LOC120098586

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression LOC120098586 0.04 0.03 2.4e-03 0.03 0.02 0.01 0.01 3.0e-04 3.0e-03 7.0e-03 7.6e-03
2 BLA gene expression LOC120098586 0.08 0.05 4.1e-04 0.02 0.06 0.04 0.04 1.8e-02 4.0e-04 2.1e-03 2.1e-03
3 RMTg gene expression LOC120098586 0.2 0.16 6.8e-03 -0.01 -0.01 -0.01 -0.01 9.7e-01 9.3e-01 5.8e-01 9.5e-01
4 Brain gene expression LOC120098586 0.07 0.04 4.6e-03 -0 0.02 0.03 -0 9.6e-01 5.6e-03 1.3e-03 3.7e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.83.71.9-1.4-0.8-0.8
Area under the delay curve0.40.41.1-0.3-0.3-1.00.6
BMI with tail0.62.04.1-1.90.3-0.52.0
BMI without tail0.10.10.2-0.40.50.3-0.1
Body weight0.00.20.40.2-0.10.5-0.6
Weight adjusted by age0.30.40.7-0.90.5-0.00.7
Bone surface1.01.84.02.0-0.00.8-1.7
Bone volume1.22.04.32.1-0.10.8-1.8
Breakpoint value in progressive ratio session0.50.51.1-0.2-1.1-0.50.9
Number of licking bursts1.92.24.30.8-2.0-2.10.2
Context. condit. distance diff. score0.50.61.1-1.10.1-0.51.0
Locomotion velocity, session 11.01.12.11.4-0.7-0.1-1.3
Locomotion distance, session 10.81.01.91.0-1.4-1.0-0.2
Locomotion velocity, session 21.21.42.41.1-1.5-1.5-0.2
Locomotion distance, session 20.60.81.70.6-1.3-1.10.2
Locomotion velocity, session 30.10.10.2-0.20.50.3-0.4
Locomotion distance, session 30.60.71.50.9-0.4-0.5-1.2
Stereotopy head waving bouts, day 31.41.63.7-0.91.91.40.1
Stereotopy head waving duration, day 30.40.50.8-0.90.90.30.7
Locomotion velocity, session 70.10.10.3-0.1-0.2-0.60.1
Locomotion distance, session 70.50.61.10.7-1.0-0.8-0.4
Stereotopy head waving bouts, day 70.10.10.40.40.1-0.2-0.6
Stereotopy head waving duration, day 70.10.20.30.6-0.1-0.3-0.5
Locomotion velocity, session 80.30.30.70.7-0.40.2-0.8
Locomotion distance, session 80.71.02.20.1-1.3-1.50.5
Degree of sensitization distance0.10.10.3-0.1-0.40.00.6
Degree of sensitization stereotypy0.10.10.20.10.0-0.3-0.4
Conditioned locomotion0.10.10.20.40.10.4-0.3
Cocaine response after cond. corrected0.10.10.2-0.4-0.2-0.10.4
Cocaine response after cond. not corrected0.30.30.5-0.4-0.6-0.50.7
Cocaine response before conditioning0.30.30.50.6-0.7-0.70.1
Saline control response3.34.38.42.2-2.9-2.0-0.5
Bone: connectivity density1.82.85.92.4-1.7-0.9-1.4
Bone: cortical apparent density0.70.92.2-0.7-0.4-1.50.8
Bone: cortical area0.20.30.90.9-0.40.1-0.5
Bone: cortical porosity0.80.91.5-0.71.11.20.5
Bone: cortical porosity0.91.02.2-0.31.21.5-0.1
Bone: cortical thickness0.30.41.2-0.70.1-0.31.1
Bone: cortical thickness5.26.010.8-0.2-2.9-3.32.2
Bone: cortical tissue density0.60.72.1-0.6-0.4-1.40.6
Condit. Reinf. active minus inactive responses0.10.10.1-0.20.4-0.30.0
