LOC120096976

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression LOC120096976 0.09 0.07 2.0e-09 0.05 0.06 0.04 0.05 2.2e-06 5.7e-07 8.2e-06 1.1e-06
2 Adipose gene expression LOC120096976 0.05 0.04 4.6e-06 0.03 0.03 0.03 0.03 4.2e-04 1.4e-04 2.5e-04 2.3e-04
3 NAcc gene expression LOC120096976 0.1 0.06 6.3e-07 0.04 0.05 0.04 0.04 2.5e-05 1.6e-06 1.4e-05 7.5e-06
4 pVTA gene expression LOC120096976 0.18 0.1 2.4e-06 0.11 0.13 0.13 0.13 1.6e-05 3.5e-06 2.6e-06 3.6e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.8-0.2-0.40.5-0.9
Area under the delay curve1.01.11.3-1.0-1.0-1.11.1
BMI with tail0.41.51.81.11.11.2-1.3
BMI without tail0.20.30.7-0.4-0.4-0.50.8
Body weight2.18.710.1-3.2-3.1-3.12.4
Weight adjusted by age0.30.30.70.50.40.8-0.4
Bone surface0.50.81.6-1.1-1.2-0.6-0.1
Bone volume0.40.61.3-1.0-1.1-0.5-0.0
Breakpoint value in progressive ratio session4.04.45.1-2.1-2.1-2.31.8
Number of licking bursts3.13.64.72.12.21.8-1.4
Context. condit. distance diff. score0.00.00.00.10.10.20.0
Locomotion velocity, session 11.21.31.91.00.91.4-1.2
Locomotion distance, session 10.60.71.1-0.9-0.8-1.00.6
Locomotion velocity, session 20.30.30.40.60.60.6-0.4
Locomotion distance, session 21.31.81.91.41.41.2-1.3
Locomotion velocity, session 30.40.50.60.70.70.8-0.5
Locomotion distance, session 33.84.15.1-2.0-1.9-2.31.9
Stereotopy head waving bouts, day 31.11.31.71.11.01.3-1.1
Stereotopy head waving duration, day 32.32.83.91.61.52.0-1.5
Locomotion velocity, session 70.10.10.2-0.4-0.4-0.1-0.0
Locomotion distance, session 70.00.00.1-0.2-0.3-0.2-0.0
Stereotopy head waving bouts, day 70.30.40.80.80.90.4-0.0
Stereotopy head waving duration, day 71.41.72.61.51.61.2-0.7
Locomotion velocity, session 84.04.85.32.32.32.2-1.9
Locomotion distance, session 80.50.70.91.01.00.8-0.7
Degree of sensitization distance1.51.52.31.11.01.5-1.3
Degree of sensitization stereotypy0.40.40.90.91.00.3-0.0
Conditioned locomotion0.20.20.30.50.5-0.10.4
Cocaine response after cond. corrected0.10.10.3-0.10.0-0.50.6
Cocaine response after cond. not corrected0.00.00.1-0.1-0.0-0.30.2
Cocaine response before conditioning0.40.50.9-0.9-0.9-0.60.0
Saline control response0.30.30.6-0.4-0.3-0.70.8
Bone: connectivity density0.30.51.50.0-0.10.9-1.2
Bone: cortical apparent density2.43.13.51.81.81.9-1.5
Bone: cortical area1.42.22.6-1.5-1.5-1.61.3
Bone: cortical porosity2.12.32.41.51.51.6-1.5
Bone: cortical porosity2.42.62.81.71.61.6-1.5
Bone: cortical thickness0.50.81.0-0.8-0.7-1.00.9
Bone: cortical thickness0.70.81.01.01.00.8-0.6
Bone: cortical tissue density2.83.64.12.02.02.0-1.6
Condit. Reinf. active minus inactive responses0.20.30.30.50.50.6-0.5
Condit. Reinf. active-inactive response ratio0.20.20.20.40.40.5-0.4
