LOC120098271

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120098271 0.03 0.02 1.8e-03 0.01 0.02 0.02 0.02 1.2e-02 1.5e-03 2.5e-03 4.8e-03
2 BLA gene expression LOC120098271 0.05 0.03 2.5e-03 0.03 0.02 0 0.03 7.0e-03 2.2e-02 1.8e-01 1.2e-02
3 NAcc gene expression LOC120098271 0.02 0.01 4.1e-03 0 0.02 0.02 0.01 1.1e-01 2.1e-03 5.5e-03 1.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.40.6-0.40.6
Area under the delay curve5.05.36.02.5-2.42.1
BMI with tail6.220.124.1-4.94.5-4.0
BMI without tail4.38.89.7-3.13.0-2.8
Body weight6.627.631.4-5.65.5-4.6
Weight adjusted by age1.61.82.8-1.31.7-1.0
Bone surface0.50.91.30.8-1.10.9
Bone volume0.30.40.70.6-0.80.6
Breakpoint value in progressive ratio session0.00.10.1-0.10.3-0.2
Number of licking bursts0.80.91.20.8-0.91.1
Context. condit. distance diff. score0.00.00.00.10.00.0
Locomotion velocity, session 10.80.91.5-1.10.3-1.2
Locomotion distance, session 10.00.10.1-0.30.1-0.3
Locomotion velocity, session 20.70.81.5-1.20.4-0.8
Locomotion distance, session 20.40.50.80.6-0.90.7
Locomotion velocity, session 30.30.40.6-0.60.4-0.7
Locomotion distance, session 30.10.10.10.40.10.2
Stereotopy head waving bouts, day 32.83.35.01.6-2.21.5
Stereotopy head waving duration, day 30.50.61.60.5-1.30.3
Locomotion velocity, session 70.10.10.2-0.40.4-0.2
Locomotion distance, session 70.30.40.70.8-0.10.8
Stereotopy head waving bouts, day 70.20.30.3-0.60.5-0.5
Stereotopy head waving duration, day 70.10.10.2-0.40.1-0.3
Locomotion velocity, session 80.20.30.4-0.6-0.3-0.6
Locomotion distance, session 80.00.00.10.1-0.3-0.1
Degree of sensitization distance0.10.10.1-0.20.40.2
Degree of sensitization stereotypy0.20.20.2-0.50.5-0.3
Conditioned locomotion0.00.00.0-0.10.10.1
Cocaine response after cond. corrected1.11.31.6-1.01.1-1.3
Cocaine response after cond. not corrected0.20.20.4-0.20.6-0.5
Cocaine response before conditioning4.35.26.62.2-2.02.6
Saline control response0.40.61.10.80.11.0
Bone: connectivity density1.42.22.71.5-1.61.3
Bone: cortical apparent density0.91.21.31.2-1.01.1
Bone: cortical area2.33.54.52.0-1.32.1
Bone: cortical porosity1.01.11.4-1.00.9-1.2
Bone: cortical porosity0.70.81.0-0.80.8-1.0
Bone: cortical thickness2.23.65.12.0-1.32.2
Bone: cortical thickness0.30.30.60.6-0.10.8
Bone: cortical tissue density0.70.91.01.0-0.91.0
Condit. Reinf. active minus inactive responses2.62.94.51.6-2.11.3
Condit. Reinf. active-inactive response ratio1.71.81.91.4-1.41.3
Condit. Reinf. active responses1.51.93.41.3-1.80.8
Condit. Reinf. inactive responses0.50.61.10.7-1.10.3
Incentive salience index mean1.82.13.11.4-1.81.1
Condit. Reinf. lever presses0.81.01.61.2-0.80.9
Condit. Reinf. active minus inactive responses2.02.53.71.9-1.51.3
Condit. Reinf. active-inactive response ratio0.20.20.4-0.00.3-0.6
Condit. Reinf. active responses6.18.510.83.3-2.72.7
Condit. Reinf. inactive responses7.69.310.23.2-2.93.1
Condit. Reinf. lever presses1.31.72.31.5-1.11.2
Condit. Reinf. lever reinforcers received5.67.99.83.1-2.72.6