Condit. Reinf. active-inactive response ratio0.20.20.3-0.4-0.1-0.60.5
Condit. Reinf. active responses0.00.10.10.20.1-0.4-0.1
Condit. Reinf. inactive responses0.91.12.31.5-0.5-0.1-1.3
Incentive salience index mean0.30.30.80.70.30.1-0.9
Condit. Reinf. lever presses0.91.22.41.30.50.8-1.6
Condit. Reinf. active minus inactive responses0.50.70.90.70.61.0-1.0
Condit. Reinf. active-inactive response ratio0.60.71.5-0.31.01.2-0.4
Condit. Reinf. active responses0.10.20.50.7-0.20.1-0.4
Condit. Reinf. inactive responses0.50.60.90.1-1.0-0.90.7
Condit. Reinf. lever presses0.10.20.5-0.4-0.1-0.40.7
Condit. Reinf. lever reinforcers received0.10.10.20.5-0.10.1-0.2
Conditioned reinforcement - actives0.10.10.2-0.20.50.50.3
Conditioned reinforcement - inactives0.30.30.5-0.40.70.7-0.1
Conditioned locomotion0.00.00.0-0.20.2-0.2-0.1
Patch foraging indifference point 0 sec0.81.32.20.51.01.3-1.5
Patch foraging indifference point AUC0.91.01.71.3-1.3-0.6-0.6
Delay disc. indifference point, 0s delay0.50.51.20.9-0.10.3-1.1
Delay disc. indifference point, 16s delay1.01.01.8-1.0-0.4-1.11.3
Delay disc. indifference point, 2s delay0.60.71.2-1.10.6-0.31.0
Delay disc. indifference point, 24s delay0.20.20.5-0.70.3-0.20.5
Delay disc. indifference point, 4s delay0.10.10.30.4-0.2-0.5-0.2
Delay disc. indifference point, 8s delay0.50.61.6-0.2-0.5-1.30.6
Indifference point function ln k1.11.63.2-1.41.80.90.5
Indifference point function log k1.11.63.2-1.41.80.90.5
Patch foraging total patch changes 0 sec0.71.11.90.11.11.4-1.1
Patch foraging total patch changes 12 sec1.72.33.21.8-1.5-0.8-1.7
Patch foraging total patch changes 18 sec2.73.46.42.5-1.8-0.7-1.9
Patch foraging total patch changes 24 sec1.61.94.01.8-0.70.0-2.0
Patch foraging total patch changes 6 sec0.40.60.91.0-0.9-0.5-0.6
Patch foraging time to switch 0 sec0.20.30.70.4-0.9-0.70.1
Patch foraging water rate 0 sec0.30.51.40.00.81.2-0.2
Patch foraging water rate 12 sec0.20.30.5-0.70.4-0.30.6
Patch foraging water rate 18 sec0.50.61.6-0.11.30.7-0.6
Patch foraging water rate 24 sec0.20.30.8-0.40.90.30.3
Patch foraging water rate 6 sec1.72.55.42.3-1.7-0.8-1.1
Seeking ratio, delayed vs. immediate footshock1.61.83.6-1.4-0.3-1.31.9
Distance traveled before self-admin0.80.91.4-0.81.11.20.4
Distance traveled after self-admin1.01.11.6-0.91.31.20.6
Extensor digitorum longus weight0.00.00.1-0.2-0.00.4-0.2
Bone: elastic displacement0.60.71.5-0.61.20.9-0.2
Bone: elastic work0.70.91.4-1.11.20.80.5
Bone: endosteal estimation0.40.91.61.3-1.2-0.5-0.6
Bone: endosteal perimeter1.02.14.22.0-0.50.6-1.9
Epididymis fat weight0.20.40.90.5-0.60.1-0.9
Delta time in closed arm before/after self-admin0.60.61.2-1.00.5-0.11.1
Delta time in open arm before/after self-admin2.82.74.52.1-2.0-0.8-1.2
