LOC120097028

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression LOC120097028 0.04 0.04 1.5e-03 0.02 0.01 0 0 6.9e-03 1.3e-02 1.0e-01 1.1e-01
2 Adipose gene expression LOC120097028 0.04 0.04 3.0e-04 0.03 0.03 0.03 0.03 2.2e-04 2.7e-04 3.6e-04 2.9e-04
3 RMTg gene expression LOC120097028 0.16 0.14 2.3e-03 0.06 0.07 0.05 0.05 1.2e-02 7.8e-03 2.2e-02 1.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.42.32.4-1.5-1.51.5
Area under the delay curve0.00.00.0-0.10.1-0.2
BMI with tail0.51.51.71.31.2-1.2
BMI without tail0.71.41.5-1.2-1.21.2
Body weight0.51.92.01.41.3-1.3
Weight adjusted by age1.71.92.11.31.4-1.4
Bone surface0.51.01.0-1.0-1.01.0
Bone volume0.71.21.2-1.1-1.11.1
Breakpoint value in progressive ratio session0.00.00.00.20.2-0.2
Number of licking bursts0.00.00.00.10.1-0.1
Context. condit. distance diff. score0.91.11.1-1.0-1.01.0
Locomotion velocity, session 10.10.10.20.40.4-0.4
Locomotion distance, session 10.00.00.0-0.2-0.20.1
Locomotion velocity, session 20.00.00.0-0.2-0.20.2
Locomotion distance, session 20.00.00.0-0.2-0.20.2
Locomotion velocity, session 30.40.50.50.70.7-0.7
Locomotion distance, session 30.00.00.0-0.2-0.20.2
Stereotopy head waving bouts, day 30.60.70.80.80.9-0.9
Stereotopy head waving duration, day 32.63.13.11.71.8-1.8
Locomotion velocity, session 74.65.05.4-2.3-2.22.2
Locomotion distance, session 73.44.34.5-2.1-2.02.1
Stereotopy head waving bouts, day 71.72.02.11.31.5-1.4
Stereotopy head waving duration, day 72.53.03.11.71.8-1.7
Locomotion velocity, session 80.00.00.0-0.1-0.10.1
Locomotion distance, session 80.60.91.0-1.0-1.01.0
Degree of sensitization distance4.74.74.8-2.2-2.12.2
Degree of sensitization stereotypy1.21.31.41.11.2-1.1
Conditioned locomotion0.00.00.0-0.2-0.20.2
Cocaine response after cond. corrected0.30.30.30.50.5-0.5
Cocaine response after cond. not corrected0.20.20.20.40.4-0.4
Cocaine response before conditioning0.10.20.2-0.4-0.40.4
Saline control response0.20.30.3-0.5-0.50.5
Bone: connectivity density2.84.34.4-2.1-2.12.1
Bone: cortical apparent density0.00.00.0-0.1-0.20.2
Bone: cortical area0.00.00.0-0.1-0.00.1
Bone: cortical porosity1.41.61.61.21.3-1.2
Bone: cortical porosity0.60.60.60.80.8-0.8
Bone: cortical thickness0.00.00.0-0.2-0.10.2
Bone: cortical thickness0.00.00.0-0.2-0.20.2
Bone: cortical tissue density0.00.00.0-0.1-0.20.2
Condit. Reinf. active minus inactive responses0.40.40.50.60.7-0.7
Condit. Reinf. active-inactive response ratio2.02.22.31.41.5-1.5
Condit. Reinf. active responses0.00.00.0-0.1-0.0-0.0
Condit. Reinf. inactive responses2.83.43.4-1.8-1.91.8
Incentive salience index mean0.70.80.90.90.9-0.9
Condit. Reinf. lever presses0.20.30.30.60.5-0.6
Condit. Reinf. active minus inactive responses0.30.40.4-0.6-0.60.6
Condit. Reinf. active-inactive response ratio0.10.10.10.40.4-0.4
Condit. Reinf. active responses0.91.21.2-1.1-1.11.1
Condit. Reinf. inactive responses2.32.92.9-1.7-1.71.7
Condit. Reinf. lever presses0.10.10.1-0.3-0.30.3
Condit. Reinf. lever reinforcers received0.60.80.8-0.9-0.90.9