Conditioned reinforcement - actives0.10.10.2-0.00.3-0.5
Conditioned reinforcement - inactives0.00.00.10.2-0.20.2
Conditioned locomotion0.00.00.00.20.0-0.1
Patch foraging indifference point 0 sec2.03.33.92.0-1.51.9
Patch foraging indifference point AUC3.54.04.82.0-2.21.9
Delay disc. indifference point, 0s delay1.82.02.31.5-1.41.3
Delay disc. indifference point, 16s delay5.95.96.52.5-2.42.4
Delay disc. indifference point, 2s delay0.91.11.31.1-1.10.8
Delay disc. indifference point, 24s delay1.01.01.21.1-1.00.7
Delay disc. indifference point, 4s delay1.01.11.41.2-1.10.8
Delay disc. indifference point, 8s delay6.16.37.42.7-2.52.2
Indifference point function ln k8.712.115.6-3.43.9-3.1
Indifference point function log k8.712.115.6-3.43.9-3.1
Patch foraging total patch changes 0 sec2.03.23.61.9-1.61.8
Patch foraging total patch changes 12 sec9.312.113.13.4-3.63.4
Patch foraging total patch changes 18 sec5.06.47.12.7-2.62.3
Patch foraging total patch changes 24 sec3.34.04.32.0-1.92.1
Patch foraging total patch changes 6 sec3.75.56.42.5-2.22.3
Patch foraging time to switch 0 sec0.10.10.2-0.30.2-0.5
Patch foraging water rate 0 sec0.00.00.0-0.00.10.1
Patch foraging water rate 12 sec0.81.22.3-0.91.5-0.8
Patch foraging water rate 18 sec0.40.50.6-0.50.8-0.8
Patch foraging water rate 24 sec0.40.61.1-0.70.5-1.0
Patch foraging water rate 6 sec0.10.20.2-0.40.5-0.5
Seeking ratio, delayed vs. immediate footshock0.20.20.40.6-0.20.6
Distance traveled before self-admin0.30.30.70.8-0.40.3
Distance traveled after self-admin0.50.51.31.1-0.60.1
Extensor digitorum longus weight1.97.710.0-2.73.2-2.3
Bone: elastic displacement1.21.41.6-1.21.0-1.3
Bone: elastic work2.22.83.2-1.71.8-1.6
Bone: endosteal estimation0.40.91.60.7-1.30.7
Bone: endosteal perimeter0.10.20.30.3-0.50.3
Epididymis fat weight4.610.812.4-3.52.9-3.4
Delta time in closed arm before/after self-admin3.23.13.8-2.01.4-1.9
Delta time in open arm before/after self-admin1.41.32.10.9-1.11.5
Diff in mean of infusions in LGA sessions1.92.12.8-1.11.7-1.5
Delay discount exponential model param5.25.56.2-2.52.4-2.1
Extinction: sum of active levers before priming0.10.10.2-0.10.4-0.4
Active lever presses in extinction session 61.51.52.01.4-0.91.3
Bone: final force1.21.92.01.4-1.31.4
Bone: final moment0.50.90.91.0-0.91.0
Food consumed during 24 hour testing period1.21.51.8-1.21.3-1.1
Glucose7.911.913.4-3.33.7-3.4
Heart weight3.14.36.3-2.12.5-1.5
Delay discount hyperbolic model param4.75.05.6-2.42.3-2.0
Intermittent access intake day 1-15 change0.30.30.7-0.80.5-0.3
Intermittent access intake escalation0.10.10.3-0.50.3-0.1
Intermittent access intake escalation 20.20.20.3-0.50.5-0.1
Intermitt. access day 1 inactive lever presses0.10.10.1-0.40.1-0.2
Intermitt. access day 15 inactive lever presses0.20.20.2-0.50.5-0.4
Intermitt. access escalation Index1.51.31.8-1.31.0-1.1
Intermittent access day 1 total infusions0.00.10.10.2-0.3-0.1
Intermittent access day 15 total infusions0.00.00.0-0.1-0.2-0.2
Intermittent access terminal intake (last 3 days)0.00.00.0-0.0-0.00.0
