LOC120097433

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression LOC120097433 0.54 0.16 2.9e-09 0.04 0.07 0.07 0.03 3.6e-05 1.5e-08 5.8e-08 1.6e-04
2 Adipose gene expression LOC120097433 0.26 0.12 4.5e-08 0.03 0.06 0.06 0.04 9.8e-05 3.8e-07 1.0e-06 5.7e-05
3 Brain gene expression LOC120097433 0.05 0.04 1.7e-03 0.03 0.03 0.02 0.02 8.7e-04 1.7e-03 3.5e-03 3.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.10.10.2-0.10.4
Area under the delay curve1.51.52.5-1.4-1.60.5
BMI with tail4.013.017.9-3.5-4.23.0
BMI without tail3.36.88.7-2.8-2.91.9
Body weight5.322.124.4-4.8-4.94.4
Weight adjusted by age0.60.61.6-0.5-0.21.3
Bone surface0.40.61.80.3-0.11.3
Bone volume0.30.61.01.00.60.6
Breakpoint value in progressive ratio session0.60.72.0-0.30.21.4
Number of licking bursts0.00.00.1-0.2-0.3-0.1
Context. condit. distance diff. score0.10.10.2-0.4-0.3-0.3
Locomotion velocity, session 10.20.20.3-0.4-0.50.2
Locomotion distance, session 11.51.92.3-1.5-1.51.1
Locomotion velocity, session 22.73.23.9-1.7-1.72.0
Locomotion distance, session 22.43.44.8-2.2-2.01.0
Locomotion velocity, session 31.51.72.9-1.3-1.70.6
Locomotion distance, session 30.10.10.1-0.2-0.30.1
Stereotopy head waving bouts, day 32.93.46.0-2.0-2.50.4
Stereotopy head waving duration, day 32.93.45.4-2.2-2.30.4
Locomotion velocity, session 70.30.30.6-0.7-0.80.1
Locomotion distance, session 71.31.72.5-1.6-1.60.0
Stereotopy head waving bouts, day 70.10.10.20.1-0.10.4
Stereotopy head waving duration, day 71.01.22.5-0.7-0.81.6
Locomotion velocity, session 80.80.91.6-1.3-1.00.3
Locomotion distance, session 80.60.91.4-1.1-1.2-0.1
Degree of sensitization distance1.41.42.5-1.3-1.60.1
Degree of sensitization stereotypy0.50.50.70.70.60.8
Conditioned locomotion1.41.62.2-1.5-1.31.0
Cocaine response after cond. corrected0.50.60.7-0.8-0.8-0.6
Cocaine response after cond. not corrected0.40.50.70.70.5-0.8
Cocaine response before conditioning6.37.712.63.53.2-0.2
Saline control response1.31.73.2-1.1-0.81.8
Bone: connectivity density0.81.32.1-0.7-1.11.4
Bone: cortical apparent density0.20.20.50.00.30.7
Bone: cortical area0.40.70.91.00.70.7
Bone: cortical porosity0.10.10.2-0.4-0.00.1
Bone: cortical porosity0.50.61.1-1.1-0.50.6
Bone: cortical thickness1.11.84.6-0.8-0.42.1
Bone: cortical thickness0.20.20.5-0.20.00.7
Bone: cortical tissue density0.20.30.7-0.10.20.9
Condit. Reinf. active minus inactive responses0.20.20.70.20.10.8
Condit. Reinf. active-inactive response ratio0.10.10.30.10.30.5
Condit. Reinf. active responses0.20.20.50.50.20.7
Condit. Reinf. inactive responses0.40.40.91.00.5-0.4
Incentive salience index mean0.20.30.80.2-0.10.9
Condit. Reinf. lever presses0.10.20.30.40.00.6
Condit. Reinf. active minus inactive responses2.73.35.12.32.0-0.9
Condit. Reinf. active-inactive response ratio1.51.52.61.61.2-0.8
Condit. Reinf. active responses1.21.72.71.61.5-0.3
Condit. Reinf. inactive responses0.40.60.90.91.00.0
Condit. Reinf. lever presses0.81.11.71.31.20.5
Condit. Reinf. lever reinforcers received1.31.92.91.71.7-0.1
