LOC120097103

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120097103 0.09 0.05 5.7e-12 0.13 0.12 0.11 0.11 8.7e-12 4.5e-11 1.1e-10 1.2e-10
2 Adipose gene expression LOC120097103 0.03 0.02 1.3e-03 0.02 0.02 0.01 0.01 2.5e-03 6.5e-03 1.7e-02 1.1e-02
3 Eye gene expression LOC120097103 0.22 0.13 8.3e-03 0.09 0.13 0.05 0.08 1.5e-02 4.4e-03 5.6e-02 2.3e-02
4 NAcc gene expression LOC120097103 0.03 0.02 1.8e-03 0 0 -0 0 1.2e-01 1.7e-01 5.2e-01 2.5e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.91.2-1.0-1.00.6-1.1
Area under the delay curve3.73.97.42.72.4-1.11.1
BMI with tail1.03.14.92.22.2-1.21.2
BMI without tail0.20.50.9-0.5-0.51.0-0.6
Body weight1.45.99.53.12.6-2.51.0
Weight adjusted by age2.02.34.71.21.1-2.21.3
Bone surface0.20.30.5-0.6-0.70.3-0.6
Bone volume0.10.20.2-0.3-0.40.4-0.5
Breakpoint value in progressive ratio session0.40.40.60.70.80.2-0.7
Number of licking bursts0.30.30.60.80.7-0.0-0.2
Context. condit. distance diff. score2.02.45.4-1.2-1.22.3-1.1
Locomotion velocity, session 10.10.10.20.30.4-0.1-0.4
Locomotion distance, session 10.00.00.0-0.1-0.1-0.00.0
Locomotion velocity, session 20.10.10.20.50.5-0.1-0.4
Locomotion distance, session 20.10.10.3-0.4-0.40.1-0.5
Locomotion velocity, session 30.81.01.50.91.0-1.20.8
Locomotion distance, session 30.40.50.70.90.9-0.50.2
Stereotopy head waving bouts, day 30.20.20.3-0.4-0.4-0.60.3
Stereotopy head waving duration, day 31.21.52.50.80.8-1.61.4
Locomotion velocity, session 72.72.95.1-1.2-1.22.3-1.9
Locomotion distance, session 73.94.97.1-1.8-1.82.7-2.4
Stereotopy head waving bouts, day 71.71.92.61.51.4-1.61.0
Stereotopy head waving duration, day 73.13.85.51.91.8-2.41.7
Locomotion velocity, session 80.00.10.2-0.00.20.40.1
Locomotion distance, session 80.81.12.2-0.8-0.81.5-1.0
Degree of sensitization distance8.08.011.0-2.7-2.73.3-2.6
Degree of sensitization stereotypy1.51.62.11.51.4-1.30.9
Conditioned locomotion0.40.50.9-0.6-0.80.9-0.5
Cocaine response after cond. corrected0.20.20.90.1-0.11.00.0
Cocaine response after cond. not corrected0.20.20.60.30.10.8-0.3
Cocaine response before conditioning0.30.40.60.40.4-0.8-0.7
Saline control response0.00.00.1-0.10.1-0.2-0.1
Bone: connectivity density1.92.94.1-1.8-1.90.8-2.0
Bone: cortical apparent density0.10.10.20.40.40.00.0
Bone: cortical area0.91.32.11.51.4-0.21.1
Bone: cortical porosity2.42.63.11.81.7-1.71.2
Bone: cortical porosity1.92.12.41.51.4-1.51.3
Bone: cortical thickness1.62.64.22.02.0-0.71.3
Bone: cortical thickness0.80.91.71.21.30.80.1
Bone: cortical tissue density0.00.10.20.30.40.00.1
Condit. Reinf. active minus inactive responses0.40.40.60.60.5-0.80.7
Condit. Reinf. active-inactive response ratio0.10.10.5-0.1-0.2-0.30.7