Intermittent access total infusions0.10.20.3-0.30.2-0.6
Intermittent access day 1 locomotion0.20.20.4-0.30.2-0.6
Intermittent access day 15 total locomotion3.63.94.3-2.12.0-1.9
Intermittent access total locomotion1.82.12.2-1.41.4-1.5
Intermittent access standard deviation0.10.10.1-0.3-0.3-0.2
Left kidney weight0.30.91.3-0.91.1-0.7
Right kidney weight0.30.81.4-0.91.2-0.3
Cocaine induced anxiety0.10.20.4-0.30.1-0.6
Post-drug Anxiety0.20.20.40.4-0.20.6
Baseline Anxiety0.60.61.50.6-0.31.2
Tail length0.10.30.4-0.50.6-0.5
Length with tail0.82.84.2-1.62.0-1.3
Length without tail0.81.82.6-1.41.6-0.9
Times rat made contact with spout0.30.30.7-0.20.8-0.4
Lifetime Intake0.20.30.6-0.30.3-0.8
Liver weight, left0.10.20.3-0.50.4-0.6
Liver weight, right0.81.32.21.0-1.50.9
Locomotor activity0.20.30.60.6-0.30.7
Locomotor testing distance0.10.10.10.30.20.4
Locomotor testing rearing0.50.81.11.0-0.51.1
Locomotion in novel chamber0.20.20.3-0.0-0.6-0.5
Locomotion in novel chamber post-restriction0.10.10.2-0.30.00.4
Fecal boli incidents, locomotor time 10.10.10.2-0.20.1-0.5
Change in fecal boli incidents, locomotor task0.20.20.3-0.3-0.2-0.6
Time >=10cm from walls, locomotor time 10.70.71.0-0.80.7-1.0
Bouts of movement, locomotor time 10.80.91.01.0-0.90.9
Total resting periods, locomotor time 10.60.70.80.9-0.90.7
Rest time, locomotor task time 10.20.20.3-0.50.4-0.4
Distance moved, locomotor task time 10.20.20.40.3-0.10.7
Vertical activity count, locomotor time 10.20.20.4-0.20.60.2
Time >=10cm from walls, locomotor time 25.05.36.7-2.22.6-2.0
Bouts of movement, locomotor time 20.30.40.40.5-0.60.6
Total resting periods, locomotor time 20.10.10.10.2-0.30.3
Rest time, locomotor task time 21.21.31.4-1.11.2-1.2
Distance moved, locomotor task time 20.40.51.10.5-0.21.1
Vertical activity count, locomotor time 20.50.61.10.7-0.31.1
Light reinforcement 11.42.63.11.8-1.61.5
Light reinforcement 24.35.76.72.5-2.62.0
Bone: marrow area0.40.91.70.7-1.30.7
Bone: maximum diameter1.93.43.82.0-1.81.8
Bone: maximum force0.30.50.80.8-0.40.9
Bone: maximum moment0.10.10.20.30.00.4
Mean time between licks in bursts0.20.30.7-0.90.2-0.4
Mean num. licks in bursts1.41.72.4-1.01.5-1.4
Cd content in liver0.00.00.1-0.0-0.2-0.2
Co content in liver0.30.40.6-0.8-0.0-0.8
Cu content in liver3.84.75.82.4-1.92.1
Fe content in liver1.92.22.81.7-1.31.5
K content in liver0.10.10.20.3-0.40.3
Mg content in liver1.01.01.31.0-1.10.8
Mn content in liver0.80.91.1-1.01.0-0.8
Na content in liver0.00.00.10.40.0-0.0
Rb content in liver1.21.51.90.9-1.41.4
Se content in liver0.50.60.90.5-1.00.8
Sr content in liver1.31.21.41.2-1.20.8
Zn content in liver2.73.03.41.8-1.81.5
Bone: minimum diameter0.50.91.31.1-0.41.1
Time in familiar zone, hab. session 10.20.20.4-0.40.6-0.3
Time in novel zone, hab. session 11.41.41.51.2-1.21.1
Total zone transitions, hab. session 12.33.34.2-1.91.5-2.0
Total locomotion distance, hab. session 10.20.30.7-0.2-0.2-0.8
Locomotion velocity, hab. session 10.30.41.0-0.3-0.2-1.0