Condit. Reinf. active responses1.72.12.51.61.61.4-1.2
Condit. Reinf. inactive responses1.41.62.31.51.51.1-0.9
Incentive salience index mean0.10.10.20.40.40.3-0.3
Condit. Reinf. lever presses0.00.00.1-0.2-0.2-0.20.1
Condit. Reinf. active minus inactive responses3.34.15.0-1.9-1.8-2.22.1
Condit. Reinf. active-inactive response ratio1.01.02.3-0.4-0.2-1.31.5
Condit. Reinf. active responses4.46.16.6-2.6-2.5-2.52.1
Condit. Reinf. inactive responses2.93.65.6-2.3-2.4-1.61.1
Condit. Reinf. lever presses8.611.713.2-3.6-3.6-3.52.9
Condit. Reinf. lever reinforcers received4.86.77.5-2.7-2.6-2.72.3
Conditioned reinforcement - actives0.10.10.20.10.2-0.40.5
Conditioned reinforcement - inactives1.41.62.4-1.2-1.1-1.51.2
Conditioned locomotion1.82.12.71.61.61.4-1.1
Patch foraging indifference point 0 sec0.10.10.2-0.4-0.4-0.40.1
Patch foraging indifference point AUC0.70.81.00.80.80.8-1.0
Delay disc. indifference point, 0s delay1.51.73.2-0.9-0.8-1.51.8
Delay disc. indifference point, 16s delay3.13.13.9-1.7-1.6-2.01.8
Delay disc. indifference point, 2s delay1.41.52.0-1.2-1.2-1.01.4
Delay disc. indifference point, 24s delay2.62.52.8-1.7-1.7-1.51.5
Delay disc. indifference point, 4s delay0.20.30.5-0.3-0.2-0.70.7
Delay disc. indifference point, 8s delay0.10.10.2-0.3-0.40.3-0.5
Indifference point function ln k0.70.91.1-0.9-0.9-0.91.0
Indifference point function log k0.70.91.1-0.9-0.9-0.91.0
Patch foraging total patch changes 0 sec0.20.30.4-0.6-0.6-0.60.2
Patch foraging total patch changes 12 sec0.10.20.3-0.3-0.3-0.60.4
Patch foraging total patch changes 18 sec0.30.30.50.40.40.7-0.7
Patch foraging total patch changes 24 sec0.60.70.9-0.9-0.9-0.90.5
Patch foraging total patch changes 6 sec0.00.00.1-0.1-0.00.1-0.3
Patch foraging time to switch 0 sec0.40.60.80.80.70.9-0.6
Patch foraging water rate 0 sec0.71.11.41.11.11.2-0.7
Patch foraging water rate 12 sec0.60.91.3-0.9-0.7-1.01.1
Patch foraging water rate 18 sec0.10.10.30.30.40.6-0.2
Patch foraging water rate 24 sec0.20.30.7-0.2-0.1-0.50.8
Patch foraging water rate 6 sec0.40.50.8-0.9-0.9-0.30.7
Seeking ratio, delayed vs. immediate footshock1.41.62.2-1.2-1.2-1.51.1
Distance traveled before self-admin1.31.32.4-0.7-0.7-1.61.4
Distance traveled after self-admin5.66.26.6-2.5-2.4-2.62.5
Extensor digitorum longus weight0.20.70.80.90.90.9-0.5
Bone: elastic displacement0.00.00.00.00.00.1-0.1
Bone: elastic work1.62.12.4-1.5-1.5-1.51.1
Bone: endosteal estimation1.43.13.8-1.9-2.0-1.81.2
Bone: endosteal perimeter1.73.53.9-2.0-2.0-1.91.6
Epididymis fat weight0.00.00.10.00.00.3-0.3
Delta time in closed arm before/after self-admin1.11.11.8-1.3-1.4-0.80.5
Delta time in open arm before/after self-admin0.80.81.11.01.10.9-0.6