Condit. Reinf. active responses0.30.40.60.70.7-0.70.2
Condit. Reinf. inactive responses0.40.41.30.30.4-0.4-1.1
Incentive salience index mean1.61.92.41.51.4-1.51.0
Condit. Reinf. lever presses1.82.43.41.91.8-1.60.5
Condit. Reinf. active minus inactive responses0.20.20.4-0.5-0.40.6-0.4
Condit. Reinf. active-inactive response ratio0.10.10.1-0.2-0.20.30.2
Condit. Reinf. active responses0.30.50.6-0.7-0.50.8-0.7
Condit. Reinf. inactive responses1.51.82.8-1.3-1.11.2-1.7
Condit. Reinf. lever presses0.10.10.5-0.00.0-0.70.2
Condit. Reinf. lever reinforcers received0.10.10.2-0.4-0.20.4-0.4
Conditioned reinforcement - actives6.86.88.7-2.9-2.92.8-1.4
Conditioned reinforcement - inactives2.32.64.1-1.7-1.41.2-2.0
Conditioned locomotion2.02.44.2-1.4-1.32.1-1.3
Patch foraging indifference point 0 sec0.20.30.80.20.1-0.7-0.9
Patch foraging indifference point AUC0.50.61.7-0.20.10.81.3
Delay disc. indifference point, 0s delay0.30.31.20.3-0.10.3-1.1
Delay disc. indifference point, 16s delay2.52.54.31.92.1-0.71.2
Delay disc. indifference point, 2s delay0.50.51.21.10.6-0.40.5
Delay disc. indifference point, 24s delay2.32.24.62.12.0-0.40.6
Delay disc. indifference point, 4s delay3.13.34.72.22.1-1.41.5
Delay disc. indifference point, 8s delay5.05.29.33.02.6-1.61.4
Indifference point function ln k0.50.71.50.80.7-1.2-0.2
Indifference point function log k0.50.71.50.80.7-1.2-0.2
Patch foraging total patch changes 0 sec0.30.40.90.50.4-0.9-0.6
Patch foraging total patch changes 12 sec0.10.10.20.40.4-0.1-0.1
Patch foraging total patch changes 18 sec0.30.40.7-0.6-0.50.8-0.3
Patch foraging total patch changes 24 sec0.10.20.30.30.3-0.40.6
Patch foraging total patch changes 6 sec0.00.00.10.10.2-0.0-0.1
Patch foraging time to switch 0 sec0.40.61.8-0.2-0.50.5-1.3
Patch foraging water rate 0 sec0.81.31.90.91.4-1.21.1
Patch foraging water rate 12 sec0.30.50.80.20.7-0.90.9
Patch foraging water rate 18 sec4.25.76.42.52.3-2.32.4
Patch foraging water rate 24 sec0.10.20.8-0.00.10.10.9
Patch foraging water rate 6 sec1.42.03.80.81.2-1.52.0
Seeking ratio, delayed vs. immediate footshock0.40.51.9-0.2-0.2-0.0-1.4
Distance traveled before self-admin0.20.20.6-0.5-0.3-0.00.8
Distance traveled after self-admin0.10.20.6-0.3-0.20.10.7
Extensor digitorum longus weight8.131.941.05.65.5-4.96.4
Bone: elastic displacement0.10.10.1-0.4-0.3-0.0-0.4
Bone: elastic work0.50.61.00.90.7-1.00.5
Bone: endosteal estimation0.00.10.2-0.3-0.40.20.1
Bone: endosteal perimeter0.30.61.1-0.9-1.10.6-0.3
Epididymis fat weight0.20.62.00.20.00.5-1.4
Delta time in closed arm before/after self-admin0.60.60.9-1.0-0.70.4-0.7
Delta time in open arm before/after self-admin0.10.10.1-0.0-0.20.3-0.3
