LOC120098270

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120098270 0.37 0.2 2.9e-12 0.14 0.1 0.12 0.12 3.5e-13 7.4e-10 1.6e-11 2.1e-11
2 BLA gene expression LOC120098270 0.07 0.07 4.1e-03 0.04 0.02 0.03 0.04 4.4e-03 3.5e-02 8.9e-03 2.1e-03
3 PL gene expression LOC120098270 0.07 0.07 1.1e-05 0.04 0.04 0.04 0.04 2.0e-05 1.7e-05 1.6e-05 2.7e-05
4 Liver gene expression LOC120098270 0.18 0.14 5.9e-05 0.03 0.03 0.05 0.03 2.9e-04 1.3e-04 4.5e-06 2.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.61.01.8-0.41.1-0.8-1.4
Area under the delay curve0.40.41.2-1.10.3-0.40.4
BMI with tail0.82.44.41.2-2.11.71.0
BMI without tail1.73.45.21.4-2.32.11.4
Body weight1.14.46.02.5-2.32.40.9
Weight adjusted by age0.80.91.41.2-0.81.00.8
Bone surface0.30.51.61.30.30.2-0.6
Bone volume0.40.71.30.80.8-0.3-1.1
Breakpoint value in progressive ratio session2.32.54.5-2.11.5-1.50.9
Number of licking bursts1.82.13.41.4-1.81.70.6
Context. condit. distance diff. score0.10.10.20.40.10.2-0.2
Locomotion velocity, session 10.60.71.2-0.11.1-0.7-1.0
Locomotion distance, session 10.30.40.90.90.7-0.1-0.5
Locomotion velocity, session 20.91.01.81.4-0.91.20.1
Locomotion distance, session 20.91.33.41.8-0.71.10.3
Locomotion velocity, session 30.10.10.10.4-0.30.3-0.3
Locomotion distance, session 30.30.41.20.31.1-0.5-0.1
Stereotopy head waving bouts, day 30.20.20.5-0.1-0.70.4-0.4
Stereotopy head waving duration, day 30.20.20.3-0.5-0.5-0.0-0.5
Locomotion velocity, session 71.31.42.1-1.01.4-1.3-1.0
Locomotion distance, session 70.20.20.5-0.20.4-0.4-0.7
Stereotopy head waving bouts, day 70.20.20.30.6-0.30.4-0.4
Stereotopy head waving duration, day 70.30.30.40.6-0.60.7-0.2
Locomotion velocity, session 80.30.30.80.00.6-0.3-0.9
Locomotion distance, session 80.20.31.01.00.10.4-0.1
Degree of sensitization distance0.20.20.3-0.3-0.50.0-0.4
Degree of sensitization stereotypy0.80.91.71.3-0.81.10.2
Conditioned locomotion0.30.41.20.2-0.20.31.1
Cocaine response after cond. corrected0.20.20.6-0.5-0.80.2-0.2
Cocaine response after cond. not corrected0.60.61.30.7-1.20.8-0.1
Cocaine response before conditioning2.42.97.82.8-1.11.60.3
Saline control response0.71.02.31.5-0.81.00.0
Bone: connectivity density0.10.20.4-0.20.5-0.3-0.6
Bone: cortical apparent density0.10.10.3-0.60.0-0.20.1
Bone: cortical area0.40.71.61.3-0.50.8-0.4
Bone: cortical porosity0.20.20.6-0.50.0-0.20.7
Bone: cortical porosity0.40.41.30.1-0.40.41.1
Bone: cortical thickness0.10.20.4-0.50.1-0.1-0.7
Bone: cortical thickness0.10.10.30.6-0.10.3-0.1
Bone: cortical tissue density0.10.10.4-0.60.1-0.20.1
Condit. Reinf. active minus inactive responses0.60.71.60.5-1.30.90.2
Condit. Reinf. active-inactive response ratio0.70.81.70.3-1.31.00.5
Condit. Reinf. active responses0.40.51.00.6-1.00.70.0
Condit. Reinf. inactive responses0.20.20.40.30.5-0.3-0.6
Incentive salience index mean0.50.61.20.8-1.10.90.1
Condit. Reinf. lever presses0.20.30.60.7-0.60.60.2
Condit. Reinf. active minus inactive responses0.30.41.11.00.5-0.0-0.5
Condit. Reinf. active-inactive response ratio0.30.31.01.00.30.1-0.5
Condit. Reinf. active responses0.30.41.11.10.7-0.1-0.2
Condit. Reinf. inactive responses0.20.20.6-0.00.8-0.40.2
Condit. Reinf. lever presses0.60.81.31.1-0.70.90.6