Diff in mean of infusions in LGA sessions0.40.50.80.6-0.9-0.80.1
Delay discount exponential model param0.50.51.30.30.31.2-0.6
Extinction: sum of active levers before priming0.90.92.0-1.40.4-0.41.2
Active lever presses in extinction session 60.80.81.5-0.31.11.2-0.5
Bone: final force0.10.20.30.5-0.20.5-0.3
Bone: final moment0.10.10.20.5-0.20.4-0.3
Food consumed during 24 hour testing period5.97.112.33.1-3.5-2.3-1.1
Glucose1.21.94.30.11.42.1-1.0
Heart weight1.62.24.1-1.2-0.6-2.01.7
Delay discount hyperbolic model param0.60.61.80.30.51.3-0.6
Intermittent access intake day 1-15 change1.21.22.21.5-1.2-0.7-0.8
Intermittent access intake escalation1.41.42.71.6-1.1-0.6-1.0
Intermittent access intake escalation 21.41.42.71.6-0.8-0.3-1.4
Intermitt. access day 1 inactive lever presses1.31.41.90.11.31.4-1.3
Intermitt. access day 15 inactive lever presses0.30.30.5-0.60.50.70.4
Intermitt. access escalation Index0.40.30.60.6-0.8-0.2-0.6
Intermittent access day 1 total infusions1.01.11.6-1.31.10.90.9
Intermittent access day 15 total infusions0.10.10.2-0.00.40.5-0.1
Intermittent access terminal intake (last 3 days)0.40.40.9-0.20.81.0-0.1
Intermittent access total infusions0.40.40.8-0.50.80.90.3
Intermittent access day 1 locomotion0.60.60.8-0.90.90.80.6
Intermittent access day 15 total locomotion0.50.50.8-0.90.40.60.9
Intermittent access total locomotion0.91.01.4-1.20.70.91.1
Intermittent access standard deviation0.30.30.80.10.90.6-0.4
Left kidney weight0.71.92.71.4-1.6-1.2-1.2
Right kidney weight0.61.82.91.0-1.7-1.4-1.1
Cocaine induced anxiety0.50.61.0-0.20.91.0-0.6
Post-drug Anxiety0.50.61.4-1.20.60.10.7
Baseline Anxiety0.60.60.9-0.3-0.9-0.90.9
Tail length1.54.610.42.6-0.21.1-3.2
Length with tail0.83.17.01.9-0.11.3-2.6
Length without tail0.00.10.2-0.4-0.00.30.2
Times rat made contact with spout0.60.71.4-0.0-0.8-1.20.9
Lifetime Intake0.50.61.3-0.40.91.10.0
Liver weight, left1.11.83.71.3-1.9-1.3-0.4
Liver weight, right0.91.42.71.4-1.6-0.9-0.7
Locomotor activity0.91.42.9-0.4-1.0-1.21.7
Locomotor testing distance0.91.52.7-0.5-1.1-1.41.6
Locomotor testing rearing2.84.47.91.4-2.8-2.70.3
Locomotion in novel chamber2.32.95.4-0.5-1.7-2.31.7
Locomotion in novel chamber post-restriction0.30.41.00.20.40.6-1.0
Fecal boli incidents, locomotor time 11.61.73.61.50.20.9-1.9
Change in fecal boli incidents, locomotor task0.30.30.90.3-0.4-1.0-0.4
Time >=10cm from walls, locomotor time 10.60.61.2-0.1-0.7-1.10.8
Bouts of movement, locomotor time 10.30.30.7-0.30.50.30.8
Total resting periods, locomotor time 10.60.61.0-0.70.90.41.0
Rest time, locomotor task time 10.80.81.8-0.81.30.70.6
Distance moved, locomotor task time 10.30.40.7-0.1-0.8-0.70.4
