LOC120097409

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability LOC120097409 0.03 0.02 9.0e-04 0.04 0.04 0.03 0.04 1.3e-04 2.6e-04 5.2e-04 1.9e-04
2 Adipose gene expression LOC120097409 0.13 0.06 9.7e-14 0.1 0.08 0.07 0.09 9.6e-11 1.9e-09 3.8e-08 1.1e-09
3 Liver gene expression LOC120097409 0.13 0.07 4.4e-09 0.06 0.05 0.06 0.06 3.8e-07 1.9e-06 6.3e-07 8.8e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.4-0.6-0.60.5
Area under the delay curve0.20.20.5-0.3-0.3-0.7
BMI with tail1.75.59.8-2.6-3.10.2
BMI without tail1.73.56.1-2.0-2.5-0.8
Body weight2.610.918.1-3.8-4.30.2
Weight adjusted by age1.41.62.3-1.2-1.51.0
Bone surface2.44.15.0-1.9-2.02.2
Bone volume1.11.94.7-0.8-0.82.2
Breakpoint value in progressive ratio session1.82.02.4-1.5-1.51.2
Number of licking bursts0.20.20.3-0.4-0.40.5
Context. condit. distance diff. score0.91.11.31.11.2-0.9
Locomotion velocity, session 10.50.51.1-0.5-0.4-1.0
Locomotion distance, session 10.50.60.8-0.9-0.7-0.7
Locomotion velocity, session 21.92.23.6-1.9-1.7-0.0
Locomotion distance, session 20.71.01.1-1.0-1.1-0.8
Locomotion velocity, session 30.30.30.50.40.5-0.7
Locomotion distance, session 30.10.10.10.20.1-0.3
Stereotopy head waving bouts, day 30.50.61.00.60.6-1.0
Stereotopy head waving duration, day 30.50.60.90.90.9-0.4
Locomotion velocity, session 70.60.61.00.91.0-0.2
Locomotion distance, session 70.40.51.40.00.0-1.2
Stereotopy head waving bouts, day 70.70.81.20.60.81.1
Stereotopy head waving duration, day 70.70.81.5-0.8-0.61.2
Locomotion velocity, session 81.41.72.3-1.5-1.3-1.0
Locomotion distance, session 80.10.20.20.40.4-0.4
Degree of sensitization distance0.10.10.40.00.1-0.6
Degree of sensitization stereotypy0.70.82.3-0.20.01.5
Conditioned locomotion1.21.42.4-1.3-1.5-0.1
Cocaine response after cond. corrected1.01.12.20.90.6-1.5
Cocaine response after cond. not corrected0.80.81.70.80.4-1.3
Cocaine response before conditioning0.50.51.0-0.6-0.51.0
Saline control response3.44.56.7-2.5-2.6-0.5
Bone: connectivity density1.32.02.8-1.7-1.70.7
Bone: cortical apparent density0.20.20.3-0.5-0.6-0.2
Bone: cortical area0.40.61.2-0.5-0.61.1
Bone: cortical porosity0.00.00.0-0.2-0.10.1
Bone: cortical porosity0.30.30.6-0.8-0.70.0
Bone: cortical thickness2.03.35.2-2.1-2.3-0.3
Bone: cortical thickness1.31.51.8-1.2-1.2-1.3
Bone: cortical tissue density0.20.30.5-0.6-0.7-0.3
Condit. Reinf. active minus inactive responses0.10.10.2-0.4-0.4-0.2
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.2-0.1
Condit. Reinf. active responses0.00.00.00.10.10.2
Condit. Reinf. inactive responses0.30.30.50.50.70.5
Incentive salience index mean0.20.20.4-0.5-0.6-0.2
Condit. Reinf. lever presses0.10.20.2-0.3-0.50.4
Condit. Reinf. active minus inactive responses0.70.91.20.90.91.1
Condit. Reinf. active-inactive response ratio2.52.62.71.61.61.6
Condit. Reinf. active responses0.10.20.50.20.10.7
Condit. Reinf. inactive responses0.80.91.4-0.9-1.2-0.8
Condit. Reinf. lever presses1.21.63.1-0.9-1.01.8
Condit. Reinf. lever reinforcers received0.20.30.9-0.0-0.21.0