Condit. Reinf. lever reinforcers received0.40.61.81.30.70.0-0.1
Conditioned reinforcement - actives0.90.92.30.1-1.51.00.5
Conditioned reinforcement - inactives1.31.52.21.2-1.41.5-0.4
Conditioned locomotion0.81.02.00.7-1.41.10.1
Patch foraging indifference point 0 sec0.10.20.4-0.1-0.40.3-0.6
Patch foraging indifference point AUC2.63.04.02.0-1.92.00.6
Delay disc. indifference point, 0s delay0.10.20.3-0.00.3-0.4-0.6
Delay disc. indifference point, 16s delay0.50.51.4-1.20.2-0.20.6
Delay disc. indifference point, 2s delay0.20.20.4-0.50.5-0.60.1
Delay disc. indifference point, 24s delay0.50.50.9-0.3-0.90.60.9
Delay disc. indifference point, 4s delay0.20.20.30.4-0.50.5-0.1
Delay disc. indifference point, 8s delay1.01.02.3-1.50.9-0.80.6
Indifference point function ln k2.02.74.0-1.12.0-1.7-1.6
Indifference point function log k2.02.74.0-1.12.0-1.7-1.6
Patch foraging total patch changes 0 sec0.10.20.4-0.1-0.50.4-0.6
Patch foraging total patch changes 12 sec1.21.52.41.3-1.41.60.3
Patch foraging total patch changes 18 sec1.11.42.11.5-1.31.30.2
Patch foraging total patch changes 24 sec1.62.03.11.8-1.31.60.8
Patch foraging total patch changes 6 sec0.91.42.21.1-1.51.50.1
Patch foraging time to switch 0 sec2.23.38.1-2.91.3-1.80.3
Patch foraging water rate 0 sec1.72.74.82.2-1.61.8-0.5
Patch foraging water rate 12 sec0.20.30.70.70.20.0-0.9
Patch foraging water rate 18 sec0.20.31.10.40.1-0.0-1.0
Patch foraging water rate 24 sec0.30.41.20.20.5-0.3-1.1
Patch foraging water rate 6 sec2.33.38.32.9-1.21.60.8
Seeking ratio, delayed vs. immediate footshock1.82.12.8-1.31.7-1.5-1.3
Distance traveled before self-admin0.10.20.40.40.10.1-0.6
Distance traveled after self-admin0.50.61.30.31.2-0.7-0.7
Extensor digitorum longus weight1.24.56.52.4-2.62.4-0.6
Bone: elastic displacement2.62.94.5-2.11.4-1.7-1.5
Bone: elastic work0.40.51.3-0.30.5-0.5-1.2
Bone: endosteal estimation0.30.72.51.60.30.30.0
Bone: endosteal perimeter0.20.51.81.30.10.3-0.2
Epididymis fat weight0.71.62.7-1.61.1-1.4-0.7
Delta time in closed arm before/after self-admin0.10.10.30.50.10.30.4
Delta time in open arm before/after self-admin0.30.30.50.7-0.60.3-0.3
Diff in mean of infusions in LGA sessions1.82.03.0-1.51.7-1.70.3
Delay discount exponential model param0.30.30.91.0-0.20.2-0.5
Extinction: sum of active levers before priming0.60.61.0-0.71.0-0.9-0.6
Active lever presses in extinction session 62.01.94.20.5-1.21.32.0
Bone: final force0.71.13.11.8-0.50.90.2
Bone: final moment0.81.33.92.0-0.51.0-0.1
Food consumed during 24 hour testing period2.32.85.4-1.52.3-1.9-0.3
Glucose1.52.23.4-1.81.4-1.7-0.9
Heart weight0.60.91.61.0-1.21.0-0.1
Delay discount hyperbolic model param0.10.20.50.7-0.10.1-0.4
Intermittent access intake day 1-15 change0.10.10.20.40.0-0.1-0.3
Intermittent access intake escalation0.00.00.10.10.1-0.2-0.2
Intermittent access intake escalation 20.10.10.10.20.3-0.1-0.3
Intermitt. access day 1 inactive lever presses0.80.81.60.3-1.31.20.6
Intermitt. access day 15 inactive lever presses2.42.63.61.5-1.71.91.3
Intermitt. access escalation Index0.70.72.3-0.6-0.1-0.01.5
Intermittent access day 1 total infusions0.80.91.61.1-1.31.0-0.1
Intermittent access day 15 total infusions0.10.10.40.0-0.60.2-0.2