Conditioned reinforcement - actives4.64.66.02.42.2-1.7
Conditioned reinforcement - inactives1.82.12.81.71.4-1.1
Conditioned locomotion1.11.41.81.20.9-1.3
Patch foraging indifference point 0 sec0.40.60.8-0.8-0.90.8
Patch foraging indifference point AUC0.60.71.90.30.21.4
Delay disc. indifference point, 0s delay2.62.84.9-1.9-2.20.2
Delay disc. indifference point, 16s delay0.00.00.00.2-0.00.2
Delay disc. indifference point, 2s delay0.10.10.2-0.0-0.4-0.3
Delay disc. indifference point, 24s delay1.21.21.8-1.3-1.30.5
Delay disc. indifference point, 4s delay6.26.59.4-3.0-3.11.1
Delay disc. indifference point, 8s delay2.32.43.6-1.9-1.90.1
Indifference point function ln k1.11.64.7-0.1-0.2-2.2
Indifference point function log k1.11.64.7-0.1-0.2-2.2
Patch foraging total patch changes 0 sec0.50.81.0-0.9-1.00.8
Patch foraging total patch changes 12 sec4.05.28.4-2.0-1.82.9
Patch foraging total patch changes 18 sec0.20.20.6-0.1-0.10.8
Patch foraging total patch changes 24 sec7.28.810.2-2.9-2.83.2
Patch foraging total patch changes 6 sec0.81.21.5-1.0-1.21.1
Patch foraging time to switch 0 sec0.10.10.20.1-0.30.5
Patch foraging water rate 0 sec0.71.21.41.11.2-0.9
Patch foraging water rate 12 sec0.50.72.1-0.00.1-1.5
Patch foraging water rate 18 sec0.40.60.7-0.8-0.7-0.7
Patch foraging water rate 24 sec0.60.81.90.50.6-1.4
Patch foraging water rate 6 sec0.20.30.7-0.4-0.2-0.9
Seeking ratio, delayed vs. immediate footshock0.20.20.4-0.5-0.60.1
Distance traveled before self-admin0.70.81.50.60.71.2
Distance traveled after self-admin0.50.50.80.80.90.3
Extensor digitorum longus weight5.220.426.1-4.3-4.15.1
Bone: elastic displacement0.10.10.3-0.20.1-0.6
Bone: elastic work1.21.52.0-1.4-1.11.1
Bone: endosteal estimation0.81.72.91.40.5-1.7
Bone: endosteal perimeter2.24.66.42.51.6-2.2
Epididymis fat weight0.20.40.6-0.3-0.6-0.8
Delta time in closed arm before/after self-admin13.813.420.6-4.5-3.92.1
Delta time in open arm before/after self-admin1.51.52.11.41.30.7
Diff in mean of infusions in LGA sessions0.80.91.8-0.8-0.41.3
Delay discount exponential model param1.51.52.51.41.6-0.5
Extinction: sum of active levers before priming1.31.33.0-0.7-0.61.7
Active lever presses in extinction session 61.31.31.70.91.31.1
Bone: final force0.50.82.2-0.1-0.31.5
Bone: final moment0.40.72.0-0.0-0.31.4
Food consumed during 24 hour testing period1.51.92.61.61.5-0.8
Glucose1.01.44.10.5-0.2-2.0
Heart weight1.42.03.4-1.5-1.8-0.6
Delay discount hyperbolic model param1.61.72.81.41.7-0.5
Intermittent access intake day 1-15 change4.44.46.32.32.5-1.2
Intermittent access intake escalation3.23.14.81.92.2-0.9
Intermittent access intake escalation 21.91.93.21.51.8-0.3
Intermitt. access day 1 inactive lever presses0.80.81.30.90.7-1.1
Intermitt. access day 15 inactive lever presses0.30.30.80.90.30.1
Intermitt. access escalation Index1.21.01.9-1.1-1.4-0.0
Intermittent access day 1 total infusions0.20.30.50.2-0.6-0.7
Intermittent access day 15 total infusions3.53.95.02.21.8-1.9