Diff in mean of infusions in LGA sessions0.30.30.7-0.3-0.3-0.90.6
Delay discount exponential model param1.01.11.11.01.01.0-1.1
Extinction: sum of active levers before priming1.81.83.0-1.6-1.7-1.2-0.0
Active lever presses in extinction session 62.22.13.2-1.7-1.8-1.11.1
Bone: final force1.21.92.4-1.5-1.5-1.40.9
Bone: final moment1.72.73.3-1.8-1.8-1.81.1
Food consumed during 24 hour testing period0.60.71.0-1.0-1.0-0.80.5
Glucose0.20.30.40.60.60.6-0.5
Heart weight0.50.71.7-0.6-0.5-0.71.3
Delay discount hyperbolic model param0.90.91.20.90.90.9-1.1
Intermittent access intake day 1-15 change1.61.61.8-1.3-1.3-1.21.2
Intermittent access intake escalation1.61.61.9-1.3-1.2-1.11.4
Intermittent access intake escalation 22.82.83.4-1.5-1.4-1.81.8
Intermitt. access day 1 inactive lever presses1.92.13.7-1.8-1.9-1.00.5
Intermitt. access day 15 inactive lever presses0.80.91.4-0.9-0.9-0.81.2
Intermitt. access escalation Index0.10.10.30.10.1-0.30.5
Intermittent access day 1 total infusions1.01.22.01.31.40.6-0.7
Intermittent access day 15 total infusions0.50.51.2-0.2-0.1-0.91.1
Intermittent access terminal intake (last 3 days)0.70.81.7-0.2-0.0-1.11.3
Intermittent access total infusions0.20.20.40.30.4-0.50.7
Intermittent access day 1 locomotion0.50.50.70.80.90.5-0.7
Intermittent access day 15 total locomotion0.00.00.10.20.20.2-0.1
Intermittent access total locomotion0.80.91.11.11.10.8-0.7
Intermittent access standard deviation6.26.67.4-2.6-2.6-2.72.3
Left kidney weight1.23.34.2-2.1-2.1-1.81.3
Right kidney weight3.08.510.8-3.3-3.3-2.91.9
Cocaine induced anxiety0.30.30.6-0.7-0.8-0.30.1
Post-drug Anxiety0.00.00.1-0.1-0.10.10.3
Baseline Anxiety0.70.81.31.11.10.7-0.4
Tail length5.617.118.3-4.2-4.1-4.33.9
Length with tail8.129.733.0-5.7-5.6-5.74.7
Length without tail3.47.59.9-3.1-3.1-2.71.8
Times rat made contact with spout1.11.31.41.21.21.1-1.1
Lifetime Intake0.20.30.50.70.70.10.0
Liver weight, left0.50.71.01.01.00.8-0.6
Liver weight, right0.00.10.10.30.30.20.1
Locomotor activity0.61.01.20.90.91.1-1.1
Locomotor testing distance0.91.41.91.01.01.4-1.4
Locomotor testing rearing2.03.14.02.02.01.9-1.0
Locomotion in novel chamber0.10.10.30.10.10.2-0.6
Locomotion in novel chamber post-restriction0.70.81.0-0.8-0.8-1.01.0
Fecal boli incidents, locomotor time 10.91.01.41.11.01.2-0.6
Change in fecal boli incidents, locomotor task0.10.10.1-0.2-0.2-0.2-0.4
Time >=10cm from walls, locomotor time 10.10.10.10.20.20.1-0.4
Bouts of movement, locomotor time 12.52.83.9-1.4-1.4-1.82.0
Total resting periods, locomotor time 12.42.73.6-1.4-1.4-1.71.9
Rest time, locomotor task time 10.10.10.10.40.4-0.10.2
Distance moved, locomotor task time 10.10.10.10.20.30.2-0.3
