.3-0.6
Total zone transitions, hab. session 20.30.40.40.6
Total locomotion distance, hab. session 20.10.20.2-0.4
Locomotion velocity, hab. session 20.10.20.2-0.4
Novel to familiar place preference ratio2.02.12.1-1.4
Novelty place preference1.41.41.4-1.2
Time in novel zone, NPP test1.11.11.1-1.0
Total zone transitions, NPP test0.40.60.60.8
Total locomotion distance, NPP test0.00.00.0-0.1
Locomotion velocity, NPP test0.00.00.00.1
Intraocular pressure0.40.60.6-0.7
Delta distance traveled before/after self-admin0.91.01.01.0
Delta ambulatory time before/after self-admin0.80.90.90.9
Parametrial fat weight0.10.10.1-0.4
Pavlov. Cond. lever latency0.20.20.2-0.5
Pavlov. Cond. magazine entry latency0.00.00.0-0.2
Pavlov. Cond. change in total contacts0.10.10.1-0.3
Pavlov. Cond. index score0.00.00.00.0
Pavlov. Cond. latency score0.00.00.00.0
Pavlov. Cond. lever contacts0.00.00.00.1
Pavlov. Cond. magazine entry number0.00.00.0-0.2
Pavlov. Cond. intertrial magazine entries0.40.50.5-0.7
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.0
Pavlov. Cond. response bias0.10.10.10.3
Pavlov. Cond. lever latency0.00.00.0-0.1
Pavlov. Cond. magazine entry latency0.00.00.0-0.1
Pavlov. Cond. change in total contacts0.10.10.1-0.3
Pavlov. Cond. index score0.10.10.1-0.3
Pavlov. Cond. latency score0.20.20.2-0.5
Pavlov. Cond. lever contacts0.00.00.0-0.2
Pavlov. Cond. magazine entry number1.01.21.21.1
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.1
Pavlov. Cond. response bias0.00.00.0-0.0
Time in closed arm before self-admin0.10.10.10.3
Time in closed arm after self-admin0.10.10.1-0.3
Time in open arm before self-admin4.14.54.5-2.1
Time in open arm after self-admin0.00.00.00.1
Bone: periosteal estimation2.34.84.8-2.2
Bone: periosteal perimeter4.57.47.4-2.7
Bone: post-yield work1.41.81.8-1.4
Progressive ratio test 1 active lever presses0.00.00.0-0.0
Progressive ratio test 1 breakpoint0.00.00.00.0
Progressive ratio test 1 inactive lever presses0.10.10.10.3
Progressive ratio test 2 active lever presses0.50.50.5-0.7
Progressive ratio test 2 breakpoint0.30.30.3-0.5
Progressive ratio test 2 inactive lever presses0.20.20.2-0.5
Incentive Sensitization - Responses0.10.10.1-0.3
Incentive Sensitization - Breakpoint0.00.00.0-0.1
Sum of active levers in priming session hrs 5-60.50.50.5-0.7
Progressive ratio1.11.31.31.1
Food seeking constrained by brief footshock0.70.90.90.9
Seeking ratio, punishment vs. effort0.00.00.0-0.2
Retroperitoneal fat weight0.30.90.9-0.9
Reaction time number correct3.85.55.5-2.3
Reaction time mean minus median3.34.34.32.1
Reaction time mean minus median AUC4.65.95.92.4
Reaction time num false alarms0.30.50.50.7
Reaction time num false alarms AUC0.50.70.70.8
Reaction time trials correct on left3.85.55.5-2.3
Reaction time trials on left3.65.25.2-2.3
Reaction time mean1.82.62.61.6
Reaction time mean AUC1.92.62.61.6
Median of all reaction times0.70.90.91.0
Reaction time omissions2.63.53.51.9
Reaction time false alarm rate2.02.72.71.7
Reaction time premature initiation rate0.81.11.1-1.1
Reaction time premature initiations3.04.34.3-2.1
Std. dev. reaction times4.66.56.52.5
Reaction time trials completed3.65.25.2-2.3
Reaction time trials AUC3.55.05.0-2.2
Run reversals in cocaine runway, females0.30.30.3-0.5
Run reversals in cocaine runway, males1.31.21.21.1
Latency to leave start box in cocaine runway0.20.20.20.4
Latency to leave start box in cocaine runway, F0.00.00.0-0.2
Latency to leave start box in cocaine runway, M0.20.20.20.4
Std. dev. time between licks in bursts0.50.70.7-0.8
Total sessions with >9 infusions0.60.70.7-0.8
Short access day 1 total inactive lever presses0.20.30.3-0.5
Short access day 10 total inactive lever presses0.60.60.60.8
Short access day 1 total infusions3.33.53.5-1.9
Short access day 10 total infusions1.61.71.7-1.3
Short access total infusions2.93.33.3-1.8
Short access day 1 locomotion0.10.10.10.3
Short access day 10 total locomotion0.00.00.0-0.1
Short access total locomotion0.40.40.40.6
One hour access (0.3 mA shock)1.01.21.2-1.1
Compulsive drug intake0.00.00.0-0.2
One hour access (shock baseline)1.11.21.2-1.1
Social response proportion0.20.20.2-0.4
Social responses0.20.20.20.5
Social time0.20.30.30.5
Soleus weight1.33.93.9-2.0
Bone: stiffness1.82.92.9-1.7
Tibialis anterior weight4.013.613.6-3.7
Time to tail flick, vehicle, before self-admin0.50.50.5-0.7
Time to tail flick, vehicle, after self-admin0.80.80.80.9
Time to tail flick, test, before self-admin0.30.30.30.6
Time to tail flick, test, after self-admin1.61.71.71.3
Delta time to tail flick, vehicle, before/after SA2.22.22.21.5
Delta time to tail flick, test, before/after SA0.00.00.0-0.1
Tibia length0.00.10.1-0.3
Ambulatory time before self-admin0.50.50.5-0.7
Ambulatory time after self-admin0.00.00.00.0
Bone: tissue strength0.10.10.10.3
Total heroin consumption0.50.50.50.7
Bone: trabecular number1.93.03.0-1.7
Bone: trabecular spacing0.70.90.90.9
Bone: trabecular thickness1.01.21.21.1
Bone: trabecular tissue density0.00.00.00.2
Water consumed over 24 hours0.10.10.1-0.3
Number of responses in last shaping day0.10.10.1-0.3