Intermittent access terminal intake (last 3 days)1.71.93.31.81.3-0.9
Intermittent access total infusions1.11.22.01.40.8-1.0
Intermittent access day 1 locomotion1.11.12.5-0.9-1.60.2
Intermittent access day 15 total locomotion0.10.10.30.60.2-0.2
Intermittent access total locomotion0.30.30.80.9-0.0-0.2
Intermittent access standard deviation2.52.74.31.52.1-1.2
Left kidney weight0.41.22.3-1.1-1.50.4
Right kidney weight0.20.71.2-0.8-1.10.5
Cocaine induced anxiety0.10.10.20.30.20.4
Post-drug Anxiety0.20.30.40.50.40.6
Baseline Anxiety0.91.01.2-1.0-0.81.1
Tail length1.64.86.8-2.6-1.82.1
Length with tail2.59.010.0-3.1-2.73.2
Length without tail1.22.73.8-1.4-1.61.9
Times rat made contact with spout0.20.20.4-0.6-0.20.5
Lifetime Intake0.30.30.70.60.1-0.8
Liver weight, left0.20.30.70.10.2-0.8
Liver weight, right0.00.10.2-0.2-0.4-0.1
Locomotor activity0.71.21.7-1.3-1.2-0.6
Locomotor testing distance1.01.62.4-1.4-1.6-0.6
Locomotor testing rearing0.40.61.20.50.4-1.1
Locomotion in novel chamber4.25.27.42.72.2-1.9
Locomotion in novel chamber post-restriction0.80.92.30.50.5-1.5
Fecal boli incidents, locomotor time 14.04.46.62.62.4-0.9
Change in fecal boli incidents, locomotor task3.93.75.8-2.3-2.4-0.2
Time >=10cm from walls, locomotor time 14.74.86.62.62.1-1.8
Bouts of movement, locomotor time 10.91.02.20.71.50.3
Total resting periods, locomotor time 11.21.32.81.01.70.3
Rest time, locomotor task time 10.80.91.50.70.8-1.2
Distance moved, locomotor task time 10.10.20.2-0.3-0.40.5
Vertical activity count, locomotor time 10.20.20.50.30.2-0.7
Time >=10cm from walls, locomotor time 23.73.96.12.52.2-0.9
Bouts of movement, locomotor time 20.40.41.0-0.4-0.11.0
Total resting periods, locomotor time 20.20.20.5-0.20.00.7
Rest time, locomotor task time 20.91.03.00.20.3-1.7
Distance moved, locomotor task time 20.40.50.60.70.80.5
Vertical activity count, locomotor time 20.10.10.2-0.4-0.2-0.0
Light reinforcement 11.12.03.21.81.5-0.7
Light reinforcement 23.04.07.02.62.0-0.9
Bone: marrow area0.81.73.11.30.5-1.8
Bone: maximum diameter0.40.71.51.20.80.1
Bone: maximum force0.61.12.8-0.1-0.61.7
Bone: maximum moment0.61.02.5-0.1-0.61.6
Mean time between licks in bursts3.34.67.6-2.8-2.21.1
Mean num. licks in bursts0.00.00.1-0.00.3-0.0
Cd content in liver2.12.33.01.71.5-1.3
Co content in liver1.72.02.51.21.6-1.4
Cu content in liver1.92.33.6-1.9-1.60.8
Fe content in liver0.00.00.0-0.1-0.20.0
K content in liver0.50.50.8-0.5-0.70.9
Mg content in liver0.30.30.6-0.4-0.80.5
Mn content in liver1.01.11.8-1.0-0.81.3
Na content in liver0.40.40.50.70.60.5
Rb content in liver0.50.61.70.20.1-1.3
Se content in liver0.10.10.2-0.2-0.10.5
Sr content in liver4.84.46.6-1.9-1.72.6
Zn content in liver2.02.24.7-0.9-1.02.2
Bone: minimum diameter1.01.83.01.70.9-1.3
Time in familiar zone, hab. session 10.40.40.60.80.8-0.1
Time in novel zone, hab. session 10.60.61.30.50.5-1.1
Total zone transitions, hab. session 10.60.91.3-1.1-0.90.8
Total locomotion distance, hab. session 10.10.10.3-0.3-0.5-0.1
Locomotion velocity, hab. session 10.50.71.0-0.9-1.00.6