Conditioned reinforcement - actives2.72.72.7-1.7-1.71.6
Conditioned reinforcement - inactives3.03.43.4-1.8-1.81.8
Conditioned locomotion1.01.21.2-1.1-1.11.1
Patch foraging indifference point 0 sec2.23.63.6-1.9-1.91.9
Patch foraging indifference point AUC0.60.70.90.90.7-0.8
Delay disc. indifference point, 0s delay0.30.40.4-0.6-0.60.6
Delay disc. indifference point, 16s delay0.30.40.6-0.8-0.50.5
Delay disc. indifference point, 2s delay1.41.51.61.21.3-1.3
Delay disc. indifference point, 24s delay0.10.10.20.20.4-0.4
Delay disc. indifference point, 4s delay1.51.61.71.21.2-1.3
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.20.2
Indifference point function ln k0.00.00.0-0.2-0.10.1
Indifference point function log k0.00.00.0-0.2-0.10.1
Patch foraging total patch changes 0 sec1.82.93.0-1.7-1.71.7
Patch foraging total patch changes 12 sec0.71.01.1-0.9-1.01.0
Patch foraging total patch changes 18 sec2.02.62.8-1.5-1.71.6
Patch foraging total patch changes 24 sec0.00.00.0-0.0-0.20.1
Patch foraging total patch changes 6 sec0.30.50.5-0.6-0.70.7
Patch foraging time to switch 0 sec0.81.21.2-1.1-1.11.1
Patch foraging water rate 0 sec0.40.60.60.80.8-0.8
Patch foraging water rate 12 sec0.71.01.11.01.0-1.0
Patch foraging water rate 18 sec3.04.14.22.02.1-2.0
Patch foraging water rate 24 sec0.10.10.10.30.4-0.3
Patch foraging water rate 6 sec2.13.13.21.81.8-1.8
Seeking ratio, delayed vs. immediate footshock1.11.31.5-1.2-1.01.1
Distance traveled before self-admin1.01.11.21.11.1-1.0
Distance traveled after self-admin2.32.52.61.61.6-1.6
Extensor digitorum longus weight12.850.350.37.17.1-7.1
Bone: elastic displacement0.60.70.8-0.9-0.80.8
Bone: elastic work0.30.40.5-0.7-0.60.6
Bone: endosteal estimation0.10.30.30.50.6-0.5
Bone: endosteal perimeter0.10.20.20.40.4-0.4
Epididymis fat weight2.25.25.3-2.3-2.32.3
Delta time in closed arm before/after self-admin2.22.12.2-1.5-1.41.5
Delta time in open arm before/after self-admin0.00.00.1-0.2-0.30.2
Diff in mean of infusions in LGA sessions2.73.03.21.81.7-1.7
Delay discount exponential model param0.10.10.2-0.2-0.40.5
Extinction: sum of active levers before priming2.62.62.7-1.6-1.61.6
Active lever presses in extinction session 60.40.40.5-0.7-0.70.6
Bone: final force0.10.20.20.40.5-0.4
Bone: final moment0.10.10.20.30.4-0.4
Food consumed during 24 hour testing period0.20.30.3-0.5-0.50.5
Glucose0.00.00.0-0.1-0.20.2
Heart weight0.00.00.0-0.1-0.10.1
Delay discount hyperbolic model param0.40.40.5-0.5-0.70.7
Intermittent access intake day 1-15 change2.12.02.1-1.4-1.41.4
Intermittent access intake escalation1.31.31.3-1.1-1.11.2
Intermittent access intake escalation 20.40.40.4-0.6-0.60.6
Intermitt. access day 1 inactive lever presses0.10.10.1-0.3-0.30.3
Intermitt. access day 15 inactive lever presses0.00.00.0-0.1-0.10.1
Intermitt. access escalation Index0.50.40.40.60.6-0.6
Intermittent access day 1 total infusions0.00.00.0-0.2-0.20.2
Intermittent access day 15 total infusions0.91.11.1-1.0-1.01.0