Time in familiar zone, hab. session 23.63.74.02.0-1.82.0
Time in novel zone, hab. session 22.92.93.6-1.71.4-1.9
Total zone transitions, hab. session 20.20.30.4-0.50.6-0.5
Total locomotion distance, hab. session 20.10.10.20.5-0.40.1
Locomotion velocity, hab. session 20.00.00.10.1-0.2-0.3
Novel to familiar place preference ratio1.01.01.8-0.71.4-0.9
Novelty place preference1.21.32.1-0.91.4-1.0
Time in novel zone, NPP test1.01.11.8-0.81.3-0.9
Total zone transitions, NPP test0.10.10.2-0.40.2-0.5
Total locomotion distance, NPP test0.20.20.50.5-0.7-0.0
Locomotion velocity, NPP test0.20.30.60.6-0.80.1
Intraocular pressure3.95.46.8-2.62.2-2.1
Delta distance traveled before/after self-admin0.80.81.21.1-1.10.1
Delta ambulatory time before/after self-admin0.80.91.61.3-1.10.2
Parametrial fat weight0.71.42.1-1.01.0-1.4
Pavlov. Cond. lever latency0.10.10.20.5-0.30.4
Pavlov. Cond. magazine entry latency0.30.40.80.6-0.20.9
Pavlov. Cond. change in total contacts0.10.10.10.4-0.40.4
Pavlov. Cond. index score0.00.00.0-0.00.00.1
Pavlov. Cond. latency score0.00.00.0-0.20.1-0.2
Pavlov. Cond. lever contacts0.00.00.00.1-0.20.1
Pavlov. Cond. magazine entry number0.20.30.4-0.50.5-0.6
Pavlov. Cond. intertrial magazine entries0.10.10.20.2-0.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.2-0.20.3
Pavlov. Cond. response bias0.10.10.20.3-0.20.4
Pavlov. Cond. lever latency0.71.01.5-1.20.9-0.8
Pavlov. Cond. magazine entry latency0.10.10.30.2-0.5-0.1
Pavlov. Cond. change in total contacts1.62.32.81.7-1.61.2
Pavlov. Cond. index score0.50.71.10.8-1.00.5
Pavlov. Cond. latency score0.50.61.00.8-1.00.5
Pavlov. Cond. lever contacts0.60.81.11.0-0.90.7
Pavlov. Cond. magazine entry number1.11.31.9-1.11.4-0.9
Pavlov. Cond. intertrial magazine entries0.00.00.00.20.10.0
Pavlov. Cond. lever-magazine prob. diff.0.60.71.20.9-1.10.5
Pavlov. Cond. response bias1.52.02.61.6-1.41.2
Time in closed arm before self-admin0.50.60.9-0.81.0-0.5
Time in closed arm after self-admin1.31.31.5-1.21.2-1.1
Time in open arm before self-admin0.10.10.20.0-0.3-0.4
Time in open arm after self-admin0.30.30.60.3-0.40.8
Bone: periosteal estimation1.12.32.61.5-1.41.6
Bone: periosteal perimeter0.50.81.21.0-0.61.1
Bone: post-yield work0.10.10.20.4-0.10.4
Progressive ratio test 1 active lever presses0.40.40.8-0.40.4-0.9
Progressive ratio test 1 breakpoint0.40.40.8-0.40.4-0.9
Progressive ratio test 1 inactive lever presses0.10.10.30.1-0.5-0.3
Progressive ratio test 2 active lever presses0.80.91.7-0.70.7-1.3
Progressive ratio test 2 breakpoint1.01.12.0-0.80.9-1.4
Progressive ratio test 2 inactive lever presses0.50.61.0-0.80.5-1.0
Incentive Sensitization - Responses0.20.20.3-0.40.4-0.6
Incentive Sensitization - Breakpoint0.20.20.4-0.40.4-0.6
Sum of active levers in priming session hrs 5-62.82.74.02.0-1.81.0
Progressive ratio0.00.00.10.3-0.1-0.2
Food seeking constrained by brief footshock0.20.30.40.5-0.50.6
Seeking ratio, punishment vs. effort0.10.10.4-0.0-0.20.6
Retroperitoneal fat weight3.511.612.3-3.53.3-3.3