Diff in mean of infusions in LGA sessions4.34.76.72.62.3-2.50.8
Delay discount exponential model param4.34.58.2-2.9-2.51.3-1.4
Extinction: sum of active levers before priming0.60.61.7-0.5-0.30.8-1.3
Active lever presses in extinction session 60.70.70.9-0.8-0.50.9-0.9
Bone: final force0.91.42.31.51.4-0.61.0
Bone: final moment0.91.52.21.51.4-0.91.1
Food consumed during 24 hour testing period0.20.20.6-0.00.0-0.50.7
Glucose0.10.20.30.50.30.40.3
Heart weight0.10.10.20.1-0.0-0.40.4
Delay discount hyperbolic model param4.54.88.4-2.9-2.51.4-1.6
Intermittent access intake day 1-15 change0.60.61.2-0.7-1.10.7-0.4
Intermittent access intake escalation0.60.61.2-0.7-1.10.7-0.1
Intermittent access intake escalation 20.30.30.6-0.5-0.80.3-0.1
Intermitt. access day 1 inactive lever presses1.21.32.6-1.0-1.00.7-1.6
Intermitt. access day 15 inactive lever presses0.20.20.8-0.1-0.1-0.90.3
Intermitt. access escalation Index0.70.61.5-0.4-0.81.2-0.2
Intermittent access day 1 total infusions0.40.51.2-0.5-0.61.10.4
Intermittent access day 15 total infusions1.51.72.9-1.2-1.61.7-0.1
Intermittent access terminal intake (last 3 days)1.31.42.1-1.0-1.41.40.7
Intermittent access total infusions1.71.93.9-1.3-1.42.0-0.2
Intermittent access day 1 locomotion0.10.10.10.30.30.3-0.1
Intermittent access day 15 total locomotion0.30.30.6-0.5-0.60.8-0.2
Intermittent access total locomotion0.10.10.20.1-0.10.5-0.2
Intermittent access standard deviation0.80.91.2-1.0-1.10.51.0
Left kidney weight1.33.86.01.91.6-2.51.8
Right kidney weight1.54.28.32.11.9-2.90.5
Cocaine induced anxiety0.40.50.80.40.5-0.90.9
Post-drug Anxiety0.40.41.20.30.5-1.1-0.4
Baseline Anxiety0.60.62.3-0.2-0.10.3-1.5
Tail length0.51.42.1-1.2-1.40.6-1.3
Length with tail0.31.12.81.10.7-1.7-0.2
Length without tail3.57.710.13.12.7-3.21.9
Times rat made contact with spout0.10.10.2-0.2-0.30.40.1
Lifetime Intake2.02.34.0-1.5-1.72.0-0.3
Liver weight, left3.14.96.02.31.9-2.12.5
Liver weight, right1.83.04.41.81.7-1.42.1
Locomotor activity3.14.98.12.32.0-2.81.5
Locomotor testing distance0.30.51.50.40.2-1.2-0.4
Locomotor testing rearing0.60.91.7-0.6-0.7-1.0-1.3
Locomotion in novel chamber0.60.71.11.11.0-0.80.3
Locomotion in novel chamber post-restriction0.40.51.50.50.5-0.11.2
Fecal boli incidents, locomotor time 10.70.82.40.80.0-0.31.5
Change in fecal boli incidents, locomotor task0.20.20.6-0.30.0-0.3-0.8
Time >=10cm from walls, locomotor time 10.20.20.5-0.1-0.1-0.7-0.4
Bouts of movement, locomotor time 10.10.10.4-0.1-0.30.20.6
Total resting periods, locomotor time 10.20.30.5-0.3-0.40.70.5
Rest time, locomotor task time 10.10.10.20.10.20.50.1
Distance moved, locomotor task time 10.20.20.3-0.5-0.50.1-0.5
Vertical activity count, locomotor time 10.40.40.80.20.3-0.90.7