Intermittent access terminal intake (last 3 days)0.10.10.3-0.1-0.50.1-0.5
Intermittent access total infusions0.50.51.40.4-1.20.7-0.2
Intermittent access day 1 locomotion0.30.30.9-0.3-0.1-0.3-0.9
Intermittent access day 15 total locomotion0.20.20.4-0.30.1-0.5-0.6
Intermittent access total locomotion0.30.30.80.2-0.60.1-0.9
Intermittent access standard deviation1.01.12.50.7-0.80.91.6
Left kidney weight5.916.726.85.2-4.24.51.3
Right kidney weight4.111.517.74.2-3.63.81.0
Cocaine induced anxiety1.61.83.1-1.01.3-1.2-1.8
Post-drug Anxiety0.10.10.30.10.2-0.2-0.5
Baseline Anxiety0.30.30.70.2-0.50.30.8
Tail length0.31.01.61.3-0.71.10.8
Length with tail0.41.43.61.9-0.71.20.1
Length without tail0.20.51.61.3-0.30.5-0.2
Times rat made contact with spout0.50.60.7-0.70.8-0.8-0.7
Lifetime Intake0.40.51.40.3-1.20.7-0.1
Liver weight, left10.216.219.44.2-4.44.43.0
Liver weight, right2.94.87.21.9-2.72.41.6
Locomotor activity1.42.23.11.5-1.61.80.8
Locomotor testing distance0.71.11.51.2-1.21.20.1
Locomotor testing rearing4.67.211.03.3-2.92.90.7
Locomotion in novel chamber2.02.53.0-1.61.6-1.7-1.3
Locomotion in novel chamber post-restriction0.70.81.3-1.00.9-1.1-0.4
Fecal boli incidents, locomotor time 10.40.51.2-0.50.4-0.5-1.1
Change in fecal boli incidents, locomotor task0.50.50.5-0.70.7-0.70.7
Time >=10cm from walls, locomotor time 10.10.10.2-0.5-0.1-0.40.1
Bouts of movement, locomotor time 11.71.94.2-0.82.0-1.21.1
Total resting periods, locomotor time 12.42.65.7-1.42.4-1.60.7
Rest time, locomotor task time 10.50.61.7-0.11.3-0.7-0.2
Distance moved, locomotor task time 10.70.82.00.2-1.41.1-0.1
Vertical activity count, locomotor time 10.30.30.8-0.2-0.90.4-0.3
Time >=10cm from walls, locomotor time 20.00.00.1-0.10.3-0.10.1
Bouts of movement, locomotor time 21.61.72.6-0.91.6-1.21.4
Total resting periods, locomotor time 21.71.83.2-1.11.8-1.40.9
Rest time, locomotor task time 21.31.52.3-0.91.3-1.5-1.1
Distance moved, locomotor task time 21.21.32.61.1-1.11.60.6
Vertical activity count, locomotor time 20.60.70.90.7-0.71.00.9
Light reinforcement 10.51.01.41.2-0.81.10.9
Light reinforcement 21.11.52.20.6-1.51.21.3
Bone: marrow area0.30.72.81.70.20.30.1
Bone: maximum diameter2.13.86.62.6-1.82.11.1
Bone: maximum force0.40.72.41.5-0.30.7-0.1
Bone: maximum moment0.50.92.91.7-0.30.7-0.4
Mean time between licks in bursts0.00.10.1-0.3-0.30.10.1
Mean num. licks in bursts3.13.75.9-1.82.4-2.2-1.0
Cd content in liver0.20.20.50.10.7-0.5-0.2
Co content in liver1.11.32.4-1.01.5-1.3-0.5
Cu content in liver0.40.51.11.0-0.50.70.5
Fe content in liver0.20.20.50.7-0.30.50.1
K content in liver1.31.32.01.4-1.11.20.8
Mg content in liver1.61.62.01.0-1.41.31.3
Mn content in liver0.81.01.90.7-1.41.00.6
Na content in liver0.10.10.2-0.4-0.0-0.10.3
Rb content in liver0.40.61.40.8-0.30.51.2
Se content in liver4.55.68.11.7-2.82.62.2
Sr content in liver0.30.30.7-0.8-0.50.1-0.0
Zn content in liver1.01.12.10.5-1.41.10.9
Bone: minimum diameter0.61.13.92.0-0.00.7-0.4
Time in familiar zone, hab. session 10.40.30.50.70.6-0.3-0.7
Time in novel zone, hab. session 11.11.12.10.4-1.41.20.8
Total zone transitions, hab. session 10.20.31.01.00.30.1-0.2
Total locomotion distance, hab. session 10.50.61.3-0.11.1-0.9-0.7
Locomotion velocity, hab. session 11.01.42.5-0.71.6-1.3-0.8