Intermittent access terminal intake (last 3 days)0.20.20.2-0.4-0.40.5
Intermittent access total infusions0.40.50.5-0.7-0.70.7
Intermittent access day 1 locomotion0.30.30.3-0.6-0.60.6
Intermittent access day 15 total locomotion1.51.61.6-1.3-1.31.3
Intermittent access total locomotion0.50.50.5-0.7-0.70.7
Intermittent access standard deviation1.21.31.3-1.1-1.11.1
Left kidney weight0.30.90.91.00.9-0.9
Right kidney weight0.10.30.3-0.5-0.50.5
Cocaine induced anxiety0.10.10.10.40.4-0.4
Post-drug Anxiety0.50.50.5-0.7-0.70.7
Baseline Anxiety0.80.80.8-0.9-0.90.9
Tail length0.92.62.6-1.6-1.61.6
Length with tail0.10.30.30.50.5-0.5
Length without tail3.88.38.42.92.9-2.9
Times rat made contact with spout0.40.50.5-0.7-0.70.7
Lifetime Intake0.40.50.5-0.7-0.70.7
Liver weight, left2.23.63.61.91.9-1.9
Liver weight, right0.71.21.21.11.1-1.1
Locomotor activity1.52.42.51.61.6-1.5
Locomotor testing distance0.00.00.00.00.00.0
Locomotor testing rearing0.20.30.3-0.5-0.50.6
Locomotion in novel chamber0.20.20.3-0.6-0.40.5
Locomotion in novel chamber post-restriction0.60.80.90.80.9-0.9
Fecal boli incidents, locomotor time 10.80.90.90.91.0-0.9
Change in fecal boli incidents, locomotor task0.10.10.10.30.3-0.3
Time >=10cm from walls, locomotor time 10.91.01.0-1.0-1.01.0
Bouts of movement, locomotor time 15.25.75.82.42.4-2.3
Total resting periods, locomotor time 15.15.65.72.42.4-2.3
Rest time, locomotor task time 13.33.63.71.91.9-1.9
Distance moved, locomotor task time 13.33.63.7-1.9-1.91.9
Vertical activity count, locomotor time 11.11.11.2-1.0-1.11.1
Time >=10cm from walls, locomotor time 20.40.40.50.70.6-0.6
Bouts of movement, locomotor time 24.04.34.52.12.1-2.0
Total resting periods, locomotor time 24.54.85.02.22.2-2.2
Rest time, locomotor task time 21.11.31.61.31.1-1.1
Distance moved, locomotor task time 22.93.43.5-1.9-1.81.8
Vertical activity count, locomotor time 20.40.40.5-0.6-0.70.6
Light reinforcement 13.46.36.4-2.5-2.52.5
Light reinforcement 21.41.81.9-1.4-1.41.4
Bone: marrow area0.10.20.20.40.4-0.4
Bone: maximum diameter0.30.60.70.80.8-0.8
Bone: maximum force0.20.40.50.60.7-0.6
Bone: maximum moment0.10.20.30.40.5-0.5
Mean time between licks in bursts2.02.82.8-1.7-1.71.7
Mean num. licks in bursts0.40.50.5-0.7-0.70.7
Cd content in liver0.30.30.4-0.5-0.60.6
Co content in liver3.94.64.72.22.1-2.1
Cu content in liver0.50.60.60.80.8-0.8
Fe content in liver2.12.52.6-1.6-1.61.6
K content in liver0.60.60.6-0.8-0.80.8
Mg content in liver1.31.31.3-1.1-1.11.1
Mn content in liver2.12.42.4-1.5-1.51.5
Na content in liver0.60.70.70.80.8-0.8
Rb content in liver0.20.30.3-0.5-0.50.6
Se content in liver0.91.11.2-1.1-1.01.0
Sr content in liver0.40.40.5-0.5-0.70.7
Zn content in liver1.01.11.11.01.0-1.0
Bone: minimum diameter0.10.30.30.50.6-0.5
Time in familiar zone, hab. session 10.00.00.00.20.2-0.2
Time in novel zone, hab. session 11.21.21.21.11.1-1.1
Total zone transitions, hab. session 10.20.20.30.50.5-0.5
Total locomotion distance, hab. session 10.00.00.0-0.1-0.10.1
Locomotion velocity, hab. session 10.10.20.2-0.4-0.40.4