Time in familiar zone, hab. session 21.81.92.51.51.6-1.0
Time in novel zone, hab. session 21.81.82.5-1.4-1.61.1
Total zone transitions, hab. session 21.01.31.6-1.0-1.11.3
Total locomotion distance, hab. session 20.20.30.5-0.6-0.70.3
Locomotion velocity, hab. session 20.10.20.4-0.4-0.60.2
Novel to familiar place preference ratio4.14.34.9-2.2-2.21.8
Novelty place preference3.23.33.9-2.0-2.01.4
Time in novel zone, NPP test3.63.74.5-2.1-2.11.5
Total zone transitions, NPP test1.42.12.4-1.5-1.31.5
Total locomotion distance, NPP test0.81.11.5-1.2-1.20.6
Locomotion velocity, NPP test0.50.71.0-1.0-1.00.5
Intraocular pressure0.20.30.60.50.8-0.4
Delta distance traveled before/after self-admin0.20.20.7-0.1-0.1-0.8
Delta ambulatory time before/after self-admin0.30.40.7-0.5-0.4-0.9
Parametrial fat weight1.22.44.01.50.9-2.0
Pavlov. Cond. lever latency0.20.30.9-0.00.2-0.9
Pavlov. Cond. magazine entry latency0.60.71.11.00.80.7
Pavlov. Cond. change in total contacts1.41.52.51.61.40.1
Pavlov. Cond. index score0.70.91.41.21.00.4
Pavlov. Cond. latency score0.50.61.11.00.80.4
Pavlov. Cond. lever contacts0.20.20.40.60.40.2
Pavlov. Cond. magazine entry number1.41.72.5-1.5-1.6-0.5
Pavlov. Cond. intertrial magazine entries0.10.20.30.50.50.1
Pavlov. Cond. lever-magazine prob. diff.0.50.70.91.00.80.6
Pavlov. Cond. response bias0.81.01.61.31.10.5
Pavlov. Cond. lever latency0.50.61.1-1.1-0.8-0.3
Pavlov. Cond. magazine entry latency1.51.73.40.90.91.8
Pavlov. Cond. change in total contacts3.44.77.42.72.60.5
Pavlov. Cond. index score1.92.43.21.81.61.1
Pavlov. Cond. latency score1.72.12.91.71.51.1
Pavlov. Cond. lever contacts1.41.92.91.71.70.1
Pavlov. Cond. magazine entry number1.92.36.1-0.5-0.6-2.5
Pavlov. Cond. intertrial magazine entries0.60.81.70.80.5-1.3
Pavlov. Cond. lever-magazine prob. diff.2.12.73.61.91.71.2
Pavlov. Cond. response bias1.11.51.91.41.40.9
Time in closed arm before self-admin1.82.03.51.91.5-0.5
Time in closed arm after self-admin0.70.71.1-1.1-1.0-0.3
Time in open arm before self-admin3.03.35.7-2.4-2.0-0.3
Time in open arm after self-admin0.00.00.1-0.10.3-0.0
Bone: periosteal estimation0.51.02.11.50.8-0.5
Bone: periosteal perimeter0.91.53.01.71.2-0.4
Bone: post-yield work1.31.83.81.91.0-0.8
Progressive ratio test 1 active lever presses1.11.21.41.01.0-1.2
Progressive ratio test 1 breakpoint1.41.51.61.11.2-1.3
Progressive ratio test 1 inactive lever presses1.11.21.8-1.3-1.30.6
Progressive ratio test 2 active lever presses1.92.12.91.71.3-1.3
Progressive ratio test 2 breakpoint3.03.44.52.11.7-1.7
Progressive ratio test 2 inactive lever presses0.70.81.51.20.7-0.8
Incentive Sensitization - Responses0.40.41.01.00.4-0.0
Incentive Sensitization - Breakpoint0.40.41.11.10.4-0.1
Sum of active levers in priming session hrs 5-62.72.64.21.82.10.5
Progressive ratio0.40.40.70.80.7-0.2
Food seeking constrained by brief footshock0.10.10.2-0.4-0.5-0.2
Seeking ratio, punishment vs. effort1.51.82.6-1.6-1.60.2
Retroperitoneal fat weight0.72.36.4-0.1-0.7-2.5