Conditioned reinforcement - actives1.61.63.00.81.11.7
Conditioned reinforcement - inactives6.16.910.03.22.81.6
Conditioned locomotion6.98.312.33.53.50.7
Patch foraging indifference point 0 sec0.10.10.20.10.50.1
Patch foraging indifference point AUC2.12.42.7-1.6-1.61.4
Delay disc. indifference point, 0s delay0.60.61.9-0.2-0.1-1.4
Delay disc. indifference point, 16s delay1.01.01.61.31.10.4
Delay disc. indifference point, 2s delay0.00.00.00.00.0-0.1
Delay disc. indifference point, 24s delay0.50.41.1-0.2-0.3-1.1
Delay disc. indifference point, 4s delay0.90.92.2-0.5-0.6-1.5
Delay disc. indifference point, 8s delay0.70.71.6-0.5-0.5-1.3
Indifference point function ln k4.96.87.12.72.6-2.5
Indifference point function log k4.96.87.12.72.6-2.5
Patch foraging total patch changes 0 sec0.00.10.1-0.10.3-0.4
Patch foraging total patch changes 12 sec2.73.55.5-2.4-2.10.8
Patch foraging total patch changes 18 sec0.40.50.8-0.6-0.70.9
Patch foraging total patch changes 24 sec1.72.13.1-1.7-1.80.5
Patch foraging total patch changes 6 sec0.60.91.5-1.2-1.0-0.3
Patch foraging time to switch 0 sec0.91.41.5-1.2-1.11.2
Patch foraging water rate 0 sec2.23.65.52.32.2-0.8
Patch foraging water rate 12 sec4.06.17.12.72.3-2.4
Patch foraging water rate 18 sec1.82.43.71.41.2-1.9
Patch foraging water rate 24 sec1.92.63.71.91.4-1.4
Patch foraging water rate 6 sec2.43.55.21.81.5-2.3
Seeking ratio, delayed vs. immediate footshock0.10.10.10.20.3-0.4
Distance traveled before self-admin0.60.71.8-0.4-0.21.3
Distance traveled after self-admin0.30.30.8-0.1-0.20.9
Extensor digitorum longus weight4.819.028.8-5.4-5.30.5
Bone: elastic displacement1.11.23.00.60.6-1.7
Bone: elastic work1.62.12.5-1.3-1.5-1.6
Bone: endosteal estimation0.71.62.21.51.50.6
Bone: endosteal perimeter1.83.74.22.12.01.7
Epididymis fat weight1.84.27.02.62.40.3
Delta time in closed arm before/after self-admin2.32.25.5-0.9-0.5-2.3
Delta time in open arm before/after self-admin1.31.23.50.40.01.9
Diff in mean of infusions in LGA sessions0.30.30.5-0.5-0.70.4
Delay discount exponential model param0.20.20.50.30.40.7
Extinction: sum of active levers before priming3.03.04.2-2.0-2.10.9
Active lever presses in extinction session 61.81.82.7-1.2-1.11.6
Bone: final force1.62.63.7-1.8-1.90.9
Bone: final moment1.42.23.2-1.7-1.80.9
Food consumed during 24 hour testing period0.30.30.90.20.11.0
Glucose1.52.33.51.91.9-0.0
Heart weight2.12.94.22.01.8-1.2
Delay discount hyperbolic model param0.30.30.50.40.40.7
Intermittent access intake day 1-15 change1.51.51.81.21.11.3
Intermittent access intake escalation1.31.31.41.11.11.2
Intermittent access intake escalation 21.01.01.90.80.71.4
Intermitt. access day 1 inactive lever presses2.02.23.31.81.80.4
Intermitt. access day 15 inactive lever presses3.74.15.22.22.31.5
Intermitt. access escalation Index2.11.92.31.31.2-1.5
Intermittent access day 1 total infusions4.24.87.32.72.60.4
Intermittent access day 15 total infusions7.98.912.83.63.41.4
Intermittent access terminal intake (last 3 days)6.36.99.43.12.81.8