Vertical activity count, locomotor time 12.42.54.02.0-2.0-0.7-1.4
Time >=10cm from walls, locomotor time 20.80.81.3-1.10.90.60.9
Bouts of movement, locomotor time 20.80.91.7-1.1-0.1-0.91.3
Total resting periods, locomotor time 20.60.71.3-0.7-0.3-0.91.2
Rest time, locomotor task time 20.30.30.50.6-0.6-0.70.3
Distance moved, locomotor task time 21.11.32.6-1.60.90.71.1
Vertical activity count, locomotor time 20.50.51.10.9-1.0-0.1-0.6
Light reinforcement 18.816.030.85.6-3.9-1.4-4.0
Light reinforcement 26.28.317.44.2-2.20.2-3.3
Bone: marrow area0.40.91.51.2-1.2-0.6-0.5
Bone: maximum diameter0.30.60.90.90.40.8-0.9
Bone: maximum force0.20.30.80.40.30.9-0.4
Bone: maximum moment0.20.30.60.40.30.8-0.5
Mean time between licks in bursts0.40.61.70.1-0.9-1.30.1
Mean num. licks in bursts0.91.02.0-0.81.41.10.5
Cd content in liver0.20.20.50.4-0.4-0.7-0.1
Co content in liver1.11.22.8-1.21.70.80.3
Cu content in liver0.10.10.1-0.3-0.1-0.4-0.1
Fe content in liver1.62.03.7-0.21.91.9-0.6
K content in liver0.20.20.4-0.30.50.6-0.2
Mg content in liver0.80.81.5-0.61.21.1-0.4
Mn content in liver0.10.20.20.40.00.5-0.5
Na content in liver0.00.00.1-0.10.00.30.2
Rb content in liver0.10.10.20.20.40.5-0.4
Se content in liver2.63.25.11.11.32.2-2.3
Sr content in liver0.20.20.2-0.50.50.5-0.3
Zn content in liver0.40.40.9-0.4-0.6-1.00.6
Bone: minimum diameter1.01.84.02.0-1.2-0.2-1.3
Time in familiar zone, hab. session 11.41.32.80.8-1.4-1.70.0
Time in novel zone, hab. session 11.51.52.3-1.51.10.61.4
Total zone transitions, hab. session 10.20.30.70.6-0.9-0.40.1
Total locomotion distance, hab. session 10.10.20.40.3-0.6-0.40.4
Locomotion velocity, hab. session 10.20.30.50.7-0.7-0.2-0.2
Time in familiar zone, hab. session 21.51.52.21.5-1.3-1.0-1.1
Time in novel zone, hab. session 22.22.24.1-2.00.80.12.0
Total zone transitions, hab. session 21.11.42.51.4-1.6-1.2-0.3
Total locomotion distance, hab. session 20.50.61.11.1-1.0-0.5-0.3
Locomotion velocity, hab. session 20.40.61.21.1-0.9-0.2-0.5
Novel to familiar place preference ratio0.91.01.7-0.9-0.5-1.01.3
Novelty place preference1.11.11.9-0.9-0.6-1.11.4
Time in novel zone, NPP test1.31.32.7-1.3-0.2-0.91.7
Total zone transitions, NPP test0.91.32.81.7-1.0-0.1-1.2
Total locomotion distance, NPP test0.20.30.50.7-0.6-0.4-0.2
Locomotion velocity, NPP test0.40.61.21.1-0.7-0.1-0.8
Intraocular pressure1.72.35.4-2.31.30.21.5
Delta distance traveled before/after self-admin0.00.00.0-0.10.20.10.0
Delta ambulatory time before/after self-admin0.10.10.30.5-0.20.1-0.4
Parametrial fat weight0.30.61.60.7-0.10.6-1.3
Pavlov. Cond. lever latency1.51.93.90.2-1.7-2.00.7
Pavlov. Cond. magazine entry latency1.11.52.6-1.21.61.10.7
Pavlov. Cond. change in total contacts1.71.83.30.51.41.8-1.3