Time >=10cm from walls, locomotor time 20.10.10.3-0.5-0.3-0.50.1
Bouts of movement, locomotor time 21.31.42.31.51.3-0.61.1
Total resting periods, locomotor time 21.82.03.11.81.5-0.71.4
Rest time, locomotor task time 21.82.04.41.41.3-0.22.1
Distance moved, locomotor task time 20.80.91.6-1.1-0.80.3-1.3
Vertical activity count, locomotor time 20.10.10.2-0.5-0.2-0.2-0.4
Light reinforcement 10.30.51.4-0.3-0.30.7-1.2
Light reinforcement 20.50.61.2-0.7-0.81.1-0.6
Bone: marrow area0.10.10.3-0.4-0.50.3-0.0
Bone: maximum diameter0.40.71.50.80.70.11.2
Bone: maximum force1.22.03.21.81.6-0.71.3
Bone: maximum moment1.22.13.01.71.5-0.91.4
Mean time between licks in bursts3.75.26.6-2.6-2.51.5-2.4
Mean num. licks in bursts0.40.50.9-0.9-0.90.40.3
Cd content in liver0.30.30.5-0.7-0.70.1-0.3
Co content in liver0.80.91.80.90.90.01.3
Cu content in liver0.40.40.80.50.6-0.70.9
Fe content in liver0.91.12.0-1.0-1.10.4-1.4
K content in liver0.60.60.9-0.5-0.51.0-1.0
Mg content in liver0.91.01.3-1.0-1.01.1-0.8
Mn content in liver2.02.23.6-1.2-1.21.6-1.9
Na content in liver6.26.59.32.62.6-3.01.9
Rb content in liver0.91.11.7-1.3-1.30.8-0.8
Se content in liver0.40.41.5-0.2-0.1-0.4-1.2
Sr content in liver1.71.62.2-1.5-1.50.7-1.2
Zn content in liver1.82.03.81.21.2-1.91.2
Bone: minimum diameter0.40.71.30.90.8-0.31.1
Time in familiar zone, hab. session 10.50.41.0-0.4-0.41.0-0.6
Time in novel zone, hab. session 11.61.61.71.31.3-1.31.2
Total zone transitions, hab. session 10.30.40.60.80.8-0.20.4
Total locomotion distance, hab. session 10.10.10.20.20.20.3-0.5
Locomotion velocity, hab. session 10.10.10.30.20.20.0-0.5
Time in familiar zone, hab. session 20.20.20.3-0.4-0.40.6-0.1
Time in novel zone, hab. session 20.00.00.10.10.2-0.10.1
Total zone transitions, hab. session 20.40.50.60.60.7-0.80.7
Total locomotion distance, hab. session 20.00.10.10.30.4-0.10.2
Locomotion velocity, hab. session 20.20.30.50.60.7-0.40.5
Novel to familiar place preference ratio0.30.30.6-0.5-0.50.8-0.5
Novelty place preference0.30.30.4-0.5-0.50.7-0.6
Time in novel zone, NPP test0.20.20.2-0.3-0.40.5-0.4
Total zone transitions, NPP test0.00.00.2-0.00.00.1-0.4
Total locomotion distance, NPP test1.72.33.9-1.4-1.41.3-2.0
Locomotion velocity, NPP test1.72.43.7-1.4-1.41.4-1.9
Intraocular pressure1.92.73.9-2.0-2.01.3-1.2
Delta distance traveled before/after self-admin0.20.20.30.50.4-0.30.4
Delta ambulatory time before/after self-admin0.10.10.20.30.2-0.00.4
Parametrial fat weight3.77.29.2-2.5-2.43.0-2.7
Pavlov. Cond. lever latency0.60.81.2-1.1-1.00.9-0.3
Pavlov. Cond. magazine entry latency0.60.71.20.90.9-1.10.3
Pavlov. Cond. change in total contacts2.83.03.71.91.9-1.71.5