Intermittent access total infusions5.05.67.62.82.71.3
Intermittent access day 1 locomotion2.42.63.81.91.9-0.7
Intermittent access day 15 total locomotion4.85.17.92.82.41.3
Intermittent access total locomotion6.06.810.03.22.91.4
Intermittent access standard deviation1.71.82.31.41.51.0
Left kidney weight0.51.42.01.41.40.7
Right kidney weight0.61.73.01.11.01.7
Cocaine induced anxiety0.30.41.00.1-0.11.0
Post-drug Anxiety1.11.32.4-0.9-0.81.5
Baseline Anxiety1.61.72.8-1.7-1.5-0.3
Tail length1.02.94.1-2.0-2.0-0.8
Length with tail1.45.38.0-2.8-2.8-0.0
Length without tail0.92.03.1-1.7-1.70.5
Times rat made contact with spout0.70.81.2-1.0-1.1-0.6
Lifetime Intake3.64.16.02.52.40.7
Liver weight, left0.00.00.10.20.2-0.1
Liver weight, right0.30.51.3-0.2-0.4-1.2
Locomotor activity1.21.93.71.01.0-1.9
Locomotor testing distance1.93.27.31.11.0-2.7
Locomotor testing rearing1.42.24.21.11.1-2.0
Locomotion in novel chamber5.56.79.83.12.91.4
Locomotion in novel chamber post-restriction2.42.94.62.02.20.3
Fecal boli incidents, locomotor time 11.11.23.30.40.31.8
Change in fecal boli incidents, locomotor task1.71.64.0-0.7-0.5-2.0
Time >=10cm from walls, locomotor time 12.02.02.31.41.31.5
Bouts of movement, locomotor time 10.70.80.9-0.9-0.80.9
Total resting periods, locomotor time 10.60.61.2-0.7-0.51.1
Rest time, locomotor task time 11.01.11.71.31.30.0
Distance moved, locomotor task time 10.10.10.3-0.3-0.6-0.1
Vertical activity count, locomotor time 10.80.91.41.21.1-0.3
Time >=10cm from walls, locomotor time 20.80.82.10.50.31.4
Bouts of movement, locomotor time 20.30.30.6-0.8-0.50.2
Total resting periods, locomotor time 20.10.10.2-0.5-0.30.2
Rest time, locomotor task time 21.82.13.31.71.8-0.3
Distance moved, locomotor task time 20.70.81.5-1.0-1.20.3
Vertical activity count, locomotor time 20.30.41.0-0.1-0.3-1.0
Light reinforcement 10.10.10.20.20.5-0.3
Light reinforcement 22.63.55.01.62.21.8
Bone: marrow area0.71.62.21.51.50.5
Bone: maximum diameter0.71.23.60.20.11.9
Bone: maximum force1.62.73.0-1.6-1.71.6
Bone: maximum moment1.32.32.6-1.5-1.61.4
Mean time between licks in bursts1.72.43.5-1.3-1.4-1.9
Mean num. licks in bursts0.20.20.70.10.1-0.8
Cd content in liver1.31.51.71.31.11.2
Co content in liver1.01.13.10.50.4-1.8
Cu content in liver0.20.20.4-0.5-0.60.1
Fe content in liver0.20.20.5-0.2-0.40.7
K content in liver1.21.22.0-1.3-1.4-0.2
Mg content in liver0.00.00.0-0.1-0.2-0.2
Mn content in liver1.31.52.0-1.2-1.01.4
Na content in liver0.60.60.9-1.0-0.70.6
Rb content in liver0.91.21.81.41.2-0.5
Se content in liver1.61.94.70.80.72.2
Sr content in liver2.11.92.8-1.7-1.50.9
Zn content in liver0.60.60.8-0.9-0.80.6
Bone: minimum diameter0.71.42.01.31.40.6
Time in familiar zone, hab. session 10.10.10.20.50.4-0.1
Time in novel zone, hab. session 10.40.41.20.00.0-1.1
Total zone transitions, hab. session 10.30.40.7-0.8-0.70.2
Total locomotion distance, hab. session 10.20.30.50.70.7-0.0
Locomotion velocity, hab. session 10.00.00.10.30.20.1