Pavlov. Cond. index score1.62.04.0-0.72.01.8-0.2
Pavlov. Cond. latency score1.11.52.9-0.41.61.7-0.3
Pavlov. Cond. lever contacts1.82.24.6-0.41.92.1-0.5
Pavlov. Cond. magazine entry number2.53.16.21.4-2.5-2.0-0.3
Pavlov. Cond. intertrial magazine entries1.21.42.90.90.71.2-1.7
Pavlov. Cond. lever-magazine prob. diff.2.43.05.8-1.12.42.2-0.0
Pavlov. Cond. response bias2.32.85.7-1.22.42.00.2
Pavlov. Cond. lever latency0.10.20.3-0.10.30.5-0.6
Pavlov. Cond. magazine entry latency0.10.10.10.1-0.2-0.30.4
Pavlov. Cond. change in total contacts0.10.10.2-0.10.2-0.20.5
Pavlov. Cond. index score0.10.10.3-0.00.1-0.20.5
Pavlov. Cond. latency score0.10.10.20.00.2-0.10.5
Pavlov. Cond. lever contacts0.40.51.00.2-0.7-1.00.7
Pavlov. Cond. magazine entry number0.10.10.20.0-0.4-0.3-0.3
Pavlov. Cond. intertrial magazine entries1.72.23.61.9-1.5-0.7-1.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.10.1-0.20.6
Pavlov. Cond. response bias0.10.10.3-0.1-0.2-0.40.6
Time in closed arm before self-admin0.10.10.40.20.4-0.0-0.6
Time in closed arm after self-admin0.10.10.3-0.40.50.00.2
Time in open arm before self-admin0.60.71.4-1.20.60.21.0
Time in open arm after self-admin0.20.20.3-0.1-0.6-0.40.4
Bone: periosteal estimation0.71.42.71.7-1.4-0.6-0.8
Bone: periosteal perimeter1.01.63.21.8-0.70.0-1.7
Bone: post-yield work0.30.50.80.9-0.9-0.50.1
Progressive ratio test 1 active lever presses1.71.82.1-1.41.51.41.0
Progressive ratio test 1 breakpoint1.51.51.9-1.31.41.30.9
Progressive ratio test 1 inactive lever presses2.12.35.2-0.41.82.3-0.7
Progressive ratio test 2 active lever presses0.70.71.0-1.00.90.70.8
Progressive ratio test 2 breakpoint0.70.71.2-1.10.70.51.0
Progressive ratio test 2 inactive lever presses1.31.52.6-1.61.30.91.1
Incentive Sensitization - Responses0.00.00.1-0.10.0-0.3-0.0
Incentive Sensitization - Breakpoint0.00.00.1-0.0-0.0-0.3-0.1
Sum of active levers in priming session hrs 5-61.21.22.80.9-1.7-1.0-0.3
Progressive ratio1.31.52.61.1-1.6-1.5-0.2
Food seeking constrained by brief footshock1.72.04.22.0-0.60.5-1.8
Seeking ratio, punishment vs. effort1.21.43.20.41.11.8-1.1
Retroperitoneal fat weight0.20.51.00.7-0.70.2-1.0
Reaction time number correct0.60.91.3-1.11.10.51.0
Reaction time mean minus median0.50.71.1-1.11.10.8-0.1
Reaction time mean minus median AUC1.11.42.3-1.51.51.10.2
Reaction time num false alarms0.81.01.9-1.1-0.2-1.01.4
Reaction time num false alarms AUC0.81.01.7-1.2-0.0-1.01.3
Reaction time trials correct on left0.60.91.3-1.11.10.51.0
Reaction time trials on left0.70.91.3-1.11.10.41.0
Reaction time mean2.02.85.7-2.41.60.71.6
Reaction time mean AUC2.12.85.5-2.41.60.71.6
Median of all reaction times2.33.16.0-2.41.60.61.9