Pavlov. Cond. index score2.32.94.02.01.9-1.90.7
Pavlov. Cond. latency score1.62.02.91.71.6-1.60.5
Pavlov. Cond. lever contacts1.31.52.01.41.3-1.40.5
Pavlov. Cond. magazine entry number1.72.12.7-1.6-1.51.6-0.9
Pavlov. Cond. intertrial magazine entries0.00.00.10.00.0-0.3-0.3
Pavlov. Cond. lever-magazine prob. diff.2.93.64.92.22.1-2.10.9
Pavlov. Cond. response bias2.53.03.71.91.8-1.91.1
Pavlov. Cond. lever latency1.62.24.0-1.0-1.12.0-1.5
Pavlov. Cond. magazine entry latency1.82.12.91.71.7-1.50.6
Pavlov. Cond. change in total contacts4.15.68.02.02.2-2.82.4
Pavlov. Cond. index score2.73.55.31.81.9-2.31.5
Pavlov. Cond. latency score2.53.15.21.61.7-2.31.3
Pavlov. Cond. lever contacts1.31.83.50.91.0-1.91.4
Pavlov. Cond. magazine entry number0.70.91.4-1.2-1.20.8-0.2
Pavlov. Cond. intertrial magazine entries9.512.414.6-3.8-3.83.2-3.2
Pavlov. Cond. lever-magazine prob. diff.2.73.45.01.81.9-2.21.4
Pavlov. Cond. response bias1.92.63.91.51.6-2.01.4
Time in closed arm before self-admin2.63.03.71.81.8-1.91.2
Time in closed arm after self-admin0.50.61.00.60.9-1.00.0
Time in open arm before self-admin0.80.91.4-1.2-1.11.0-0.1
Time in open arm after self-admin0.50.61.0-0.7-1.00.7-0.5
Bone: periosteal estimation0.10.20.40.50.30.20.6
Bone: periosteal perimeter0.00.00.10.00.10.30.1
Bone: post-yield work0.70.93.00.20.21.70.7
Progressive ratio test 1 active lever presses0.50.61.6-0.3-0.41.20.7
Progressive ratio test 1 breakpoint0.50.61.7-0.2-0.31.30.7
Progressive ratio test 1 inactive lever presses0.91.01.3-1.0-1.11.0-0.8
Progressive ratio test 2 active lever presses2.52.74.1-1.7-2.02.0-0.2
Progressive ratio test 2 breakpoint1.82.03.3-1.4-1.81.6-0.1
Progressive ratio test 2 inactive lever presses1.61.82.7-1.6-1.61.3-0.5
Incentive Sensitization - Responses2.02.04.1-1.7-2.00.9-0.7
Incentive Sensitization - Breakpoint2.12.14.3-1.7-2.10.9-0.7
Sum of active levers in priming session hrs 5-60.80.81.3-0.9-0.61.2-0.8
Progressive ratio1.21.42.41.10.9-1.51.0
Food seeking constrained by brief footshock0.20.30.5-0.6-0.10.7-0.5
Seeking ratio, punishment vs. effort0.50.61.3-0.8-0.41.2-0.6
Retroperitoneal fat weight0.62.03.6-0.8-1.41.9-1.4
Reaction time number correct0.30.51.0-0.7-1.00.6-0.3
Reaction time mean minus median0.70.91.70.90.9-1.30.4
Reaction time mean minus median AUC0.30.41.00.50.5-1.0-0.1
Reaction time num false alarms0.60.81.31.20.8-1.0-0.2
Reaction time num false alarms AUC0.60.81.51.20.8-1.00.2
Reaction time trials correct on left0.30.51.0-0.7-1.00.6-0.3
Reaction time trials on left0.40.61.2-0.8-1.10.6-0.4
Reaction time mean0.20.20.5-0.3-0.1-0.70.6
Reaction time mean AUC0.30.41.1-0.00.1-1.10.7
Median of all reaction times0.20.20.5-0.7-0.4-0.40.4