Vertical activity count, locomotor time 10.60.60.9-1.0-1.0-0.60.4
Time >=10cm from walls, locomotor time 20.30.30.70.70.8-0.10.2
Bouts of movement, locomotor time 20.30.41.0-0.3-0.3-0.51.0
Total resting periods, locomotor time 20.20.20.5-0.2-0.1-0.20.7
Rest time, locomotor task time 20.10.10.10.10.2-0.30.3
Distance moved, locomotor task time 20.30.30.40.60.70.5-0.4
Vertical activity count, locomotor time 20.30.30.5-0.7-0.7-0.50.4
Light reinforcement 10.20.30.30.50.50.6-0.6
Light reinforcement 24.05.37.72.22.12.8-2.1
Bone: marrow area1.53.24.0-2.0-2.0-1.81.2
Bone: maximum diameter1.22.22.6-1.6-1.6-1.51.3
Bone: maximum force2.23.84.5-2.1-2.1-2.11.4
Bone: maximum moment2.94.95.8-2.4-2.3-2.41.7
Mean time between licks in bursts0.00.10.1-0.2-0.1-0.30.3
Mean num. licks in bursts0.70.91.2-1.1-1.1-0.90.6
Cd content in liver0.10.20.30.10.10.5-0.6
Co content in liver1.51.82.71.00.91.6-1.6
Cu content in liver0.50.60.8-0.8-0.7-0.90.6
Fe content in liver0.00.10.10.20.10.3-0.3
K content in liver0.10.10.1-0.2-0.2-0.40.3
Mg content in liver0.20.20.40.60.60.4-0.3
Mn content in liver0.40.50.90.90.90.4-0.4
Na content in liver3.53.74.9-1.7-1.5-2.22.2
Rb content in liver0.00.00.1-0.00.0-0.10.3
Se content in liver6.88.410.33.23.22.8-2.3
Sr content in liver1.00.91.00.90.91.0-0.9
Zn content in liver0.40.40.70.50.40.7-0.8
Bone: minimum diameter4.58.410.2-2.9-2.8-3.22.7
Time in familiar zone, hab. session 10.30.30.4-0.5-0.5-0.60.5
Time in novel zone, hab. session 10.40.40.70.80.90.5-0.2
Total zone transitions, hab. session 10.20.20.6-0.3-0.2-0.70.5
Total locomotion distance, hab. session 12.94.15.5-1.9-1.8-2.31.9
Locomotion velocity, hab. session 11.31.92.5-1.4-1.4-1.61.1
Time in familiar zone, hab. session 21.81.82.8-1.6-1.7-1.10.8
Time in novel zone, hab. session 21.11.11.71.31.31.0-0.6
Total zone transitions, hab. session 21.31.73.11.61.80.8-0.7
Total locomotion distance, hab. session 20.10.10.3-0.1-0.0-0.50.5
Locomotion velocity, hab. session 20.00.00.10.10.2-0.30.2
Novel to familiar place preference ratio0.60.61.0-0.6-0.5-1.01.0
Novelty place preference0.50.50.8-0.5-0.4-0.90.9
Time in novel zone, NPP test0.30.30.5-0.2-0.1-0.70.7
Total zone transitions, NPP test0.20.20.50.40.30.4-0.7
Total locomotion distance, NPP test2.33.23.9-2.0-2.0-1.81.3
Locomotion velocity, NPP test2.63.74.4-2.1-2.1-2.01.4
Intraocular pressure0.00.00.1-0.2-0.2-0.30.0
Delta distance traveled before/after self-admin2.42.63.9-1.9-2.0-1.11.2
Delta ambulatory time before/after self-admin2.22.43.8-1.9-1.9-1.11.0
Parametrial fat weight1.02.03.01.11.01.7-1.7
Pavlov. Cond. lever latency0.10.10.1-0.3-0.4-0.10.0
Pavlov. Cond. magazine entry latency0.10.20.30.50.60.3-0.2
Pavlov. Cond. change in total contacts0.00.10.10.30.30.1-0.0