Time in familiar zone, hab. session 22.02.12.11.41.4-1.5
Time in novel zone, hab. session 20.80.80.8-0.9-0.90.9
Total zone transitions, hab. session 21.41.81.81.31.3-1.4
Total locomotion distance, hab. session 20.20.30.30.50.5-0.5
Locomotion velocity, hab. session 20.50.70.70.80.8-0.9
Novel to familiar place preference ratio1.61.61.7-1.3-1.31.3
Novelty place preference1.21.31.3-1.1-1.11.1
Time in novel zone, NPP test0.60.60.7-0.8-0.80.8
Total zone transitions, NPP test0.20.30.3-0.5-0.50.5
Total locomotion distance, NPP test2.73.73.7-1.9-1.91.9
Locomotion velocity, NPP test2.63.73.7-1.9-1.91.9
Intraocular pressure0.60.90.9-1.0-0.90.9
Delta distance traveled before/after self-admin2.32.52.61.51.6-1.6
Delta ambulatory time before/after self-admin2.22.42.51.51.5-1.6
Parametrial fat weight3.46.56.8-2.5-2.62.6
Pavlov. Cond. lever latency0.00.00.0-0.00.0-0.0
Pavlov. Cond. magazine entry latency0.00.10.1-0.2-0.20.2
Pavlov. Cond. change in total contacts1.01.11.11.01.0-1.0
Pavlov. Cond. index score0.10.10.10.30.2-0.3
Pavlov. Cond. latency score0.00.00.00.10.1-0.1
Pavlov. Cond. lever contacts0.00.00.0-0.0-0.10.1
Pavlov. Cond. magazine entry number0.40.50.5-0.7-0.70.7
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.3-0.30.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.20.40.4-0.4
Pavlov. Cond. response bias0.10.20.20.40.4-0.4
Pavlov. Cond. lever latency0.30.50.5-0.7-0.70.7
Pavlov. Cond. magazine entry latency0.10.10.1-0.3-0.30.3
Pavlov. Cond. change in total contacts1.62.22.21.51.5-1.5
Pavlov. Cond. index score0.50.60.60.80.8-0.8
Pavlov. Cond. latency score0.30.40.40.60.6-0.6
Pavlov. Cond. lever contacts0.40.50.50.70.7-0.7
Pavlov. Cond. magazine entry number0.10.10.10.20.2-0.3
Pavlov. Cond. intertrial magazine entries6.07.97.9-2.8-2.82.8
Pavlov. Cond. lever-magazine prob. diff.0.60.70.80.90.9-0.9
Pavlov. Cond. response bias0.40.60.60.80.8-0.8
Time in closed arm before self-admin2.02.22.31.51.5-1.5
Time in closed arm after self-admin0.70.70.70.80.8-0.8
Time in open arm before self-admin0.10.10.10.30.4-0.3
Time in open arm after self-admin0.10.10.1-0.4-0.40.3
Bone: periosteal estimation0.00.10.10.30.3-0.3
Bone: periosteal perimeter0.00.00.00.10.2-0.1
Bone: post-yield work0.10.20.2-0.4-0.40.4
Progressive ratio test 1 active lever presses0.20.20.20.50.5-0.4
Progressive ratio test 1 breakpoint0.10.10.10.30.3-0.3
Progressive ratio test 1 inactive lever presses1.61.81.8-1.3-1.31.3
Progressive ratio test 2 active lever presses0.20.20.2-0.5-0.50.5
Progressive ratio test 2 breakpoint0.30.30.3-0.5-0.50.5
Progressive ratio test 2 inactive lever presses0.40.40.4-0.7-0.70.7
Incentive Sensitization - Responses1.01.01.0-1.0-1.01.0
Incentive Sensitization - Breakpoint1.41.41.4-1.2-1.21.2
Sum of active levers in priming session hrs 5-60.10.10.1-0.3-0.20.2
Progressive ratio0.20.20.3-0.5-0.40.4
Food seeking constrained by brief footshock1.21.51.61.21.3-1.3
Seeking ratio, punishment vs. effort1.01.21.31.11.1-1.1
Retroperitoneal fat weight0.20.60.6-0.8-0.70.8