Reaction time number correct1.21.82.2-1.51.2-1.3
Reaction time mean minus median0.50.60.80.9-0.80.7
Reaction time mean minus median AUC0.10.10.20.5-0.1-0.1
Reaction time num false alarms0.60.81.5-0.70.6-1.2
Reaction time num false alarms AUC1.11.52.6-1.10.9-1.6
Reaction time trials correct on left1.21.82.2-1.51.2-1.3
Reaction time trials on left1.31.82.2-1.51.2-1.3
Reaction time mean0.10.20.3-0.40.3-0.5
Reaction time mean AUC0.00.10.2-0.1-0.0-0.4
Median of all reaction times0.60.81.1-0.80.7-1.0
Reaction time omissions0.10.10.20.3-0.50.2
Reaction time false alarm rate0.20.20.6-0.20.3-0.8
Reaction time premature initiation rate1.41.83.11.2-1.01.8
Reaction time premature initiations0.30.51.00.5-0.51.0
Std. dev. reaction times0.00.00.10.00.1-0.3
Reaction time trials completed1.31.82.2-1.51.2-1.3
Reaction time trials AUC1.21.82.1-1.51.2-1.3
Run reversals in cocaine runway, females0.80.80.80.9-0.90.9
Run reversals in cocaine runway, males0.10.10.20.1-0.40.3
Latency to leave start box in cocaine runway1.71.82.21.5-1.11.4
Latency to leave start box in cocaine runway, F1.11.22.11.0-0.71.5
Latency to leave start box in cocaine runway, M0.10.10.20.5-0.1-0.2
Std. dev. time between licks in bursts0.10.10.20.1-0.40.2
Total sessions with >9 infusions1.31.41.9-1.11.0-1.4
Short access day 1 total inactive lever presses0.10.20.20.5-0.4-0.4
Short access day 10 total inactive lever presses0.10.10.30.3-0.20.6
Short access day 1 total infusions0.40.41.3-0.20.1-1.1
Short access day 10 total infusions0.00.00.00.10.1-0.2
Short access total infusions0.10.10.20.1-0.2-0.4
Short access day 1 locomotion2.12.33.8-1.21.3-2.0
Short access day 10 total locomotion2.02.23.0-1.71.4-1.3
Short access total locomotion1.11.11.3-1.11.0-1.1
One hour access (0.3 mA shock)0.40.50.7-0.50.7-0.8
Compulsive drug intake0.40.40.6-0.50.8-0.7
One hour access (shock baseline)0.00.00.1-0.2-0.1-0.3
Social response proportion0.40.40.6-0.70.5-0.6
Social responses0.70.91.31.1-1.10.5
Social time0.10.20.3-0.30.6-0.2
Soleus weight1.54.45.1-2.32.2-1.8
Bone: stiffness0.71.11.51.0-0.91.2
Tibialis anterior weight1.03.64.5-2.12.1-1.4
Time to tail flick, vehicle, before self-admin3.94.04.72.2-1.72.1
Time to tail flick, vehicle, after self-admin0.30.30.50.5-0.70.5
Time to tail flick, test, before self-admin0.30.30.7-0.20.8-0.4
Time to tail flick, test, after self-admin0.60.71.01.0-0.70.7
Delta time to tail flick, vehicle, before/after SA1.01.01.5-1.20.8-0.9
Delta time to tail flick, test, before/after SA0.20.20.30.4-0.50.4
Tibia length0.71.92.0-1.41.4-1.3
Ambulatory time before self-admin0.10.10.30.6-0.00.3
Ambulatory time after self-admin0.50.51.41.2-0.40.2
Bone: tissue strength0.00.00.0-0.00.2-0.1
Total heroin consumption0.10.10.20.1-0.3-0.4
Bone: trabecular number0.10.10.10.3-0.20.3
Bone: trabecular spacing0.10.10.20.1-0.30.5
Bone: trabecular thickness0.10.10.30.4-0.20.5
Bone: trabecular tissue density0.00.10.1-0.3-0.10.2
Water consumed over 24 hours0.10.10.10.40.30.2
Number of responses in last shaping day0.30.30.70.4-0.90.1