Reaction time omissions0.60.82.2-1.50.70.40.5
Reaction time false alarm rate0.20.30.6-0.5-0.3-0.80.5
Reaction time premature initiation rate3.75.010.83.3-1.9-0.5-2.3
Reaction time premature initiations1.82.55.82.4-1.3-0.4-1.6
Std. dev. reaction times0.71.02.0-1.41.10.60.6
Reaction time trials completed0.70.91.3-1.11.10.41.0
Reaction time trials AUC0.71.01.4-1.21.10.41.1
Run reversals in cocaine runway, females0.70.71.3-1.10.60.60.8
Run reversals in cocaine runway, males0.50.51.4-1.20.4-0.30.6
Latency to leave start box in cocaine runway0.30.30.6-0.2-0.6-0.40.8
Latency to leave start box in cocaine runway, F0.40.50.6-0.80.60.80.5
Latency to leave start box in cocaine runway, M1.91.83.81.5-1.9-1.1-0.2
Std. dev. time between licks in bursts1.61.93.11.4-1.7-1.5-0.5
Total sessions with >9 infusions3.84.27.8-1.52.82.60.1
Short access day 1 total inactive lever presses2.22.45.70.31.32.4-1.5
Short access day 10 total inactive lever presses1.61.74.01.20.41.1-2.0
Short access day 1 total infusions5.96.311.0-1.73.33.3-0.4
Short access day 10 total infusions0.40.51.5-0.20.61.20.1
Short access total infusions1.31.53.7-0.51.41.9-0.3
Short access day 1 locomotion3.23.46.3-1.32.52.4-0.2
Short access day 10 total locomotion0.70.71.6-1.00.50.31.2
Short access total locomotion1.92.03.4-1.31.81.60.5
One hour access (0.3 mA shock)0.10.10.1-0.20.30.20.4
Compulsive drug intake0.40.41.30.70.20.0-1.1
One hour access (shock baseline)0.70.92.1-1.0-0.2-0.61.4
Social response proportion0.10.10.3-0.5-0.2-0.40.2
Social responses2.22.86.60.3-2.0-2.60.6
Social time0.30.30.50.4-0.5-0.7-0.7
Soleus weight0.10.40.90.0-0.9-0.80.3
Bone: stiffness0.20.20.60.5-0.00.8-0.3
Tibialis anterior weight0.00.20.3-0.30.60.4-0.1
Time to tail flick, vehicle, before self-admin0.30.30.50.7-0.3-0.1-0.6
Time to tail flick, vehicle, after self-admin2.02.24.51.3-2.1-1.5-0.4
Time to tail flick, test, before self-admin2.22.13.8-1.31.51.90.8
Time to tail flick, test, after self-admin0.20.20.40.4-0.4-0.6-0.1
Delta time to tail flick, vehicle, before/after SA0.40.40.60.7-0.8-0.2-0.6
Delta time to tail flick, test, before/after SA0.70.62.10.3-0.6-1.50.0
Tibia length0.51.53.20.21.41.8-0.9
Ambulatory time before self-admin1.31.32.0-1.11.21.40.8
Ambulatory time after self-admin0.40.41.1-0.30.61.10.2
Bone: tissue strength1.01.01.9-0.51.41.3-0.3
Total heroin consumption1.01.22.4-0.0-1.3-1.51.0
Bone: trabecular number0.91.43.41.8-0.6-0.1-1.3
Bone: trabecular spacing1.21.63.5-1.90.70.21.5
Bone: trabecular thickness0.20.20.50.7-0.30.0-0.4
Bone: trabecular tissue density1.01.42.9-1.70.60.11.5
Water consumed over 24 hours1.72.03.81.2-1.9-1.70.1
Number of responses in last shaping day2.52.65.4-1.62.31.60.1