Pavlov. Cond. index score0.20.30.50.60.70.4-0.3
Pavlov. Cond. latency score0.10.10.20.40.40.2-0.1
Pavlov. Cond. lever contacts0.20.20.4-0.4-0.3-0.60.6
Pavlov. Cond. magazine entry number0.20.30.5-0.6-0.7-0.40.2
Pavlov. Cond. intertrial magazine entries0.40.50.80.90.90.6-0.2
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.70.80.3-0.2
Pavlov. Cond. response bias0.00.00.10.20.2-0.10.1
Pavlov. Cond. lever latency4.46.07.32.72.72.4-1.9
Pavlov. Cond. magazine entry latency3.03.44.2-2.0-2.1-1.81.5
Pavlov. Cond. change in total contacts8.311.412.9-3.6-3.6-3.42.9
Pavlov. Cond. index score4.76.07.3-2.7-2.7-2.41.9
Pavlov. Cond. latency score4.45.56.8-2.6-2.6-2.31.8
Pavlov. Cond. lever contacts4.15.76.6-2.6-2.6-2.41.9
Pavlov. Cond. magazine entry number2.93.64.72.12.21.8-1.4
Pavlov. Cond. intertrial magazine entries2.12.83.61.51.51.7-1.9
Pavlov. Cond. lever-magazine prob. diff.4.76.07.1-2.7-2.7-2.51.9
Pavlov. Cond. response bias4.66.27.3-2.7-2.7-2.52.0
Time in closed arm before self-admin0.70.81.61.21.30.30.2
Time in closed arm after self-admin0.60.71.1-0.7-0.7-1.10.7
Time in open arm before self-admin1.92.03.7-1.8-1.9-1.10.3
Time in open arm after self-admin0.10.10.2-0.4-0.40.1-0.2
Bone: periosteal estimation1.93.94.5-2.1-2.1-2.11.6
Bone: periosteal perimeter2.13.64.1-1.9-1.8-2.01.8
Bone: post-yield work1.41.92.5-1.6-1.6-1.30.9
Progressive ratio test 1 active lever presses0.40.50.8-0.7-0.7-0.90.3
Progressive ratio test 1 breakpoint0.80.81.3-0.9-0.9-1.10.5
Progressive ratio test 1 inactive lever presses0.80.91.0-0.9-0.9-0.91.0
Progressive ratio test 2 active lever presses0.50.61.1-0.4-0.4-1.01.0
Progressive ratio test 2 breakpoint0.40.40.8-0.3-0.3-0.90.8
Progressive ratio test 2 inactive lever presses3.74.26.6-1.8-1.7-2.62.0
Incentive Sensitization - Responses0.20.20.6-0.1-0.0-0.50.8
Incentive Sensitization - Breakpoint0.10.10.40.00.0-0.30.6
Sum of active levers in priming session hrs 5-60.10.10.1-0.3-0.3-0.1-0.3
Progressive ratio0.00.00.1-0.0-0.10.30.0
Food seeking constrained by brief footshock3.34.05.0-2.2-2.2-2.01.4
Seeking ratio, punishment vs. effort0.91.11.9-1.1-1.0-1.40.7
Retroperitoneal fat weight1.75.76.52.62.62.5-1.9
Reaction time number correct0.20.20.40.50.50.7-0.1
Reaction time mean minus median0.10.20.2-0.5-0.5-0.2-0.4
Reaction time mean minus median AUC0.20.20.3-0.6-0.6-0.1-0.5
Reaction time num false alarms1.21.71.91.41.41.3-1.1
Reaction time num false alarms AUC1.62.22.51.51.51.6-1.4
Reaction time trials correct on left0.20.20.40.50.50.7-0.1
Reaction time trials on left0.20.30.50.50.50.7-0.1
Reaction time mean0.10.20.50.10.10.5-0.7
Reaction time mean AUC0.40.51.20.40.30.8-1.1
Median of all reaction times0.20.30.50.40.30.7-0.7