Time in familiar zone, hab. session 20.30.31.00.20.3-0.3-1.0
Time in novel zone, hab. session 20.70.72.20.1-0.40.51.5
Total zone transitions, hab. session 20.70.93.11.8-0.30.7-0.1
Total locomotion distance, hab. session 20.50.61.3-0.21.2-0.9-0.6
Locomotion velocity, hab. session 20.30.41.0-0.01.0-0.7-0.5
Novel to familiar place preference ratio0.50.50.70.8-0.80.9-0.1
Novelty place preference0.40.40.70.9-0.60.7-0.1
Time in novel zone, NPP test0.40.50.80.9-0.70.8-0.1
Total zone transitions, NPP test0.20.30.90.9-0.30.5-0.0
Total locomotion distance, NPP test0.10.10.20.50.10.1-0.2
Locomotion velocity, NPP test0.10.10.40.60.10.1-0.2
Intraocular pressure0.20.30.5-0.00.7-0.4-0.6
Delta distance traveled before/after self-admin0.30.40.8-0.30.9-0.70.2
Delta ambulatory time before/after self-admin0.40.40.7-0.60.8-0.8-0.1
Parametrial fat weight0.61.13.9-2.0-0.3-0.3-0.6
Pavlov. Cond. lever latency0.60.81.1-0.91.1-1.0-0.5
Pavlov. Cond. magazine entry latency1.21.62.20.8-1.51.31.4
Pavlov. Cond. change in total contacts0.10.10.2-0.3-0.10.00.4
Pavlov. Cond. index score1.31.62.11.0-1.51.31.2
Pavlov. Cond. latency score0.70.81.20.6-1.11.01.0
Pavlov. Cond. lever contacts0.91.01.61.0-1.31.10.6
Pavlov. Cond. magazine entry number0.81.01.4-0.81.2-1.0-1.0
Pavlov. Cond. intertrial magazine entries0.70.92.4-0.40.7-0.7-1.5
Pavlov. Cond. lever-magazine prob. diff.1.51.82.71.1-1.61.51.2
Pavlov. Cond. response bias2.73.34.51.7-2.12.01.4
Pavlov. Cond. lever latency0.10.10.3-0.10.5-0.4-0.2
Pavlov. Cond. magazine entry latency0.10.10.3-0.4-0.40.00.5
Pavlov. Cond. change in total contacts0.20.20.5-0.10.7-0.5-0.2
Pavlov. Cond. index score0.10.10.30.1-0.30.20.6
Pavlov. Cond. latency score0.10.10.1-0.3-0.1-0.10.3
Pavlov. Cond. lever contacts0.30.40.50.7-0.70.70.2
Pavlov. Cond. magazine entry number0.20.30.50.7-0.40.5-0.4
Pavlov. Cond. intertrial magazine entries0.60.71.41.20.30.2-1.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.3-0.40.30.6
Pavlov. Cond. response bias0.20.20.50.7-0.40.50.2
Time in closed arm before self-admin0.20.20.30.4-0.50.5-0.3
Time in closed arm after self-admin0.10.10.2-0.10.10.30.4
Time in open arm before self-admin0.10.10.2-0.00.5-0.10.2
Time in open arm after self-admin0.10.10.30.6-0.10.0-0.0
Bone: periosteal estimation0.51.03.51.9-0.20.7-0.1
Bone: periosteal perimeter0.50.82.91.7-0.00.5-0.3
Bone: post-yield work0.20.30.50.70.50.00.5
Progressive ratio test 1 active lever presses0.30.30.70.8-0.30.3-0.6
Progressive ratio test 1 breakpoint0.20.20.40.6-0.30.3-0.5
Progressive ratio test 1 inactive lever presses1.92.13.61.9-1.51.60.4
Progressive ratio test 2 active lever presses0.30.41.10.3-1.00.6-0.1
Progressive ratio test 2 breakpoint0.30.41.00.3-1.00.6-0.1
Progressive ratio test 2 inactive lever presses0.70.81.51.2-1.00.9-0.1
Incentive Sensitization - Responses0.30.30.70.2-0.80.5-0.2
Incentive Sensitization - Breakpoint0.30.30.80.2-0.90.5-0.1
Sum of active levers in priming session hrs 5-61.41.42.2-1.51.3-1.20.2
Progressive ratio0.40.50.7-0.50.7-0.70.9
Food seeking constrained by brief footshock3.03.74.8-1.62.2-2.2-1.7
Seeking ratio, punishment vs. effort1.01.22.6-0.60.9-0.9-1.6
Retroperitoneal fat weight0.62.07.0-2.60.3-1.0-0.0