Time in familiar zone, hab. session 21.21.22.6-0.7-0.8-1.6
Time in novel zone, hab. session 20.30.30.70.30.20.8
Total zone transitions, hab. session 20.81.01.6-1.3-1.2-0.2
Total locomotion distance, hab. session 20.10.10.4-0.0-0.1-0.6
Locomotion velocity, hab. session 20.10.10.10.30.2-0.2
Novel to familiar place preference ratio1.31.43.8-0.3-0.52.0
Novelty place preference1.01.03.00.1-0.21.7
Time in novel zone, NPP test0.70.72.10.0-0.21.5
Total zone transitions, NPP test1.31.92.8-1.7-1.60.3
Total locomotion distance, NPP test0.10.10.1-0.2-0.2-0.4
Locomotion velocity, NPP test0.00.00.0-0.1-0.2-0.1
Intraocular pressure1.92.63.01.71.41.7
Delta distance traveled before/after self-admin0.30.30.8-0.1-0.2-0.9
Delta ambulatory time before/after self-admin0.50.61.4-0.3-0.3-1.2
Parametrial fat weight1.42.74.92.21.70.4
Pavlov. Cond. lever latency0.20.20.40.50.6-0.3
Pavlov. Cond. magazine entry latency0.20.20.4-0.3-0.40.6
Pavlov. Cond. change in total contacts0.70.82.20.30.31.5
Pavlov. Cond. index score0.20.20.5-0.3-0.40.7
Pavlov. Cond. latency score0.10.10.1-0.2-0.30.4
Pavlov. Cond. lever contacts0.00.10.1-0.2-0.3-0.1
Pavlov. Cond. magazine entry number0.40.51.50.20.3-1.2
Pavlov. Cond. intertrial magazine entries0.81.01.31.11.10.6
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.5-0.60.8
Pavlov. Cond. response bias0.20.20.6-0.1-0.20.8
Pavlov. Cond. lever latency0.40.61.50.20.4-1.2
Pavlov. Cond. magazine entry latency2.42.74.2-1.9-2.00.8
Pavlov. Cond. change in total contacts1.62.36.3-0.5-0.62.5
Pavlov. Cond. index score1.51.92.8-1.1-1.31.7
Pavlov. Cond. latency score1.21.52.5-0.9-1.11.6
Pavlov. Cond. lever contacts0.40.61.6-0.2-0.41.3
Pavlov. Cond. magazine entry number3.54.35.52.32.3-1.6
Pavlov. Cond. intertrial magazine entries0.60.81.31.11.1-0.1
Pavlov. Cond. lever-magazine prob. diff.1.72.22.6-1.3-1.51.6
Pavlov. Cond. response bias1.11.42.3-0.9-1.11.5
Time in closed arm before self-admin0.50.61.80.2-0.01.3
Time in closed arm after self-admin0.40.41.1-0.10.1-1.0
Time in open arm before self-admin2.32.57.6-0.1-0.1-2.8
Time in open arm after self-admin0.10.10.10.30.0-0.3
Bone: periosteal estimation0.40.81.80.60.61.3
Bone: periosteal perimeter0.40.61.80.30.21.3
Bone: post-yield work1.82.46.50.70.62.6
Progressive ratio test 1 active lever presses2.82.94.32.02.10.5
Progressive ratio test 1 breakpoint2.42.53.71.91.90.5
Progressive ratio test 1 inactive lever presses0.70.81.31.10.9-0.4
Progressive ratio test 2 active lever presses5.15.57.52.72.61.4
Progressive ratio test 2 breakpoint5.76.39.03.03.01.1
Progressive ratio test 2 inactive lever presses8.09.214.13.83.31.5
Incentive Sensitization - Responses1.11.11.31.11.01.1
Incentive Sensitization - Breakpoint1.51.51.71.31.21.2
Sum of active levers in priming session hrs 5-62.52.47.0-0.3-0.42.6
Progressive ratio1.21.42.1-1.5-1.30.8
Food seeking constrained by brief footshock0.70.91.5-0.8-0.8-1.2
Seeking ratio, punishment vs. effort1.41.73.51.00.8-1.9
Retroperitoneal fat weight3.712.319.94.54.10.1
Reaction time number correct0.20.20.5-0.5-0.7-0.1