Reaction time omissions0.40.50.80.50.50.9-0.9
Reaction time false alarm rate0.71.01.11.01.01.0-1.1
Reaction time premature initiation rate0.10.10.2-0.4-0.5-0.3-0.2
Reaction time premature initiations0.00.00.1-0.1-0.10.1-0.3
Std. dev. reaction times0.10.20.5-0.4-0.40.1-0.7
Reaction time trials completed0.20.30.50.50.50.7-0.1
Reaction time trials AUC0.30.50.80.70.70.9-0.4
Run reversals in cocaine runway, females0.10.10.3-0.1-0.10.6-0.4
Run reversals in cocaine runway, males1.51.52.70.90.81.6-1.3
Latency to leave start box in cocaine runway0.00.00.10.10.10.30.1
Latency to leave start box in cocaine runway, F0.30.30.80.50.50.90.0
Latency to leave start box in cocaine runway, M0.10.10.2-0.2-0.2-0.4-0.1
Std. dev. time between licks in bursts1.21.51.9-1.1-1.1-1.31.4
Total sessions with >9 infusions1.31.52.01.41.41.1-0.9
Short access day 1 total inactive lever presses1.11.32.0-0.9-0.8-1.21.4
Short access day 10 total inactive lever presses1.82.02.6-1.5-1.6-1.21.2
Short access day 1 total infusions0.10.10.10.30.3-0.20.3
Short access day 10 total infusions0.91.01.90.90.90.8-1.4
Short access total infusions1.21.41.61.21.21.0-1.2
Short access day 1 locomotion2.93.14.51.41.42.0-2.1
Short access day 10 total locomotion0.30.30.5-0.6-0.7-0.4-0.6
Short access total locomotion1.41.52.31.11.11.0-1.5
One hour access (0.3 mA shock)1.51.82.3-1.3-1.3-1.51.3
Compulsive drug intake1.01.02.7-0.6-0.5-0.81.7
One hour access (shock baseline)0.10.10.3-0.3-0.3-0.50.1
Social response proportion3.94.34.8-2.0-2.0-2.12.2
Social responses0.50.61.2-1.0-1.1-0.40.5
Social time1.82.33.5-1.8-1.9-1.31.0
Soleus weight0.41.11.60.80.71.3-1.2
Bone: stiffness1.32.02.3-1.5-1.5-1.51.1
Tibialis anterior weight0.00.10.20.40.40.2-0.1
Time to tail flick, vehicle, before self-admin0.50.50.90.91.00.4-0.4
Time to tail flick, vehicle, after self-admin0.70.71.2-0.7-0.7-0.91.1
Time to tail flick, test, before self-admin0.40.40.70.80.90.40.4
Time to tail flick, test, after self-admin0.10.10.30.30.40.5-0.3
Delta time to tail flick, vehicle, before/after SA0.60.60.9-0.9-0.9-0.60.5
Delta time to tail flick, test, before/after SA0.30.20.70.20.20.4-0.8
Tibia length1.64.45.7-2.4-2.4-2.11.3
Ambulatory time before self-admin0.70.71.5-0.6-0.5-1.20.8
Ambulatory time after self-admin6.97.69.2-3.0-3.0-2.72.2
Bone: tissue strength3.63.54.1-1.9-1.9-2.01.6
Total heroin consumption1.11.32.4-1.1-1.1-1.50.4
Bone: trabecular number0.30.51.0-0.9-1.0-0.2-0.3
Bone: trabecular spacing1.31.72.5-1.1-0.9-1.51.6
Bone: trabecular thickness0.50.60.70.70.70.9-0.8
Bone: trabecular tissue density2.33.23.81.91.91.9-1.4
Water consumed over 24 hours0.10.20.2-0.4-0.5-0.40.1
Number of responses in last shaping day1.11.12.8-0.6-0.5-1.71.1