Reaction time number correct1.42.02.91.6-1.71.60.2
Reaction time mean minus median0.50.71.4-0.51.2-1.0-0.3
Reaction time mean minus median AUC0.10.20.30.10.6-0.5-0.3
Reaction time num false alarms4.25.67.42.5-2.72.71.3
Reaction time num false alarms AUC3.24.45.82.3-2.42.40.9
Reaction time trials correct on left1.42.02.91.6-1.71.60.2
Reaction time trials on left1.52.13.01.6-1.71.70.2
Reaction time mean1.01.31.8-1.31.2-1.3-0.5
Reaction time mean AUC0.91.32.2-1.51.0-1.2-0.6
Median of all reaction times0.81.01.8-1.41.0-1.2-0.3
Reaction time omissions0.30.40.70.5-0.80.80.4
Reaction time false alarm rate0.60.81.00.9-0.91.00.7
Reaction time premature initiation rate1.82.42.8-1.71.2-1.6-1.7
Reaction time premature initiations0.71.02.4-0.90.3-0.8-1.6
Std. dev. reaction times0.60.81.1-0.71.0-1.0-0.7
Reaction time trials completed1.52.13.01.6-1.71.70.2
Reaction time trials AUC1.92.74.11.7-2.01.90.2
Run reversals in cocaine runway, females0.70.71.5-1.20.5-0.9-0.2
Run reversals in cocaine runway, males0.70.71.31.1-0.70.90.5
Latency to leave start box in cocaine runway0.50.61.1-0.51.0-0.9-0.5
Latency to leave start box in cocaine runway, F0.30.30.7-0.20.5-0.6-0.9
Latency to leave start box in cocaine runway, M0.20.20.50.40.10.20.7
Std. dev. time between licks in bursts0.70.81.01.0-0.81.00.8
Total sessions with >9 infusions1.71.83.71.1-1.91.50.3
Short access day 1 total inactive lever presses1.21.42.31.5-1.41.10.4
Short access day 10 total inactive lever presses0.30.40.8-0.90.7-0.5-0.1
Short access day 1 total infusions0.20.20.60.5-0.70.4-0.1
Short access day 10 total infusions2.02.22.91.6-1.71.60.9
Short access total infusions0.30.30.90.4-1.00.50.1
Short access day 1 locomotion0.40.40.90.3-1.00.7-0.5
Short access day 10 total locomotion0.70.81.0-0.90.7-1.0-0.8
Short access total locomotion0.10.10.4-0.3-0.0-0.2-0.6
One hour access (0.3 mA shock)0.00.10.1-0.20.2-0.3-0.1
Compulsive drug intake0.00.00.1-0.20.2-0.3-0.1
One hour access (shock baseline)0.60.71.00.8-1.00.90.5
Social response proportion1.11.21.81.0-1.21.30.7
Social responses2.43.15.52.3-1.51.91.1
Social time0.70.92.10.71.5-0.50.9
Soleus weight0.20.71.20.6-1.11.00.5
Bone: stiffness1.32.14.72.2-1.11.50.6
Tibialis anterior weight1.96.613.51.9-3.73.10.0
Time to tail flick, vehicle, before self-admin0.70.72.3-0.4-0.70.2-1.5
Time to tail flick, vehicle, after self-admin0.30.30.6-0.60.8-0.50.0
Time to tail flick, test, before self-admin1.91.82.3-0.91.5-1.4-1.5
Time to tail flick, test, after self-admin0.10.10.10.40.10.3-0.1
Delta time to tail flick, vehicle, before/after SA0.30.30.8-0.10.7-0.20.9
Delta time to tail flick, test, before/after SA0.70.61.20.5-1.11.00.0
Tibia length1.95.412.53.5-1.12.11.9
Ambulatory time before self-admin0.10.10.40.20.1-0.1-0.6
Ambulatory time after self-admin0.91.01.9-0.21.4-1.1-0.9
Bone: tissue strength0.00.00.1-0.20.2-0.2-0.1
Total heroin consumption0.10.20.3-0.5-0.20.00.6
Bone: trabecular number0.50.81.4-0.61.2-0.9-0.7
Bone: trabecular spacing0.30.40.80.4-0.90.6-0.1
Bone: trabecular thickness0.10.10.20.4-0.20.3-0.5
Bone: trabecular tissue density0.40.51.1-0.4-1.10.60.8
Water consumed over 24 hours0.40.51.0-0.21.0-0.7-0.6
Number of responses in last shaping day0.50.50.90.1-1.00.50.8