Reaction time mean minus median2.12.74.2-1.2-1.62.1
Reaction time mean minus median AUC1.21.52.0-0.8-1.41.4
Reaction time num false alarms1.21.75.1-0.10.1-2.3
Reaction time num false alarms AUC1.31.84.4-0.7-0.6-2.1
Reaction time trials correct on left0.20.20.5-0.5-0.7-0.1
Reaction time trials on left0.20.30.6-0.5-0.8-0.1
Reaction time mean0.60.82.10.50.21.4
Reaction time mean AUC0.70.92.40.60.31.5
Median of all reaction times0.60.81.30.80.61.1
Reaction time omissions0.50.71.1-0.8-1.00.6
Reaction time false alarm rate0.91.23.6-0.20.1-1.9
Reaction time premature initiation rate3.64.86.0-2.4-2.3-1.7
Reaction time premature initiations4.46.28.3-2.8-2.9-1.5
Std. dev. reaction times0.71.02.7-0.3-0.61.6
Reaction time trials completed0.20.30.6-0.5-0.8-0.1
Reaction time trials AUC0.20.20.5-0.4-0.7-0.3
Run reversals in cocaine runway, females2.22.14.0-1.2-1.0-2.0
Run reversals in cocaine runway, males0.10.10.20.40.0-0.3
Latency to leave start box in cocaine runway0.10.10.20.30.40.2
Latency to leave start box in cocaine runway, F0.10.10.2-0.00.10.5
Latency to leave start box in cocaine runway, M0.10.10.20.20.4-0.1
Std. dev. time between licks in bursts1.11.43.9-0.3-0.4-2.0
Total sessions with >9 infusions1.31.41.91.41.4-0.7
Short access day 1 total inactive lever presses3.23.65.62.22.4-0.5
Short access day 10 total inactive lever presses2.62.93.11.71.8-1.6
Short access day 1 total infusions2.02.13.21.71.8-0.3
Short access day 10 total infusions1.31.52.51.41.60.2
Short access total infusions1.01.11.61.21.3-0.3
Short access day 1 locomotion1.41.52.31.51.4-0.6
Short access day 10 total locomotion1.11.21.91.41.3-0.3
Short access total locomotion1.01.01.31.11.2-0.6
One hour access (0.3 mA shock)8.710.215.43.93.80.9
Compulsive drug intake4.04.14.7-2.2-2.0-1.9
One hour access (shock baseline)10.712.416.34.03.92.4
Social response proportion0.60.60.7-0.7-0.80.8
Social responses0.20.30.6-0.6-0.8-0.1
Social time0.40.51.0-0.6-1.0-0.3
Soleus weight2.57.410.83.23.3-0.9
Bone: stiffness1.42.33.1-1.3-1.41.8
Tibialis anterior weight6.923.534.9-5.8-5.91.2
Time to tail flick, vehicle, before self-admin0.50.50.7-0.6-0.90.6
Time to tail flick, vehicle, after self-admin2.62.84.8-1.6-2.2-1.0
Time to tail flick, test, before self-admin0.60.61.40.50.5-1.2
Time to tail flick, test, after self-admin0.00.00.1-0.1-0.30.0
Delta time to tail flick, vehicle, before/after SA1.01.01.2-0.9-1.1-0.9
Delta time to tail flick, test, before/after SA0.90.81.1-0.8-0.81.1
Tibia length1.13.28.6-0.7-0.72.9
Ambulatory time before self-admin1.21.23.70.10.11.9
Ambulatory time after self-admin0.80.91.60.80.71.3
Bone: tissue strength0.30.30.60.30.30.8
Total heroin consumption4.04.76.8-2.6-2.60.7
Bone: trabecular number0.50.82.0-0.4-0.41.4
Bone: trabecular spacing0.50.72.00.00.1-1.4
Bone: trabecular thickness0.60.81.21.01.10.4
Bone: trabecular tissue density2.43.45.22.22.30.1
Water consumed over 24 hours0.70.91.4-1.1-1.2-0.1
Number of responses in last shaping day0.80.81.01.00.8-0.9