Reaction time number correct0.20.30.7-0.5-0.20.8
Reaction time mean minus median0.70.91.41.11.20.3
Reaction time mean minus median AUC0.70.91.61.01.30.0
Reaction time num false alarms0.91.22.3-1.5-1.1-0.0
Reaction time num false alarms AUC2.33.25.7-2.4-1.90.6
Reaction time trials correct on left0.20.30.7-0.5-0.20.8
Reaction time trials on left0.20.30.7-0.5-0.20.9
Reaction time mean2.23.14.92.02.2-0.5
Reaction time mean AUC3.44.67.02.52.6-0.8
Median of all reaction times1.52.03.31.71.8-0.2
Reaction time omissions0.00.10.1-0.20.40.2
Reaction time false alarm rate1.21.62.7-1.7-1.4-0.0
Reaction time premature initiation rate3.95.25.6-2.3-2.22.4
Reaction time premature initiations4.36.17.9-2.5-2.12.8
Std. dev. reaction times1.52.13.51.61.9-0.5
Reaction time trials completed0.20.30.7-0.5-0.20.9
Reaction time trials AUC0.20.30.6-0.5-0.20.8
Run reversals in cocaine runway, females4.03.85.9-2.1-2.41.1
Run reversals in cocaine runway, males0.30.30.70.30.2-0.8
Latency to leave start box in cocaine runway0.20.20.40.4-0.1-0.6
Latency to leave start box in cocaine runway, F0.00.00.00.2-0.20.1
Latency to leave start box in cocaine runway, M1.81.83.31.01.0-1.8
Std. dev. time between licks in bursts0.40.50.8-0.9-0.8-0.3
Total sessions with >9 infusions0.30.40.9-0.1-0.4-1.0
Short access day 1 total inactive lever presses0.20.20.5-0.1-0.4-0.7
Short access day 10 total inactive lever presses0.50.61.5-0.4-0.3-1.2
Short access day 1 total infusions0.30.30.7-0.3-0.5-0.8
Short access day 10 total infusions0.30.40.9-0.3-1.0-0.2
Short access total infusions0.50.61.1-0.8-1.0-0.3
Short access day 1 locomotion1.21.32.0-1.3-1.40.5
Short access day 10 total locomotion0.30.41.0-0.4-1.00.1
Short access total locomotion1.51.62.5-1.3-1.60.8
One hour access (0.3 mA shock)2.93.44.31.91.5-2.1
Compulsive drug intake3.43.45.7-2.4-1.71.2
One hour access (shock baseline)8.09.312.23.52.9-2.6
Social response proportion0.00.00.00.1-0.10.2
Social responses0.00.00.10.10.30.1
Social time0.20.30.7-0.8-0.40.3
Soleus weight2.67.68.92.82.4-3.0
Bone: stiffness0.40.71.21.10.80.5
Tibialis anterior weight7.926.837.8-4.8-4.46.2
Time to tail flick, vehicle, before self-admin0.60.61.1-0.6-1.10.7
Time to tail flick, vehicle, after self-admin2.22.33.2-1.8-1.61.0
Time to tail flick, test, before self-admin4.14.06.8-2.2-2.60.6
Time to tail flick, test, after self-admin0.10.10.10.30.3-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.5-0.7-0.30.3
Delta time to tail flick, test, before/after SA2.52.24.31.52.1-0.3
Tibia length0.41.13.30.40.11.8
Ambulatory time before self-admin1.91.92.61.61.60.9
Ambulatory time after self-admin1.31.42.61.61.30.0
Bone: tissue strength0.90.91.01.00.9-0.9
Total heroin consumption1.92.24.4-1.3-0.72.1
Bone: trabecular number0.20.40.6-0.3-0.60.8
Bone: trabecular spacing0.40.50.90.70.9-0.6
Bone: trabecular thickness1.21.42.11.41.2-0.9
Bone: trabecular tissue density2.73.85.71.71.7-2.4
Water consumed over 24 hours0.20.20.4-0.4-0.10.6
Number of responses in last shaping day1.21.32.3-1.5-1.10.6