Reaction time omissions2.02.73.8-1.8-2.01.0-1.7
Reaction time false alarm rate0.91.22.11.41.2-1.10.2
Reaction time premature initiation rate0.30.40.70.60.9-0.50.6
Reaction time premature initiations0.00.10.20.10.2-0.10.4
Std. dev. reaction times0.10.10.40.00.2-0.60.4
Reaction time trials completed0.40.61.2-0.8-1.10.6-0.4
Reaction time trials AUC0.50.71.4-0.9-1.20.7-0.4
Run reversals in cocaine runway, females0.50.41.2-1.1-0.00.5-0.6
Run reversals in cocaine runway, males3.93.86.61.71.9-1.52.6
Latency to leave start box in cocaine runway0.91.01.9-1.2-1.40.70.5
Latency to leave start box in cocaine runway, F0.30.41.0-0.4-0.5-0.11.0
Latency to leave start box in cocaine runway, M1.21.12.1-1.3-1.50.7-0.6
Std. dev. time between licks in bursts1.92.34.2-1.5-1.50.7-2.1
Total sessions with >9 infusions1.31.42.4-0.9-1.51.2-1.0
Short access day 1 total inactive lever presses0.70.71.0-0.7-0.81.00.9
Short access day 10 total inactive lever presses0.91.01.6-0.9-0.80.9-1.3
Short access day 1 total infusions2.93.15.0-1.8-2.22.0-0.4
Short access day 10 total infusions0.20.20.5-0.00.00.70.6
Short access total infusions0.60.71.2-0.7-1.11.10.0
Short access day 1 locomotion0.10.10.2-0.2-0.5-0.1-0.0
Short access day 10 total locomotion0.50.50.80.90.7-0.7-0.6
Short access total locomotion0.20.20.30.50.3-0.5-0.6
One hour access (0.3 mA shock)0.91.02.6-0.7-1.01.6-0.0
Compulsive drug intake0.40.41.10.30.40.4-1.0
One hour access (shock baseline)1.31.52.2-1.1-1.51.50.6
Social response proportion2.52.74.0-1.8-2.01.6-1.0
Social responses3.84.96.2-2.1-2.22.0-2.5
Social time0.20.20.5-0.5-0.4-0.7-0.2
Soleus weight0.30.91.41.21.1-0.41.0
Bone: stiffness0.81.22.01.41.3-0.70.9
Tibialis anterior weight7.826.728.45.25.3-4.85.3
Time to tail flick, vehicle, before self-admin1.71.73.51.31.9-1.30.1
Time to tail flick, vehicle, after self-admin1.92.13.01.21.6-1.11.7
Time to tail flick, test, before self-admin0.20.20.40.20.3-0.60.6
Time to tail flick, test, after self-admin4.64.86.2-2.5-2.32.0-1.9
Delta time to tail flick, vehicle, before/after SA0.60.61.0-0.7-0.80.61.0
Delta time to tail flick, test, before/after SA4.94.45.5-2.3-2.02.1-1.9
Tibia length0.82.45.91.41.3-2.4-0.3
Ambulatory time before self-admin0.10.10.2-0.3-0.00.10.4
Ambulatory time after self-admin0.50.51.40.50.6-0.51.2
Bone: tissue strength0.20.20.5-0.5-0.70.10.1
Total heroin consumption0.70.81.40.80.7-0.71.2
Bone: trabecular number1.01.62.2-1.2-1.30.9-1.5
Bone: trabecular spacing1.92.53.61.91.9-1.11.3
Bone: trabecular thickness0.20.30.50.70.7-0.40.1
Bone: trabecular tissue density2.02.94.01.92.0-1.61.2
Water consumed over 24 hours1.31.52.11.21.1-1.21.5
Number of responses in last shaping day0.20.20.30.5-0.0-0.50.5