Reaction time number correct0.60.80.91.00.9-0.9
Reaction time mean minus median0.20.20.30.50.4-0.4
Reaction time mean minus median AUC0.10.10.20.40.3-0.4
Reaction time num false alarms0.00.00.10.20.2-0.2
Reaction time num false alarms AUC0.00.00.0-0.00.0-0.1
Reaction time trials correct on left0.60.80.91.00.9-0.9
Reaction time trials on left0.40.60.70.80.7-0.8
Reaction time mean0.10.20.20.40.4-0.5
Reaction time mean AUC0.30.40.40.60.6-0.7
Median of all reaction times0.00.00.10.10.2-0.2
Reaction time omissions2.33.13.2-1.7-1.81.8
Reaction time false alarm rate0.10.20.2-0.4-0.40.4
Reaction time premature initiation rate1.31.71.91.21.4-1.3
Reaction time premature initiations2.02.82.91.61.7-1.7
Std. dev. reaction times0.10.20.30.50.4-0.4
Reaction time trials completed0.40.60.70.80.7-0.8
Reaction time trials AUC0.40.60.60.80.7-0.8
Run reversals in cocaine runway, females4.24.14.2-2.0-2.12.0
Run reversals in cocaine runway, males2.52.42.41.51.5-1.5
Latency to leave start box in cocaine runway0.70.80.91.00.8-0.8
Latency to leave start box in cocaine runway, F1.71.82.11.51.3-1.3
Latency to leave start box in cocaine runway, M1.31.21.2-1.1-1.11.1
Std. dev. time between licks in bursts1.41.71.7-1.3-1.31.3
Total sessions with >9 infusions0.00.00.0-0.1-0.10.1
Short access day 1 total inactive lever presses0.50.60.6-0.8-0.80.8
Short access day 10 total inactive lever presses0.40.40.4-0.6-0.60.6
Short access day 1 total infusions0.10.10.10.30.3-0.3
Short access day 10 total infusions0.00.00.0-0.2-0.20.2
Short access total infusions0.20.20.2-0.5-0.50.5
Short access day 1 locomotion0.20.20.20.50.5-0.4
Short access day 10 total locomotion0.60.60.6-0.8-0.80.8
Short access total locomotion0.70.80.8-0.9-0.90.9
One hour access (0.3 mA shock)0.30.30.3-0.5-0.50.6
Compulsive drug intake0.00.00.00.10.1-0.1
One hour access (shock baseline)0.00.00.00.00.00.0
Social response proportion0.10.10.10.20.3-0.3
Social responses1.11.41.5-1.2-1.21.2
Social time0.40.50.7-0.8-0.60.7
Soleus weight1.02.92.91.71.7-1.7
Bone: stiffness0.60.91.00.91.0-1.0
Tibialis anterior weight8.228.128.35.35.3-5.3
Time to tail flick, vehicle, before self-admin0.80.90.9-0.9-0.90.9
Time to tail flick, vehicle, after self-admin1.92.02.11.41.4-1.4
Time to tail flick, test, before self-admin0.90.90.9-1.0-1.01.0
Time to tail flick, test, after self-admin3.33.43.5-1.9-1.81.9
Delta time to tail flick, vehicle, before/after SA0.40.40.40.60.6-0.6
Delta time to tail flick, test, before/after SA0.30.20.3-0.5-0.50.5
Tibia length1.23.33.4-1.9-1.81.8
Ambulatory time before self-admin0.60.60.60.80.8-0.8
Ambulatory time after self-admin3.74.14.12.02.0-2.0
Bone: tissue strength0.10.10.1-0.3-0.20.3
Total heroin consumption0.30.40.40.60.6-0.6
Bone: trabecular number2.53.94.0-1.9-2.02.0
Bone: trabecular spacing2.43.13.21.71.8-1.8
Bone: trabecular thickness1.31.51.5-1.2-1.21.2
Bone: trabecular tissue density1.31.81.81.31.4-1.4
Water consumed over 24 hours1.41.61.61.31.3-1.3
Number of responses in last shaping day0.00.00.00.00.0-0.0